Rh7AG113700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001040
Physical Location & Seq
Reverse (-)
8893775 .. 8894782
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG113700.1

Sequence Viewer

Length: 1008 bp
ATGGAGAGTTCCATGGAAGTCGTCTCTATTAACAAGAGCCGGGGGCTGAGTTCGTATTCGTACAAGGGGGTACTCTATTTGTACATTCAATTTAAGGACCATCTTAACCGGGTGAATCTTGACAAGCTCGAGCGAAGGCAGCACCCTGAGTTGGAACTAGTGGCAGATGATCGGATGGAGGGTCTTCCCCTTGGAATGTGTCCCTTCTTTGAGATTTCAGGTAAAAAGTACATGGTTGGGGGAGAAAGGACTCGTAAGATACCCGAGGTTGAGGATGACTGGGGAGAAAGGACTCAAGAGATACCCAATGCTGAGTATCAACTCGATTGGGAAGTATTCGAGCCCTCCAGTGCCCTCAATTCTCATGTTTTTGTTTTGGATCCCTTTGATGGAAAGATCACTATTGATCGTAGTTTTCCCAAAGCCAATGCAGCAAAGACCAATGCCAAAGTCTTGGCTAGCATTGACCAAAAGGTGTACGTACTTGGTACTCGGGCTTACTACTATTGGGGTGTACTTCCAGATCCAGCGTTCGAGTGCTTTGATATTGTTGAAAATAGGTGGGAGCCGCTGCCTGCTCCTCCTGATTATTACGACCCTCCTAAGTCCGTGCAGAGTGCTGTTACCAGATATTATTATCATTTTGTGGTTGGCAGAGAGATTTATTTGTACACTTTTGGGGGACTCTTTAGTTTCAATGTGGATAAACCCACTGAAGGATGGAAATGGGTTGGAGACTCAAAGTGGAGGCTTGATTTGGAATATTTGCGCCACCATTCAGATGGAGAAGAAGAGGTAGAAAGGGAGCCCGAGGACGATGACTCAATGCCTTTGCCACCCGCTCATCCCTACCATTCAATTTGCTTTGCAGAACCAGGGAAAGGTGGCCTAGCTGTTGGCTACACAGTAAAGGGTTGGTGGGTTATGTCTTTGATCGTGATGGCAACATGCTATTTCAACGGCTGCTCGACAGTCATAATGGGTGTCTTCCTTCTCCGTGTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

38.61

Weight (kDa)

5.1

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 121 - 243 7.3e-06 FKB95, Kelch-repeats domain
DUF1668 PF07893 128 - 247 1.3e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 842
AciI CCGC 2 cut(s) 569, 840
AclWI GGATC 3 cut(s) 374, 387, 518
AcuI CTGAAG 1 cut(s) 735
AfaI GTAC 9 cut(s) 62, 72, 83, 230, 479, 483, 490, 516, 671
AfiI CCNNNNNNNGG 4 cut(s) 151, 389, 716, 881
AgsI TTSAA 5 cut(s) 89, 554, 697, 858, 958
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 874
AluBI AGCT 2 cut(s) 127, 893
AluI AGCT 2 cut(s) 127, 893
Alw26I GTCTC 2 cut(s) 28, 729
AlwI GGATC 3 cut(s) 374, 387, 518
Ama87I CYCGRG 4 cut(s) 128, 263, 492, 809
AoxI GGCC 1 cut(s) 886
ApeKI GCWGC 4 cut(s) 139, 431, 571, 963
AspLEI GCGC 1 cut(s) 771
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 2 cut(s) 41, 110
AsuHPI GGTGA 1 cut(s) 124
AsuNHI GCTAGC 1 cut(s) 458
AvaI CYCGRG 4 cut(s) 128, 263, 492, 809
AvaII GGWCC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 355
BamHI GGATCC 1 cut(s) 379
BanII GRGCYC 2 cut(s) 345, 810
BbsI GAAGAC 2 cut(s) 176, 979
BbvI GCAGC 4 cut(s) 151, 443, 558, 950
BccI CCATC 6 cut(s) 108, 169, 383, 714, 776, 934
BceAI ACGGC 1 cut(s) 976
BciT130I CCWGG 1 cut(s) 876
BcnI CCSGG 2 cut(s) 41, 110
BcoDI GTCTC 2 cut(s) 28, 729
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 3 cut(s) 158, 459, 890
