Rh4DG020600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001040
Physical Location & Seq
Reverse (-)
3207400 .. 3208555
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG020600.1

Sequence Viewer

Length: 1071 bp
ATGGAGAGTTCCATGGAAGTCGTCTCTATTAACGAGAGCCGGGGGCTGAGTTCATATTCGTACAAGGGGGAACTCAATCTGTACATTCAATTTAAGGACCATCTTAACCGGATCAATCTTGAGAAGCTCGAGCGAAAAGAGAAACCTAAATTGGAACTAGTGGCAGATTATCGGACCGAGGGTCTTCCCCTTGGAATGTGTCCCTTCTTGGAGATTTCAAGTAAAAAGTACATGGTTGGGGGAGAAAGGACTCGTAAGATACCCGATGCTGAGGATGATTGGGAATATCAACTAGATTGGGAAGTATACAAGCCATCCGATGCCCTCAATTCTCATGTTTTTGTTTTGGATCCCTCTACCGGAAAGATCACAATTGATTGTAGTTTTCCTAAAGCAAATGCAGCAAAGACCAATGCCAAAGTCTTGGCTACCATTGATCAAAAGGTGTGGGAGCCGCTGCCTGCTCCTCCTGATTATTACGACCCTCCTAAGTCCTTGCAGAGTCATGTTACCAGATATTATTATCATTTTGTGTTTGGCAGAGGGATTTATTTGTACACTTTAGGGGGACTCTTCAGTTTCAATGTGGATAAACCCATTGAAGGATGGAAATGGGTTGGAGACTCAAAGTGGAGGCTTGATTTGGAATTTTTGCACTACCATTCAGATGGAGAAGAAGAGGTAGAAAGGGAGCCCGAGGACGATGACTCGATGTCTTTGACACCCGCTCATCCCTACCATTCAATTTGCTTTGCAGAACCAGGGAAAGGTGGCCTAGCTGTTGGCTACACGGCTAAAGGGTTGGTGGGTTATGTCTTTGATCATGATGGCAACTTGCTATTTCAACAGCTGCTCCAGCATCATAATCTTCGTCTTCCACCTCCAGATCAGATAAGGTTTGGGGGAAAAGTTCTTTATGTGGGTGGTGACAAGTATTGTCTCATTTTGTCAGGAAAAATTGACAAACCTTCATGGTCGTTAGCGGTGGCAACCTTTAGTCTGGCTTTTTTTTATGGTCTATTCCACCAAGTTGAATTATCTTATCATCAATTCGATGACATTGATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

40.73

Weight (kDa)

5.32

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 728
AccI GTMKAC 1 cut(s) 306
AciI CCGC 3 cut(s) 455, 726, 983
AclWI GGATC 4 cut(s) 119, 344, 357, 1058
AcsI RAATTY 1 cut(s) 647
AcuI CTGAAG 1 cut(s) 559
AfaI GTAC 4 cut(s) 62, 83, 230, 557
AfiI CCNNNNNNNGG 3 cut(s) 359, 602, 767
AgsI TTSAA 7 cut(s) 89, 219, 583, 602, 744, 845, 1034
AhdI GACNNNNNGTC 2 cut(s) 180, 712
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 760
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 3 cut(s) 127, 779, 850
AluI AGCT 3 cut(s) 127, 779, 850
Alw26I GTCTC 3 cut(s) 28, 615, 944
AlwI GGATC 4 cut(s) 119, 344, 357, 1058
Ama87I CYCGRG 2 cut(s) 128, 695
AoxI GGCC 1 cut(s) 772
ApeKI GCWGC 3 cut(s) 401, 457, 850
ApoI RAATTY 1 cut(s) 647
AspS9I GGNCC 2 cut(s) 97, 174
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 938
AvaI CYCGRG 2 cut(s) 128, 695
AvaII GGWCC 2 cut(s) 97, 174
BamHI GGATCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 2 cut(s) 176, 866
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 413, 444, 837
BccI CCATC 5 cut(s) 108, 322, 600, 662, 821
BceAI ACGGC 1 cut(s) 807
BciT130I CCWGG 1 cut(s) 762
BclI TGATCA 2 cut(s) 436, 820
