Rroxscaffold_3G00264300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001040
Physical Location & Seq
Forward (+)
57987854 .. 57989116
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264300.1

Sequence Viewer

Length: 1263 bp
ATGGAGAGTTCCATGGAGGTCGTCTCTATTAACAAGAGCCGGGGCCTGAGTTCGTATTCGTACAAGGGGGAACTCTATTTGTACATTCAATTTAAGGACCATCTTAACCGGGTGAATCTTGACAAGCTCGAGCGAAGGCAGTACCCTGAGTTGGAACTAGTGGCAGATTATCGGACGGAGGGTCTTTCCCTTGGAATGTGTCCCTTCTTAGAGATTTCAGGTAAAAAGTACATGGTTGGGGGAGAAAAGACTCGTAAGATACCCGACGCTGAGTATGATTGGGGAGAAAGTACTCAAGAGATACCTAATGCTGAGTATCAACTCGATTGGGAAGTATCCGAGCCCTCCGGTGCCCTCAATTCTCATGTTTTTGTTTTGGATCCCTTTGATGGAAAGATCACTATTGATCGTAGTTTTCCCAAAGTCAATGCAGCAAAGACCAATGCCAAAGTCTTGGCTATCATTGACCAAAAGGTGTACGTACTTGGTACTCGGGCTTACTACTATTGGGGTGTACTTCCAGATCCAGCGTTCGAGTGCTGTGATATTGTTGAAAATATGTGGGAGCCGCTGCCTGCTCCTCCTGATTATTACGACCCTCCTAAGTCCGTGCAGAGTGCTGTTACCAAATATTATTATCATTTTGTGTTTGGCAGAGGGATTTTTTTGTACACTTTAGGGGGACTCTTCAGTTTCAATGTGGATAAATCTACTGAAGGATGGAAATGGGTTGGAGACTCAAAGGGGAGGCTTGATTTGGAATTTTTGCACTACCATTCAGATGGAGAAGAAGAGGTAGAAAGGGAGCCGGATGACGATGACTCAATGCCTTTGGCACCCGCTCATCCCTACCATTCAATTTGCTTTGCAGAACCAGGGAAAGGTGGCCTAGCTGTTGGCTACACGGCTGAAGGGTTGGTGGGTTATGTCTTTGATCGTGATGGCAACATGCTATTTCAACGACTGCTCGACAGTCATAATTGTTGTCTTCCTTCTCCGTGTCAGATGATGTTTGGGGGAAAAGTTCTTCATGTGGATGGTGACAAGTTTTGTCTCATTTTGTCAGGAAAAATTGAAAGTTCTTCATGGTCATTAGCTGTGGCAACATTTAAGCTAACCATTAGTATGCTGATTTTTTATGGTCTATACAGATGTGTTGACCTATCTTATTATAAATTCTACGACGCAATTGATAAAACAAAAATTCTTCTCTACATTTATAAGAAAATAAATGTTGAACAAAGAATGATATTAGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

47.96

Weight (kDa)

5.04

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 129 - 247 5e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1173, 1221
AccB1I GGYRCC 2 cut(s) 350, 835
AccBSI CCGCTC 1 cut(s) 842
AciI CCGC 2 cut(s) 569, 840
AclWI GGATC 3 cut(s) 374, 387, 518
AcsI RAATTY 4 cut(s) 761, 1175, 1203, 1257
AcuI CTGAAG 3 cut(s) 673, 735, 930
AfiI CCNNNNNNNGG 3 cut(s) 151, 389, 881
AgsI TTSAA 7 cut(s) 89, 554, 697, 858, 959, 1076, 1238
AhdI GACNNNNNGTC 1 cut(s) 180
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 874
AluBI AGCT 4 cut(s) 127, 893, 1097, 1114
AluI AGCT 4 cut(s) 127, 893, 1097, 1114
Alw26I GTCTC 3 cut(s) 28, 729, 1058
AlwI GGATC 3 cut(s) 374, 387, 518
Ama87I CYCGRG 2 cut(s) 128, 492
AoxI GGCC 2 cut(s) 43, 886
ApeKI GCWGC 2 cut(s) 431, 571
ApoI RAATTY 4 cut(s) 761, 1175, 1203, 1257
AspS9I GGNCC 2 cut(s) 43, 97
AsuC2I CCSGG 2 cut(s) 41, 110
AsuHPI GGTGA 2 cut(s) 124, 1052
AvaI CYCGRG 2 cut(s) 128, 492
AvaII GGWCC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 355
BamHI GGATCC 1 cut(s) 379
BanI GGYRCC 2 cut(s) 350, 835
BanII GRGCYC 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 980
