Rh7BG116200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001040
Physical Location & Seq
Reverse (-)
8693870 .. 8695803
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG116200.1

Sequence Viewer

Length: 1284 bp
ATGGAGAGTTTCATAGAAGTCGTCTCTATTAACGAGAGCCGGGGTCTGAGTTCGTATTCGTACAAGGGGGAACTCAATCTGTACATTCAATTTAAGGACCATCTTAACCGGATCAATCTTGAGAAGCTCGAGCGAAAGGAGGAACCTAAATTGGAACTAGTGGCAGATTATCGGACCGAGGGTCTTCCCCTTGGAATATGTCCATTCTTGGAGATTTCAGGTAAAAAGTACATGGTTGGGAGAGAAAGGACTTGTAAGATACCCGATGCTGAGTATGATTGGAAATATCAACTAGATTGGGAAGTATACAAGCCATCCGATGCCCTCAATTCTCATGTTTTTGTTTTGGATCCCTCTACTAGAAAGATCACAATTGATTGTAGTTTTCCTAAAGCAAATGCAGCAAAGACCAATGCCAAAGTCTTGGCTACCATTGATCAAAAGGTGTACGTACTTGGTACTCGGCCTTACTACTATTGGGGTGTGCTTCCAGATCCAGCGTTCGAGTGCTTTGATATTGTTGAAAATAGGTGGGAGCCGCTGCCTGCTCCTCCTGATTATTACGACCCTCCTAAGTCCGTGCAGAGTCCTGTTACCAGATATTATTATCATTTTGTGTTTGGCAGAGGGATTTATTTGTACATTTTAGGGGGACTCTTTAGTTTCAATGTGGATAAACCCACTGAAGGATGGAAATGGGTTGGAGACTCAAAGTGGAGGCTTGATTTGGAATTTTTGCACTACCATTCAGATGGAGAAGAAGAGGTAGAAAGGGAGCCCGAGGACGATGACTCGATGCCTTTGACACCCGTTCATCCCTACCATTCAATTTGCTTTGCAGAACCAGGGAAATGTGGCCTAGCTGTTGGCTACACAGCTAAAGGGTTGGTGAGTTATGTCTTTGATCATGATGGCAACTTGCTATTTCAACAGCTGCTCCAGCATCATAATCTTCGTCTTCCACCTCCAGATCAGATAAGGTTTGGGGGAAAAGTTCTTTATGTGGGTGGTGACAAGTATTGTCTCATTTTGTCAGGAAAAATTGACAAACCTTTATGGTCGTTAGCGGTGGCAACCTTTAGTCTGGCTTTTTTTTATGGTCTATTCCACCAAGTTGAATTATCTTATCATCAATTCGATGACATTGATTCAGAGTATGCTTATCTTCATCTATACGAGGAGAACTACAAGTTTCCAATGCTTTATGATTACAGAAATTTGCAGGATGTTTTTGTCATTTCCTTATTTGAACTTAATAGTGAAAGTGCAACTTGTTTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

49.62

Weight (kDa)

5.09

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 111 - 237 1.2e-07 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AciI CCGC 2 cut(s) 539, 1067
AclWI GGATC 4 cut(s) 119, 344, 357, 488
AcsI RAATTY 2 cut(s) 731, 1216
AcuI CTGAAG 1 cut(s) 705
AfaI GTAC 7 cut(s) 62, 83, 230, 449, 453, 460, 641
AfiI CCNNNNNNNGG 1 cut(s) 686
AgsI TTSAA 7 cut(s) 89, 524, 667, 828, 929, 1118, 1250
AhdI GACNNNNNGTC 1 cut(s) 180
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 844
AluBI AGCT 4 cut(s) 127, 863, 878, 934
AluI AGCT 4 cut(s) 127, 863, 878, 934
Alw26I GTCTC 3 cut(s) 28, 699, 1028
AlwI GGATC 4 cut(s) 119, 344, 357, 488
Ama87I CYCGRG 2 cut(s) 128, 779
AoxI GGCC 2 cut(s) 464, 856
ApeKI GCWGC 3 cut(s) 401, 541, 934
ApoI RAATTY 2 cut(s) 731, 1216
AspS9I GGNCC 2 cut(s) 97, 174
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 901, 1022
AvaI CYCGRG 2 cut(s) 128, 779
AvaII GGWCC 2 cut(s) 97, 174
BamHI GGATCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 780
BbsI GAAGAC 2 cut(s) 176, 950
BbvI GCAGC 3 cut(s) 413, 528, 921
