Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010783.1

Orthogroup ID

OG0001040

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1195

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010783.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ttcactggaaaaatagttggtatccttggtttgggaagaatcggcaaagcagttgccaagagagctgaggcttttagctgccccattgcctacttttccagaacagaaaaaccagaactgaagtacaagtattatcctactgttgtggaattggcctctaactgtgatgttctagttgttgcatgcccacttactgaagaaacccgccacattatcaatcgtgaagtcattgatgctttggggccaaagggtgttctcattaacattgggaggggtcatcatgttgatgagcctgctacaagtattatcctactgttctggaattggcctcatactggtgttctcattaacattgggaggggtcatcatgttgatgagcctgagttggtatctgcactgctagaaggtcgattaggtggagctggccttgatgtgtatcagaatgaaccagaagtaccagagcagctgtttgggattgaaaatgtggtgctcctgcctcatgcaggaagtgacactacagaaacttgcaatgcaatggctgaccttgttattaggaatcttgaggctcacttcttgaacaaaccattgctaacacctgtggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

201

Amino Acids

21.95

Weight (kDa)

5.59

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25891 FvH4_2g13411
rosa_chinensis	RchiOBHm_Chr2g0136121 RchiOBHm_Chr2g0138881
rosa_laevigata	RLG00000004497 RLG00000004523 RLG00000015462 RLG00000019566 RLG00000019706 RLG00000019762
rosa_multiflora	Rmu_sc0002070.1_g000013 Rmu_sc0010558.1_g000006 Rmu_sc0010783.1_g000001 Rmu_sc0010783.1_g000002 Rmu_sc0039275.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105940 Rroxscaffold_3G00264300 Rroxscaffold_7G00216760
rosa_rugosa	Rorug02G0352600 Rorug03G0322000 Rorug05G0502700 Rorug06G0507000
rosa_samantha	Rh2AG147800 Rh2AG395200 Rh2AG402800 Rh2BG153100 Rh2BG404000 Rh2BG405000 Rh2BG411800 Rh2BG411900 Rh2BG412000 Rh2BG412100 Rh2BG412200 Rh2BG412300 Rh2BG412400 Rh2BG412500 Rh2BG412600 Rh2BG412700 Rh2BG412800 Rh2BG412900 Rh2BG413000 Rh2BG413100 Rh2BG413200 Rh2BG413300 Rh2CG372000 Rh2CG381800 Rh2CG388900 Rh2DG153400 Rh2DG417000 Rh2DG423000 Rh4BG147300 Rh4DG020200 Rh4DG020600 Rh6AG011000 Rh6CG008900 Rh6DG009900 Rh7AG113700 Rh7BG116200 Rh7BG116300 Rh7CG118800
rosa_wichuraiana	Rw2G032770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	205
AcuI	CTGAAG	2 cut(s)	140, 216
AfaI	GTAC	2 cut(s)	125, 456
AfiI	CCNNNNNNNGG	3 cut(s)	31, 335, 503
AgsI	TTSAA	2 cut(s)	479, 577
AluBI	AGCT	4 cut(s)	65, 78, 422, 466
AluI	AGCT	4 cut(s)	65, 78, 422, 466
Alw21I	GWGCWC	1 cut(s)	492
AoxI	GGCC	4 cut(s)	153, 242, 326, 424
ApeKI	GCWGC	2 cut(s)	78, 463
AspS9I	GGNCC	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	499, 531
Bbv12I	GWGCWC	1 cut(s)	492
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	65, 475
BciVI	GTATCC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	173, 401
BfmI	CTRYAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	2 cut(s)	79, 464
BlsI	GCNGC	2 cut(s)	80, 465
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	243
BmsI	GCATC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	581
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 335, 503
Bse1I	ACTGG	2 cut(s)	10, 340
Bse3DI	GCAATG	4 cut(s)	84, 535, 540, 584
Bse8I	GATNNNNATC	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	3 cut(s)	31, 335, 503
BseMI	GCAATG	4 cut(s)	84, 535, 540, 584
BseMII	CTCAG	2 cut(s)	57, 372
BseNI	ACTGG	2 cut(s)	10, 340
BseXI	GCAGC	2 cut(s)	65, 475
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	4 cut(s)	155, 244, 328, 426
BsiHKAI	GWGCWC	1 cut(s)	492
BslI	CCNNNNNNNGG	3 cut(s)	31, 335, 503
BsnI	GGCC	4 cut(s)	155, 244, 328, 426