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 3 cut(s) 28, 615, 944
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 3 cut(s) 158, 293, 776
BisI GCNGC 4 cut(s) 402, 455, 458, 851
BlsI GCNGC 4 cut(s) 403, 456, 459, 852
Bme1390I CCNGG 2 cut(s) 41, 762
Bme18I GGWCC 2 cut(s) 97, 174
BmeRI GACNNNNNGTC 2 cut(s) 180, 712
BmeT110I CYCGRG 2 cut(s) 128, 695
BmgT120I GGNCC 2 cut(s) 97, 174
BmiI GGNNCC 3 cut(s) 351, 453, 693
BmrFI CCNGG 2 cut(s) 41, 762
BmsI GCATC 3 cut(s) 256, 310, 868
BpiI GAAGAC 2 cut(s) 176, 866
BpmI CTGGAG 2 cut(s) 839, 867
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 41
BsaJI CCNNGG 6 cut(s) 12, 40, 177, 190, 696, 761
BsaWI WCCGGW 2 cut(s) 108, 359
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 602, 767
BseBI CCWGG 1 cut(s) 762
BseDI CCNNGG 6 cut(s) 12, 40, 177, 190, 696, 761
BseGI GGATG 4 cut(s) 280, 314, 611, 730
BseLI CCNNNNNNNGG 3 cut(s) 359, 602, 767
BseMII CTCAG 2 cut(s) 38, 261
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 3 cut(s) 413, 444, 837
BshFI GGCC 1 cut(s) 774
BsiHKCI CYCGRG 2 cut(s) 128, 695
BsiSI CCGG 3 cut(s) 40, 109, 360
BslFI GGGAC 2 cut(s) 186, 582
BslI CCNNNNNNNGG 3 cut(s) 359, 602, 767
BsmAI GTCTC 3 cut(s) 28, 615, 944
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 186, 582
BsnI GGCC 1 cut(s) 774
BsoBI CYCGRG 2 cut(s) 128, 695
Bsp1286I GDGCHC 1 cut(s) 696
Bsp1407I TGTACA 2 cut(s) 81, 555
Bsp143I GATC 7 cut(s) 111, 349, 366, 436, 820, 886, 1063
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 3 cut(s) 455, 726, 983
BspANI GGCC 1 cut(s) 774
BspCNI CTCAG 2 cut(s) 39, 262
BspHI TCATGA 1 cut(s) 823
BspLI GGNNCC 3 cut(s) 351, 453, 693
BspPI GGATC 4 cut(s) 119, 344, 357, 1058
BsrBI CCGCTC 1 cut(s) 728
BsrGI TGTACA 2 cut(s) 81, 555
BssECI CCNNGG 6 cut(s) 12, 40, 177, 190, 696, 761
BssMI GATC 7 cut(s) 111, 349, 366, 436, 820, 886, 1063
BssNAI GTATAC 1 cut(s) 307
BssT1I CCWWGG 2 cut(s) 12, 190
Bst1107I GTATAC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 762
Bst6I CTCTTC 2 cut(s) 578, 672
BstAUI TGTACA 2 cut(s) 81, 555
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 3 cut(s) 47, 270, 489
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 4 cut(s) 280, 314, 611, 730
BstKTI GATC 7 cut(s) 114, 352, 369, 439, 823, 889, 1066
BstMAI GTCTC 3 cut(s) 28, 615, 944
BstMBI GATC 7 cut(s) 111, 349, 366, 436, 820, 886, 1063
BstMWI GCNNNNNNNGC 2 cut(s) 401, 856
BstNI CCWGG 1 cut(s) 762
BstSCI CCNGG 2 cut(s) 39, 760
BstV1I GCAGC 3 cut(s) 413, 444, 837
BstV2I GAAGAC 2 cut(s) 176, 866
BstX2I RGATCY 1 cut(s) 349