BbvI GCAGC 2 cut(s) 443, 558
BccI CCATC 6 cut(s) 108, 383, 714, 776, 935, 1031
BceAI ACGGC 1 cut(s) 921
BciT130I CCWGG 1 cut(s) 876
BciVI GTATCC 1 cut(s) 346
BcnI CCSGG 2 cut(s) 41, 110
BcoDI GTCTC 3 cut(s) 28, 729, 1058
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 2 cut(s) 158, 890
BfuI GTATCC 1 cut(s) 346
BisI GCNGC 3 cut(s) 432, 569, 572
BlsI GCNGC 3 cut(s) 433, 570, 573
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 3 cut(s) 41, 110, 876
Bme18I GGWCC 1 cut(s) 97
BmeRI GACNNNNNGTC 1 cut(s) 180
BmeT110I CYCGRG 2 cut(s) 128, 492
BmgT120I GGNCC 2 cut(s) 43, 97
BmiI GGNNCC 6 cut(s) 44, 352, 381, 567, 807, 837
BmrFI CCNGG 3 cut(s) 41, 110, 876
BpiI GAAGAC 1 cut(s) 980
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BpuEI CTTGAG 1 cut(s) 279
BpuMI CCSGG 2 cut(s) 41, 110
BsaAI YACGTR 1 cut(s) 481
BsaJI CCNNGG 4 cut(s) 12, 40, 190, 875
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 389, 881
BseBI CCWGG 1 cut(s) 876
BseDI CCNNGG 4 cut(s) 12, 40, 190, 875
BseGI GGATG 4 cut(s) 725, 817, 844, 1042
BseLI CCNNNNNNNGG 3 cut(s) 151, 389, 881
BseMII CTCAG 4 cut(s) 38, 138, 261, 303
BseRI GAGGAG 1 cut(s) 570
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 2 cut(s) 443, 558
BsgI GTGCAG 1 cut(s) 632
BshFI GGCC 2 cut(s) 45, 888
BshNI GGYRCC 2 cut(s) 350, 835
BsiHKCI CYCGRG 2 cut(s) 128, 492
BsiSI CCGG 4 cut(s) 40, 109, 348, 809
BslFI GGGAC 2 cut(s) 186, 696
BslI CCNNNNNNNGG 3 cut(s) 151, 389, 881
BsmAI GTCTC 3 cut(s) 28, 729, 1058
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 186, 696
BsnI GGCC 2 cut(s) 45, 888
BsoBI CYCGRG 2 cut(s) 128, 492
Bsp1286I GDGCHC 2 cut(s) 345, 355
Bsp1407I TGTACA 2 cut(s) 81, 669
Bsp143I GATC 5 cut(s) 379, 396, 406, 523, 934
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 569, 840
BspANI GGCC 2 cut(s) 45, 888
BspCNI CTCAG 4 cut(s) 39, 139, 262, 304
BspLI GGNNCC 6 cut(s) 44, 352, 381, 567, 807, 837
BspPI GGATC 3 cut(s) 374, 387, 518
BspT107I GGYRCC 2 cut(s) 350, 835
BsrBI CCGCTC 1 cut(s) 842
BsrGI TGTACA 2 cut(s) 81, 669
BssECI CCNNGG 4 cut(s) 12, 40, 190, 875
BssMI GATC 5 cut(s) 379, 396, 406, 523, 934
BssT1I CCWWGG 2 cut(s) 12, 190
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 1 cut(s) 974
Bst6I CTCTTC 2 cut(s) 692, 786
BstAUI TGTACA 2 cut(s) 81, 669
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 6 cut(s) 47, 147, 208, 270, 312, 603
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 4 cut(s) 725, 817, 844, 1042
BstKTI GATC 5 cut(s) 382, 399, 409, 526, 937
BstMAI GTCTC 3 cut(s) 28, 729, 1058
BstMBI GATC 5 cut(s) 379, 396, 406, 523, 934
BstNI CCWGG 1 cut(s) 876
BstNSI RCATGY 1 cut(s) 952