Bsp1286I	GDGCHC	1 cut(s)	492
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	4 cut(s)	155, 244, 328, 426
BspCNI	CTCAG	2 cut(s)	58, 373
BspLI	GGNNCC	1 cut(s)	243
BsrDI	GCAATG	4 cut(s)	84, 535, 540, 584
BsrI	ACTGG	2 cut(s)	10, 340
BssECI	CCNNGG	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	25
Bst4CI	ACNGT	3 cut(s)	142, 164, 315
BstC8I	GCNNGC	3 cut(s)	184, 294, 424
BstDEI	CTNAG	2 cut(s)	66, 381
BstENI	CCTNNNNNAGG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	65, 475
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	4 cut(s)	155, 244, 328, 426
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	3 cut(s)	184, 294, 424
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	124, 455
CviAII	CATG	4 cut(s)	183, 281, 368, 500
CviQI	GTAC	2 cut(s)	124, 455
DdeI	CTNAG	2 cut(s)	66, 381
Eco130I	CCWWGG	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	140, 216
EcoNI	CCTNNNNNAGG	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	4 cut(s)	186, 284, 371, 503
FaiI	YATR	5 cut(s)	184, 282, 333, 369, 501
FatI	CATG	4 cut(s)	182, 280, 367, 499
FauI	CCCGC	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	79, 464
Fsp4HI	GCNGC	2 cut(s)	79, 464
FspBI	CTAG	2 cut(s)	173, 401
GluI	GCNGC	2 cut(s)	79, 464
HaeIII	GGCC	4 cut(s)	155, 244, 328, 426
Hin1II	CATG	4 cut(s)	186, 284, 371, 503
HinfI	GANTC	2 cut(s)	39, 556
Hpy188I	TCNGA	1 cut(s)	441
Hpy188III	TCNNGA	5 cut(s)	99, 221, 319, 560, 574
HpyAV	CCTTC	1 cut(s)	398
HpyCH4III	ACNGT	3 cut(s)	142, 164, 315
HpyCH4V	TGCA	5 cut(s)	182, 395, 503, 528, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	66, 381
Hsp92II	CATG	4 cut(s)	186, 284, 371, 503
LmnI	GCTCC	2 cut(s)	419, 495
Lsp1109I	GCAGC	2 cut(s)	65, 475
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	173, 401
MaeIII	GTNAC	1 cut(s)	509
MboII	GAAGA	2 cut(s)	48, 209
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	2 cut(s)	149, 322
MnlI	CCTC	7 cut(s)	61, 166, 264, 339, 351, 507, 556
MseI	TTAA	3 cut(s)	261, 348, 604
MslI	CAYNNNNRTG	3 cut(s)	285, 336, 372
MspA1I	CMGCKG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	62
NlaIII	CATG	4 cut(s)	186, 284, 371, 503
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	1 cut(s)	186
PaeI	GCATGC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	39, 556
PkrI	GCNGC	2 cut(s)	80, 465
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	242
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
PvuII	CAGCTG	1 cut(s)	466
RsaI	GTAC	2 cut(s)	125, 456
RsaNI	GTAC	2 cut(s)	124, 455
RseI	CAYNNNNRTG	3 cut(s)	285, 336, 372
SaqAI	TTAA	3 cut(s)	261, 348, 604
SatI	GCNGC	2 cut(s)	79, 464
Sau96I	GGNCC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	8 cut(s)	67, 80, 409, 418, 424, 468, 546, 598
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	3 cut(s)	285, 336, 372
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	2 cut(s)	149, 322
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	2 cut(s)	173, 401
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	3 cut(s)	142, 164, 315
TaqI	TCGA	1 cut(s)	409
TasI	AATT	2 cut(s)	149, 322
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	39, 556
Tru1I	TTAA	3 cut(s)	261, 348, 604
Tru9I	TTAA	3 cut(s)	261, 348, 604
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	2 cut(s)	78, 463
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	501
XceI	RCATGY	1 cut(s)	186
XspI	CTAG	2 cut(s)	173, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.