BccI CCATC 5 cut(s) 108, 322, 684, 746, 905
BciT130I CCWGG 1 cut(s) 846
BclI TGATCA 2 cut(s) 436, 904
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 3 cut(s) 28, 699, 1028
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 4 cut(s) 158, 293, 360, 860
BisI GCNGC 4 cut(s) 402, 539, 542, 935
BlsI GCNGC 4 cut(s) 403, 540, 543, 936
Bme1390I CCNGG 2 cut(s) 41, 846
Bme18I GGWCC 2 cut(s) 97, 174
BmeRI GACNNNNNGTC 1 cut(s) 180
BmeT110I CYCGRG 2 cut(s) 128, 779
BmgT120I GGNCC 2 cut(s) 97, 174
BmiI GGNNCC 4 cut(s) 144, 351, 537, 777
BmrFI CCNGG 2 cut(s) 41, 846
BmsI GCATC 4 cut(s) 256, 310, 786, 952
BpiI GAAGAC 2 cut(s) 176, 950
BpmI CTGGAG 2 cut(s) 923, 951
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 451
BsaJI CCNNGG 5 cut(s) 40, 177, 190, 780, 845
BsaWI WCCGGW 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 921, 951
Bsc4I CCNNNNNNNGG 1 cut(s) 686
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 5 cut(s) 40, 177, 190, 780, 845
BseGI GGATG 4 cut(s) 314, 695, 814, 1231
BseLI CCNNNNNNNGG 1 cut(s) 686
BseMII CTCAG 2 cut(s) 38, 261
BseRI GAGGAG 2 cut(s) 540, 1193
BseXI GCAGC 3 cut(s) 413, 528, 921
BsgI GTGCAG 1 cut(s) 602
BshFI GGCC 2 cut(s) 466, 858
BsiHKCI CYCGRG 2 cut(s) 128, 779
BsiSI CCGG 2 cut(s) 40, 109
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 1 cut(s) 686
BsmAI GTCTC 3 cut(s) 28, 699, 1028
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 666
BsnI GGCC 2 cut(s) 466, 858
BsoBI CYCGRG 2 cut(s) 128, 779
Bsp1286I GDGCHC 1 cut(s) 780
Bsp1407I TGTACA 2 cut(s) 81, 639
Bsp143I GATC 7 cut(s) 111, 349, 366, 436, 493, 904, 970
BspACI CCGC 2 cut(s) 539, 1067
BspANI GGCC 2 cut(s) 466, 858
BspCNI CTCAG 2 cut(s) 39, 262
BspHI TCATGA 1 cut(s) 907
BspLI GGNNCC 4 cut(s) 144, 351, 537, 777
BspPI GGATC 4 cut(s) 119, 344, 357, 488
BsrGI TGTACA 2 cut(s) 81, 639
BssECI CCNNGG 5 cut(s) 40, 177, 190, 780, 845
BssMI GATC 7 cut(s) 111, 349, 366, 436, 493, 904, 970
BssNAI GTATAC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 190
Bst1107I GTATAC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 846
Bst6I CTCTTC 1 cut(s) 756
BstAUI TGTACA 2 cut(s) 81, 639
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 3 cut(s) 47, 270, 573
BstF5I GGATG 4 cut(s) 314, 695, 814, 1231
BstKTI GATC 7 cut(s) 114, 352, 369, 439, 496, 907, 973
BstMAI GTCTC 3 cut(s) 28, 699, 1028
BstMBI GATC 7 cut(s) 111, 349, 366, 436, 493, 904, 970
BstMWI GCNNNNNNNGC 2 cut(s) 401, 940
BstNI CCWGG 1 cut(s) 846
BstSCI CCNGG 2 cut(s) 39, 844
BstSNI TACGTA 1 cut(s) 451
BstV1I GCAGC 3 cut(s) 413, 528, 921
BstV2I GAAGAC 2 cut(s) 176, 950
BstX2I RGATCY 2 cut(s) 349, 493