BisI GCNGC 5 cut(s) 140, 432, 569, 572, 964
BlsI GCNGC 5 cut(s) 141, 433, 570, 573, 965
Bme1390I CCNGG 3 cut(s) 41, 110, 876
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 4 cut(s) 128, 263, 492, 809
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 3 cut(s) 381, 567, 807
BmrFI CCNGG 3 cut(s) 41, 110, 876
BmrI ACTGGG 1 cut(s) 289
BmtI GCTAGC 1 cut(s) 462
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 176, 979
BpmI CTGGAG 1 cut(s) 331
BpuEI CTTGAG 1 cut(s) 279
BpuMI CCSGG 2 cut(s) 41, 110
BsaAI YACGTR 1 cut(s) 481
BsaJI CCNNGG 6 cut(s) 12, 40, 190, 264, 810, 875
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 389, 716, 881
Bse1I ACTGG 2 cut(s) 284, 348
BseBI CCWGG 1 cut(s) 876
BseDI CCNNGG 6 cut(s) 12, 40, 190, 264, 810, 875
BseGI GGATG 4 cut(s) 180, 280, 725, 844
BseLI CCNNNNNNNGG 4 cut(s) 151, 389, 716, 881
BseMII CTCAG 3 cut(s) 38, 138, 303
BseNI ACTGG 2 cut(s) 284, 348
BseRI GAGGAG 1 cut(s) 570
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 4 cut(s) 151, 443, 558, 950
BsgI GTGCAG 1 cut(s) 632
BshFI GGCC 1 cut(s) 888
BsiHKCI CYCGRG 4 cut(s) 128, 263, 492, 809
BsiSI CCGG 2 cut(s) 40, 109
BslFI GGGAC 2 cut(s) 186, 696
BslI CCNNNNNNNGG 4 cut(s) 151, 389, 716, 881
BsmAI GTCTC 2 cut(s) 28, 729
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 186, 696
BsnI GGCC 1 cut(s) 888
BsoBI CYCGRG 4 cut(s) 128, 263, 492, 809
Bsp1286I GDGCHC 3 cut(s) 345, 355, 810
Bsp1407I TGTACA 2 cut(s) 81, 669
Bsp143I GATC 6 cut(s) 169, 379, 396, 406, 523, 933
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 569, 840
BspANI GGCC 1 cut(s) 888
BspCNI CTCAG 3 cut(s) 39, 139, 304
BspLI GGNNCC 3 cut(s) 381, 567, 807
BspOI GCTAGC 1 cut(s) 462
BspPI GGATC 3 cut(s) 374, 387, 518
BsrBI CCGCTC 1 cut(s) 842
BsrGI TGTACA 2 cut(s) 81, 669
BsrI ACTGG 2 cut(s) 284, 348
BssECI CCNNGG 6 cut(s) 12, 40, 190, 264, 810, 875
BssMI GATC 6 cut(s) 169, 379, 396, 406, 523, 933
BssT1I CCWWGG 2 cut(s) 12, 190
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 2 cut(s) 907, 973
Bst6I CTCTTC 1 cut(s) 786
BstAUI TGTACA 2 cut(s) 81, 669
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 2 cut(s) 460, 576
BstDEI CTNAG 4 cut(s) 47, 147, 312, 603
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 4 cut(s) 180, 280, 725, 844
BstHHI GCGC 1 cut(s) 771
BstKTI GATC 6 cut(s) 172, 382, 399, 409, 526, 936
BstMAI GTCTC 2 cut(s) 28, 729
BstMBI GATC 6 cut(s) 169, 379, 396, 406, 523, 933
BstMWI GCNNNNNNNGC 2 cut(s) 139, 431
BstNI CCWGG 1 cut(s) 876
BstNSI RCATGY 1 cut(s) 951
BstSCI CCNGG 3 cut(s) 39, 108, 874
BstSLI GKGCMC 1 cut(s) 355
BstSNI TACGTA 1 cut(s) 481
BstV1I GCAGC 4 cut(s) 151, 443, 558, 950
BstV2I GAAGAC 2 cut(s) 176, 979