BstSCI CCNGG 3 cut(s) 39, 108, 874
BstSLI GKGCMC 1 cut(s) 355
BstSNI TACGTA 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 443, 558
BstV2I GAAGAC 1 cut(s) 980
BstX2I RGATCY 2 cut(s) 379, 523
BstXI CCANNNNNNTGG 2 cut(s) 454, 782
BstYI RGATCY 2 cut(s) 379, 523
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 2 cut(s) 45, 888
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 4 cut(s) 725, 817, 844, 1042
Cac8I GCNNGC 1 cut(s) 576
Cfr13I GGNCC 2 cut(s) 43, 97
CseI GACGC 2 cut(s) 275, 1193
CviAII CATG 6 cut(s) 13, 232, 365, 949, 1031, 1086
DdeI CTNAG 6 cut(s) 47, 147, 208, 270, 312, 603
DpnI GATC 5 cut(s) 381, 398, 408, 525, 936
DpnII GATC 5 cut(s) 379, 396, 406, 523, 934
DriI GACNNNNNGTC 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 692, 786
Eam1105I GACNNNNNGTC 1 cut(s) 180
EarI CTCTTC 2 cut(s) 692, 786
Eco105I TACGTA 1 cut(s) 481
Eco130I CCWWGG 2 cut(s) 12, 190
Eco24I GRGCYC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 3 cut(s) 673, 735, 930
Eco88I CYCGRG 2 cut(s) 128, 492
EcoO109I RGGNCCY 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 2 cut(s) 12, 190
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 2 cut(s) 12, 190
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 6 cut(s) 16, 235, 368, 952, 1034, 1089
FaqI GGGAC 2 cut(s) 186, 696
FatI CATG 6 cut(s) 12, 231, 364, 948, 1030, 1085
FauI CCCGC 1 cut(s) 847
Fnu4HI GCNGC 3 cut(s) 432, 569, 572
FokI GGATG 4 cut(s) 732, 824, 831, 1049
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 3 cut(s) 432, 569, 572
FspBI CTAG 2 cut(s) 158, 890
GluI GCNGC 3 cut(s) 432, 569, 572
HaeIII GGCC 2 cut(s) 45, 888
HapII CCGG 4 cut(s) 40, 109, 348, 809
HgaI GACGC 2 cut(s) 275, 1193
Hin1II CATG 6 cut(s) 16, 235, 368, 952, 1034, 1089
HincII GTYRAC 1 cut(s) 1159
HindII GTYRAC 1 cut(s) 1159
HinfI GANTC 5 cut(s) 115, 250, 684, 737, 821
HpaII CCGG 4 cut(s) 40, 109, 348, 809
HphI GGTGA 2 cut(s) 124, 1052
Hpy166II GTNNAC 4 cut(s) 478, 515, 672, 1159
Hpy188I TCNGA 4 cut(s) 174, 340, 781, 1005
Hpy188III TCNNGA 6 cut(s) 119, 296, 521, 584, 938, 1065
Hpy8I GTNNAC 4 cut(s) 478, 515, 672, 1159
Hpy99I CGWCG 2 cut(s) 269, 1187
HpyAV CCTTC 5 cut(s) 129, 214, 710, 905, 1002
HpyCH4III ACNGT 1 cut(s) 974
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 4 cut(s) 431, 613, 769, 869
HpyF3I CTNAG 6 cut(s) 47, 147, 208, 270, 312, 603
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 6 cut(s) 16, 235, 368, 952, 1034, 1089
Kzo9I GATC 5 cut(s) 379, 396, 406, 523, 934
LmnI GCTCC 3 cut(s) 565, 583, 805
Lsp1109I GCAGC 2 cut(s) 443, 558
MaeI CTAG 2 cut(s) 158, 890
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 622, 1040
MalI GATC 5 cut(s) 381, 398, 408, 525, 936