BstXI CCANNNNNNTGG 2 cut(s) 424, 752
BstYI RGATCY 2 cut(s) 349, 493
BstZ17I GTATAC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 466, 858
BtsCI GGATG 4 cut(s) 314, 695, 814, 1231
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 1 cut(s) 546
CciI TCATGA 1 cut(s) 907
Cfr13I GGNCC 2 cut(s) 97, 174
CpoI CGGWCCG 1 cut(s) 174
Csp6I GTAC 7 cut(s) 61, 82, 229, 448, 452, 459, 640
CspI CGGWCCG 1 cut(s) 174
CviAII CATG 3 cut(s) 232, 335, 908
CviQI GTAC 7 cut(s) 61, 82, 229, 448, 452, 459, 640
DdeI CTNAG 3 cut(s) 47, 270, 573
DpnI GATC 7 cut(s) 113, 351, 368, 438, 495, 906, 972
DpnII GATC 7 cut(s) 111, 349, 366, 436, 493, 904, 970
DriI GACNNNNNGTC 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 756
Eam1105I GACNNNNNGTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 756
Eco105I TACGTA 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 780
Eco47I GGWCC 2 cut(s) 97, 174
Eco57I CTGAAG 1 cut(s) 705
Eco88I CYCGRG 2 cut(s) 128, 779
EcoRII CCWGG 1 cut(s) 844
EcoT14I CCWWGG 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 3 cut(s) 235, 338, 911
FalI AAGNNNNNCTT 1 cut(s) 1255
FaqI GGGAC 1 cut(s) 666
FatI CATG 3 cut(s) 231, 334, 907
FbaI TGATCA 2 cut(s) 436, 904
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 402, 539, 542, 935
FokI GGATG 4 cut(s) 301, 702, 801, 1238
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 4 cut(s) 402, 539, 542, 935
FspBI CTAG 4 cut(s) 158, 293, 360, 860
GluI GCNGC 4 cut(s) 402, 539, 542, 935
GsuI CTGGAG 2 cut(s) 923, 951
HaeIII GGCC 2 cut(s) 466, 858
HapII CCGG 2 cut(s) 40, 109
Hin1II CATG 3 cut(s) 235, 338, 911
HinfI GANTC 5 cut(s) 586, 654, 707, 791, 1148
HpaII CCGG 2 cut(s) 40, 109
HphI GGTGA 2 cut(s) 901, 1022
Hpy166II GTNNAC 2 cut(s) 307, 448
Hpy188I TCNGA 6 cut(s) 48, 174, 319, 751, 975, 1153
Hpy188III TCNNGA 6 cut(s) 119, 491, 554, 908, 968, 1035
Hpy8I GTNNAC 2 cut(s) 307, 448
HpyAV CCTTC 1 cut(s) 680
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 6 cut(s) 401, 583, 739, 839, 1222, 1268
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 940
HpyF3I CTNAG 3 cut(s) 47, 270, 573
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 3 cut(s) 235, 338, 911
Ksp22I TGATCA 2 cut(s) 436, 904
Kzo9I GATC 7 cut(s) 111, 349, 366, 436, 493, 904, 970
LmnI GCTCC 4 cut(s) 535, 553, 775, 942
Lsp1109I GCAGC 3 cut(s) 413, 528, 921
LweI GCATC 4 cut(s) 256, 310, 786, 952
MaeI CTAG 4 cut(s) 158, 293, 360, 860
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 592, 1010
MalI GATC 7 cut(s) 113, 351, 368, 438, 495, 906, 972
MboI GATC 7 cut(s) 111, 349, 366, 436, 493, 904, 970
MboII GAAGA 6 cut(s) 176, 770, 773, 944, 950, 1157