BstXI CCANNNNNNTGG 2 cut(s) 424, 668
BstYI RGATCY 1 cut(s) 349
BstZ17I GTATAC 1 cut(s) 307
BsuRI GGCC 1 cut(s) 774
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 4 cut(s) 280, 314, 611, 730
Cac8I GCNNGC 1 cut(s) 462
CciI TCATGA 1 cut(s) 823
Cfr13I GGNCC 2 cut(s) 97, 174
CpoI CGGWCCG 1 cut(s) 174
Csp6I GTAC 4 cut(s) 61, 82, 229, 556
CspCI CAANNNNNGTGG 2 cut(s) 428, 463
CspI CGGWCCG 1 cut(s) 174
CviAII CATG 6 cut(s) 13, 232, 335, 506, 824, 972
CviQI GTAC 4 cut(s) 61, 82, 229, 556
DdeI CTNAG 3 cut(s) 47, 270, 489
DpnI GATC 7 cut(s) 113, 351, 368, 438, 822, 888, 1065
DpnII GATC 7 cut(s) 111, 349, 366, 436, 820, 886, 1063
DriI GACNNNNNGTC 2 cut(s) 180, 712
Eam1104I CTCTTC 2 cut(s) 578, 672
Eam1105I GACNNNNNGTC 2 cut(s) 180, 712
EarI CTCTTC 2 cut(s) 578, 672
Eco130I CCWWGG 2 cut(s) 12, 190
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 97, 174
Eco57I CTGAAG 1 cut(s) 559
Eco88I CYCGRG 2 cut(s) 128, 695
EcoRII CCWGG 1 cut(s) 760
EcoT14I CCWWGG 2 cut(s) 12, 190
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 2 cut(s) 12, 190
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 6 cut(s) 16, 235, 338, 509, 827, 975
FaqI GGGAC 2 cut(s) 186, 582
FatI CATG 6 cut(s) 12, 231, 334, 505, 823, 971
FauI CCCGC 1 cut(s) 733
FbaI TGATCA 2 cut(s) 436, 820
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 402, 455, 458, 851
FokI GGATG 4 cut(s) 287, 301, 618, 717
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 4 cut(s) 402, 455, 458, 851
FspBI CTAG 3 cut(s) 158, 293, 776
GluI GCNGC 4 cut(s) 402, 455, 458, 851
GsuI CTGGAG 2 cut(s) 839, 867
HaeIII GGCC 1 cut(s) 774
HapII CCGG 3 cut(s) 40, 109, 360
Hin1II CATG 6 cut(s) 16, 235, 338, 509, 827, 975
HinfI GANTC 5 cut(s) 250, 502, 570, 623, 707
HpaII CCGG 3 cut(s) 40, 109, 360
HphI GGTGA 1 cut(s) 938
Hpy166II GTNNAC 2 cut(s) 307, 558
Hpy188I TCNGA 4 cut(s) 174, 319, 667, 891
Hpy188III TCNNGA 5 cut(s) 119, 470, 824, 884, 951
Hpy8I GTNNAC 2 cut(s) 307, 558
HpyAV CCTTC 3 cut(s) 214, 596, 978
HpyCH4V TGCA 4 cut(s) 401, 499, 655, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 856
HpyF3I CTNAG 3 cut(s) 47, 270, 489
Hsp92II CATG 6 cut(s) 16, 235, 338, 509, 827, 975
Ksp22I TGATCA 2 cut(s) 436, 820
Kzo9I GATC 7 cut(s) 111, 349, 366, 436, 820, 886, 1063
LmnI GCTCC 4 cut(s) 451, 469, 691, 858
Lsp1109I GCAGC 3 cut(s) 413, 444, 837
LweI GCATC 3 cut(s) 256, 310, 868
MaeI CTAG 3 cut(s) 158, 293, 776
MaeIII GTNAC 2 cut(s) 508, 926
MalI GATC 7 cut(s) 113, 351, 368, 438, 822, 888, 1065
MbiI CCGCTC 1 cut(s) 728
MboI GATC 7 cut(s) 111, 349, 366, 436, 820, 886, 1063