MbiI CCGCTC 1 cut(s) 842
MboI GATC 5 cut(s) 379, 396, 406, 523, 934
MboII GAAGA 7 cut(s) 679, 800, 803, 980, 1019, 1074, 1199
MfeI CAATTG 1 cut(s) 1188
MflI RGATCY 2 cut(s) 379, 523
MhlI GDGCHC 2 cut(s) 345, 355
MlyI GAGTC 4 cut(s) 244, 678, 731, 815
MmeI TCCRAC 2 cut(s) 132, 712
MnlI CCTC 9 cut(s) 10, 172, 355, 365, 591, 609, 650, 741, 787
MseI TTAA 4 cut(s) 30, 93, 105, 1110
MslI CAYNNNNRTG 3 cut(s) 780, 1035, 1124
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 4 cut(s) 40, 109, 348, 809
MspR9I CCNGG 3 cut(s) 41, 110, 876
MunI CAATTG 1 cut(s) 1188
MvaI CCWGG 1 cut(s) 876
NciI CCSGG 2 cut(s) 41, 110
NcoI CCATGG 1 cut(s) 12
NdeII GATC 5 cut(s) 379, 396, 406, 523, 934
NlaIII CATG 6 cut(s) 16, 235, 368, 952, 1034, 1089
NlaIV GGNNCC 6 cut(s) 44, 352, 381, 567, 807, 837
NmuCI GTSAC 1 cut(s) 1040
NspI RCATGY 1 cut(s) 952
PaeR7I CTCGAG 1 cut(s) 128
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 433, 570, 573
PleI GAGTC 4 cut(s) 244, 678, 731, 815
PpsI GAGTC 4 cut(s) 244, 678, 731, 815
Ppu21I YACGTR 1 cut(s) 481
PsiI TTATAA 2 cut(s) 1173, 1221
Psp6I CCWGG 1 cut(s) 874
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 6 cut(s) 44, 352, 381, 567, 807, 837
PspPI GGNCC 2 cut(s) 43, 97
PspXI VCTCGAGB 1 cut(s) 128
PsuI RGATCY 2 cut(s) 379, 523
RseI CAYNNNNRTG 3 cut(s) 780, 1035, 1124
SaqAI TTAA 4 cut(s) 30, 93, 105, 1110
SatI GCNGC 3 cut(s) 432, 569, 572
Sau3AI GATC 5 cut(s) 379, 396, 406, 523, 934
Sau96I GGNCC 2 cut(s) 43, 97
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 4 cut(s) 244, 678, 731, 815
ScrFI CCNGG 3 cut(s) 41, 110, 876
SduI GDGCHC 2 cut(s) 345, 355
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 97
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 3 cut(s) 780, 1035, 1124
SmlI CTYRAG 2 cut(s) 128, 294
SmoI CTYRAG 2 cut(s) 128, 294
SnaBI TACGTA 1 cut(s) 481
SpeI ACTAGT 1 cut(s) 157
SsiI CCGC 2 cut(s) 569, 840
SspI AATATT 1 cut(s) 632
SspMI CTAG 2 cut(s) 158, 890
StyD4I CCNGG 3 cut(s) 39, 108, 874
StyI CCWWGG 2 cut(s) 12, 190
TaaI ACNGT 1 cut(s) 974
TaiI ACGT 1 cut(s) 483
TaqI TCGA 4 cut(s) 129, 324, 534, 969
TatI WGTACW 5 cut(s) 81, 228, 290, 514, 669
TauI GCSGC 1 cut(s) 571
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 4 cut(s) 30, 93, 105, 1110
Tru9I TTAA 4 cut(s) 30, 93, 105, 1110
TseFI GTSAC 1 cut(s) 1040
TseI GCWGC 2 cut(s) 431, 571
Tsp45I GTSAC 1 cut(s) 1040
TspDTI ATGAA 2 cut(s) 1019, 1074
TspGWI ACGGA 3 cut(s) 191, 598, 987
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 4 cut(s) 761, 1175, 1203, 1257
XceI RCATGY 1 cut(s) 952
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 2 cut(s) 158, 890
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.