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 2 cut(s) 349, 493
MhlI GDGCHC 1 cut(s) 780
MlyI GAGTC 4 cut(s) 595, 648, 701, 785
MmeI TCCRAC 1 cut(s) 682
MseI TTAA 5 cut(s) 30, 93, 105, 1254, 1282
MslI CAYNNNNRTG 1 cut(s) 750
MspA1I CMGCKG 2 cut(s) 541, 934
MspI CCGG 2 cut(s) 40, 109
MspR9I CCNGG 2 cut(s) 41, 846
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 846
MwoI GCNNNNNNNGC 2 cut(s) 401, 940
NciI CCSGG 1 cut(s) 41
NdeII GATC 7 cut(s) 111, 349, 366, 436, 493, 904, 970
NlaIII CATG 3 cut(s) 235, 338, 911
NlaIV GGNNCC 4 cut(s) 144, 351, 537, 777
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 1010
PaeR7I CTCGAG 1 cut(s) 128
PagI TCATGA 1 cut(s) 907
PfeI GAWTC 1 cut(s) 1148
PkrI GCNGC 4 cut(s) 403, 540, 543, 936
PleI GAGTC 4 cut(s) 594, 648, 701, 785
PpsI GAGTC 4 cut(s) 594, 648, 701, 785
Ppu21I YACGTR 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 844
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 4 cut(s) 144, 351, 537, 777
PspPI GGNCC 2 cut(s) 97, 174
PspXI VCTCGAGB 1 cut(s) 128
PsuI RGATCY 2 cut(s) 349, 493
PvuII CAGCTG 1 cut(s) 934
RsaI GTAC 7 cut(s) 62, 83, 230, 449, 453, 460, 641
RsaNI GTAC 7 cut(s) 61, 82, 229, 448, 452, 459, 640
RseI CAYNNNNRTG 1 cut(s) 750
Rsr2I CGGWCCG 1 cut(s) 174
RsrII CGGWCCG 1 cut(s) 174
SaqAI TTAA 5 cut(s) 30, 93, 105, 1254, 1282
SatI GCNGC 4 cut(s) 402, 539, 542, 935
Sau3AI GATC 7 cut(s) 111, 349, 366, 436, 493, 904, 970
Sau96I GGNCC 2 cut(s) 97, 174
SchI GAGTC 4 cut(s) 595, 648, 701, 785
ScrFI CCNGG 2 cut(s) 41, 846
SduI GDGCHC 1 cut(s) 780
SfaNI GCATC 4 cut(s) 256, 310, 786, 952
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 2 cut(s) 97, 174
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 2 cut(s) 119, 128
SmoI CTYRAG 2 cut(s) 119, 128
SnaBI TACGTA 1 cut(s) 451
SpeI ACTAGT 1 cut(s) 157
SsiI CCGC 2 cut(s) 539, 1067
SspMI CTAG 4 cut(s) 158, 293, 360, 860
StyD4I CCNGG 2 cut(s) 39, 844
StyI CCWWGG 1 cut(s) 190
TaiI ACGT 1 cut(s) 453
TaqI TCGA 4 cut(s) 129, 504, 794, 1137
TaqII GACCGA 1 cut(s) 191
TatI WGTACW 3 cut(s) 81, 228, 639
TauI GCSGC 1 cut(s) 541
TfiI GAWTC 1 cut(s) 1148
Tru1I TTAA 5 cut(s) 30, 93, 105, 1254, 1282
Tru9I TTAA 5 cut(s) 30, 93, 105, 1254, 1282
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 1 cut(s) 1010
TseI GCWGC 3 cut(s) 401, 541, 934
Tsp45I GTSAC 1 cut(s) 1010
TspDTI ATGAA 2 cut(s) 803, 1157
TspGWI ACGGA 1 cut(s) 568
TspRI CASTG 1 cut(s) 688
VpaK11BI GGWCC 2 cut(s) 97, 174
XapI RAATTY 2 cut(s) 731, 1216
XhoI CTCGAG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 4 cut(s) 158, 293, 360, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.