BstX2I RGATCY 2 cut(s) 379, 523
BstXI CCANNNNNNTGG 2 cut(s) 454, 782
BstYI RGATCY 2 cut(s) 379, 523
BsuRI GGCC 1 cut(s) 888
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 4 cut(s) 180, 280, 725, 844
BtsIMutI CAGTG 2 cut(s) 355, 711
Cac8I GCNNGC 2 cut(s) 460, 576
CfoI GCGC 1 cut(s) 771
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 9 cut(s) 61, 71, 82, 229, 478, 482, 489, 515, 670
CviAII CATG 4 cut(s) 13, 232, 365, 948
CviQI GTAC 9 cut(s) 61, 71, 82, 229, 478, 482, 489, 515, 670
DdeI CTNAG 4 cut(s) 47, 147, 312, 603
DpnI GATC 6 cut(s) 171, 381, 398, 408, 525, 935
DpnII GATC 6 cut(s) 169, 379, 396, 406, 523, 933
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
Eco105I TACGTA 1 cut(s) 481
Eco130I CCWWGG 2 cut(s) 12, 190
Eco24I GRGCYC 2 cut(s) 345, 810
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 735
Eco88I CYCGRG 4 cut(s) 128, 263, 492, 809
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 2 cut(s) 12, 190
EcoT38I GRGCYC 2 cut(s) 345, 810
ErhI CCWWGG 2 cut(s) 12, 190
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 4 cut(s) 16, 235, 368, 951
FaiI YATR 6 cut(s) 14, 233, 366, 926, 949, 977
FaqI GGGAC 2 cut(s) 186, 696
FatI CATG 4 cut(s) 12, 231, 364, 947
FauI CCCGC 1 cut(s) 847
Fnu4HI GCNGC 5 cut(s) 140, 432, 569, 572, 964
FokI GGATG 4 cut(s) 187, 287, 732, 831
FriOI GRGCYC 2 cut(s) 345, 810
Fsp4HI GCNGC 5 cut(s) 140, 432, 569, 572, 964
FspBI CTAG 3 cut(s) 158, 459, 890
GlaI GCGC 1 cut(s) 770
GluI GCNGC 5 cut(s) 140, 432, 569, 572, 964
GsuI CTGGAG 1 cut(s) 331
HaeIII GGCC 1 cut(s) 888
HapII CCGG 2 cut(s) 40, 109
HhaI GCGC 1 cut(s) 771
Hin1II CATG 4 cut(s) 16, 235, 368, 951
Hin6I GCGC 1 cut(s) 769
HinP1I GCGC 1 cut(s) 769
HinfI GANTC 6 cut(s) 115, 250, 292, 684, 737, 821
HpaII CCGG 2 cut(s) 40, 109
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 3 cut(s) 478, 515, 672
Hpy188I TCNGA 3 cut(s) 174, 781, 1004
Hpy188III TCNNGA 5 cut(s) 119, 296, 521, 584, 937
Hpy8I GTNNAC 3 cut(s) 478, 515, 672
HpyAV CCTTC 4 cut(s) 129, 214, 710, 1001
HpyCH4III ACNGT 2 cut(s) 907, 973
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 3 cut(s) 431, 613, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 431
HpyF3I CTNAG 4 cut(s) 47, 147, 312, 603
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 4 cut(s) 16, 235, 368, 951
HspAI GCGC 1 cut(s) 769
Kzo9I GATC 6 cut(s) 169, 379, 396, 406, 523, 933
LmnI GCTCC 3 cut(s) 565, 583, 805
Lsp1109I GCAGC 4 cut(s) 151, 443, 558, 950
MaeI CTAG 3 cut(s) 158, 459, 890
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 622
MalI GATC 6 cut(s) 171, 381, 398, 408, 525, 935
MbiI CCGCTC 1 cut(s) 842
MboI GATC 6 cut(s) 169, 379, 396, 406, 523, 933