MboII GAAGA 6 cut(s) 176, 565, 686, 689, 860, 866
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 9 cut(s) 89, 149, 328, 372, 647, 744, 957, 1034, 1049
MlyI GAGTC 5 cut(s) 244, 511, 564, 617, 701
MmeI TCCRAC 1 cut(s) 598
MseI TTAA 3 cut(s) 30, 93, 105
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 2 cut(s) 457, 850
MspI CCGG 3 cut(s) 40, 109, 360
MspR9I CCNGG 2 cut(s) 41, 762
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 762
MwoI GCNNNNNNNGC 2 cut(s) 401, 856
NciI CCSGG 1 cut(s) 41
NcoI CCATGG 1 cut(s) 12
NdeII GATC 7 cut(s) 111, 349, 366, 436, 820, 886, 1063
NlaIII CATG 6 cut(s) 16, 235, 338, 509, 827, 975
NlaIV GGNNCC 3 cut(s) 351, 453, 693
NmuCI GTSAC 1 cut(s) 926
PaeR7I CTCGAG 1 cut(s) 128
PagI TCATGA 1 cut(s) 823
PkrI GCNGC 4 cut(s) 403, 456, 459, 852
PleI GAGTC 5 cut(s) 244, 510, 564, 617, 701
PpsI GAGTC 5 cut(s) 244, 510, 564, 617, 701
Psp6I CCWGG 1 cut(s) 760
PspGI CCWGG 1 cut(s) 760
PspN4I GGNNCC 3 cut(s) 351, 453, 693
PspPI GGNCC 2 cut(s) 97, 174
PspXI VCTCGAGB 1 cut(s) 128
PsuI RGATCY 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 850
RsaI GTAC 4 cut(s) 62, 83, 230, 557
RsaNI GTAC 4 cut(s) 61, 82, 229, 556
RseI CAYNNNNRTG 1 cut(s) 666
Rsr2I CGGWCCG 1 cut(s) 174
RsrII CGGWCCG 1 cut(s) 174
SaqAI TTAA 3 cut(s) 30, 93, 105
SatI GCNGC 4 cut(s) 402, 455, 458, 851
Sau3AI GATC 7 cut(s) 111, 349, 366, 436, 820, 886, 1063
Sau96I GGNCC 2 cut(s) 97, 174
SchI GAGTC 5 cut(s) 244, 511, 564, 617, 701
ScrFI CCNGG 2 cut(s) 41, 762
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 3 cut(s) 256, 310, 868
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 2 cut(s) 97, 174
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 2 cut(s) 119, 128
SmoI CTYRAG 2 cut(s) 119, 128
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 9 cut(s) 89, 149, 328, 372, 647, 744, 957, 1034, 1049
SsiI CCGC 3 cut(s) 455, 726, 983
SspMI CTAG 3 cut(s) 158, 293, 776
StyD4I CCNGG 2 cut(s) 39, 760
StyI CCWWGG 2 cut(s) 12, 190
TaqI TCGA 3 cut(s) 129, 710, 1053
TaqII GACCGA 1 cut(s) 191
TasI AATT 9 cut(s) 89, 149, 328, 372, 647, 744, 957, 1034, 1049
TatI WGTACW 3 cut(s) 81, 228, 555
TauI GCSGC 1 cut(s) 457
Tru1I TTAA 3 cut(s) 30, 93, 105
Tru9I TTAA 3 cut(s) 30, 93, 105
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 3 cut(s) 401, 457, 850
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 2 cut(s) 42, 960
VpaK11BI GGWCC 2 cut(s) 97, 174
XapI RAATTY 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 3 cut(s) 158, 293, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.