MboII GAAGA 4 cut(s) 176, 800, 803, 979
MflI RGATCY 2 cut(s) 379, 523
MhlI GDGCHC 3 cut(s) 345, 355, 810
MluCI AATT 3 cut(s) 89, 358, 858
MlyI GAGTC 5 cut(s) 244, 286, 678, 731, 815
MmeI TCCRAC 2 cut(s) 132, 712
MseI TTAA 3 cut(s) 30, 93, 105
MslI CAYNNNNRTG 1 cut(s) 780
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 2 cut(s) 40, 109
MspR9I CCNGG 3 cut(s) 41, 110, 876
MvaI CCWGG 1 cut(s) 876
MwoI GCNNNNNNNGC 2 cut(s) 139, 431
NciI CCSGG 2 cut(s) 41, 110
NcoI CCATGG 1 cut(s) 12
NdeII GATC 6 cut(s) 169, 379, 396, 406, 523, 933
NheI GCTAGC 1 cut(s) 458
NlaIII CATG 4 cut(s) 16, 235, 368, 951
NlaIV GGNNCC 3 cut(s) 381, 567, 807
NspI RCATGY 1 cut(s) 951
PaeR7I CTCGAG 1 cut(s) 128
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 5 cut(s) 141, 433, 570, 573, 965
PleI GAGTC 5 cut(s) 244, 286, 678, 731, 815
PpsI GAGTC 5 cut(s) 244, 286, 678, 731, 815
Ppu21I YACGTR 1 cut(s) 481
Psp6I CCWGG 1 cut(s) 874
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 3 cut(s) 381, 567, 807
PspPI GGNCC 1 cut(s) 97
PspXI VCTCGAGB 1 cut(s) 128
PsuI RGATCY 2 cut(s) 379, 523
RsaI GTAC 9 cut(s) 62, 72, 83, 230, 479, 483, 490, 516, 671
RsaNI GTAC 9 cut(s) 61, 71, 82, 229, 478, 482, 489, 515, 670
RseI CAYNNNNRTG 1 cut(s) 780
SaqAI TTAA 3 cut(s) 30, 93, 105
SatI GCNGC 5 cut(s) 140, 432, 569, 572, 964
Sau3AI GATC 6 cut(s) 169, 379, 396, 406, 523, 933
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 5 cut(s) 244, 286, 678, 731, 815
ScrFI CCNGG 3 cut(s) 41, 110, 876
SduI GDGCHC 3 cut(s) 345, 355, 810
SetI ASST 9 cut(s) 129, 223, 270, 477, 483, 563, 798, 886, 895
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 97
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 2 cut(s) 128, 294
SmoI CTYRAG 2 cut(s) 128, 294
SnaBI TACGTA 1 cut(s) 481
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 3 cut(s) 89, 358, 858
SsiI CCGC 2 cut(s) 569, 840
SspI AATATT 1 cut(s) 764
SspMI CTAG 3 cut(s) 158, 459, 890
StyD4I CCNGG 3 cut(s) 39, 108, 874
StyI CCWWGG 2 cut(s) 12, 190
TaaI ACNGT 2 cut(s) 907, 973
TaiI ACGT 1 cut(s) 483
TaqI TCGA 5 cut(s) 129, 324, 339, 534, 968
TasI AATT 3 cut(s) 89, 358, 858
TatI WGTACW 4 cut(s) 81, 228, 514, 669
TauI GCSGC 1 cut(s) 571
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 3 cut(s) 30, 93, 105
Tru9I TTAA 3 cut(s) 30, 93, 105
TscAI CASTG 2 cut(s) 355, 718
TseI GCWGC 4 cut(s) 139, 431, 571, 963
TspGWI ACGGA 2 cut(s) 598, 986
TspRI CASTG 2 cut(s) 355, 718
VpaK11BI GGWCC 1 cut(s) 97
XceI RCATGY 1 cut(s) 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 779
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 3 cut(s) 158, 459, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.