RchiOBHm_Chr2g0136121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001040
Physical Location & Seq
Forward (+)
53372302 .. 53374305
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50694

Sequence Viewer

Length: 1290 bp
ATGGAGGAGAAGGTCGAAAACTATTTGTACTTGCAATTTAAGGATCATCTTAGAAGGGTGAATCTTAACAAGCTCGAGGAGCAAAAGGAATCTCCTGAGTTTGAACTAGTGGCAGATTTTCTGGAGGAGAAACTCCCCTATGGAATGTGTGTTTTTTTGCAAGATTCGAATAAATTGTACATGGTTGGAGGAGAAAGGATTCGGAAGAATGAAAGAGCTGGAAGGTATTGGTGGCGAGGATTTCTCGATGCTGCAAACGAACCTGACTCCTCTGGCCTCAGTTGTGATGTTTTTGTGTTAGATTCCTCCAACGGAAAAATCTCTGCTGCTCCTGGTTTTCCAAAACCAAAAGGACCAAAGATCAATGCCAGAGCTTTGGCCACCATGGGTGACAAGGTATACGTAATGAGTTTTCGGCCATATTACTATCACGGTACGCTTCCATCTCCGGCCTTTGAGTGCTATGATTCTGCAAAACAGTCATGGGAGGAGCTGCCTGTGCCTCCAAATTACTATTGTTCGTCTTCTGCTGCTACTACTTATGGGTTTCATTTTGTGCTGGGCACAAAGATTTATTTGTGCACTCCTCATGGCTTCTTTTGTTACAACGTGGATCAATCCCCACCTAAATGGGAATTCATAGAAGATGCAGAATGGCAGTTTGATCAGCTCCCCTCATATAATTCAGAAGAGGAAATGGAAGACAACAAGATTGAGGACTACTCACTGCCTCTGATACCGGCTTTGCCCTACCGTTCTATATGTTTTGCAGAACCCGGAAAAGGGGGCCTCGCCGTTGGCTATACTGCTCAAGGATTAGTGGGTTACTTCTTTGCGCCTAATGGCAGCCTACTGTATCAAGAGCCACTCAATCAGTTGAACAGCAACTCTAAGCTTCCCTCCCCCAATAGCTATTTCTTTGGTGGAAAAGTTTGCTATGTAGGTGAAAACAAATTCTGTCTCATTCTATCTGGAGAAATTGATCAAACTTCATGGTCGTGGTCGTTAGCTGTAGCAACTTTTGATGTGAAATGTAAAGCTAATGTTCACAATGGTGAAGGAGGAGGGAAACACTTCTACCATGATCTTCCTCTGTGTTATCATCAGTTTGACAATATTAATTCGTGTTTTTCTAATGCTTGCAAATATGAGAACAGCGAGTCTCCGAGGCTTTATGATTACCTTAATCTCCAGGATGCCTTCGTCATATCCTCCGAGCCTAAGAGCCAGCGTCACCACAACCACAAGCGCAAGCGGATTATGATGGGTGTAGGTTTTCAGTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

48.92

Weight (kDa)

5.55

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 92 - 213 4.5e-06 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 399
AciI CCGC 1 cut(s) 1255
AclWI GGATC 2 cut(s) 51, 621
AcoI YGGCCR 2 cut(s) 378, 416
AcsI RAATTY 2 cut(s) 635, 953
AfaI GTAC 3 cut(s) 29, 179, 436
AfiI CCNNNNNNNGG 2 cut(s) 782, 783
AgsI TTSAA 2 cut(s) 104, 880
AhlI ACTAGT 1 cut(s) 106
AjnI CCWGG 2 cut(s) 331, 1191
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AleI CACNNNNGTG 1 cut(s) 1053
AluBI AGCT 9 cut(s) 73, 218, 374, 493, 670, 895, 912, 1010, 1040
AluI AGCT 9 cut(s) 73, 218, 374, 493, 670, 895, 912, 1010, 1040
Alw21I GWGCWC 1 cut(s) 584
Alw26I GTCTC 2 cut(s) 965, 1167
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 2 cut(s) 51, 621
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 5 cut(s) 274, 378, 416, 450, 787
ApaLI GTGCAC 1 cut(s) 580
ApeKI GCWGC 5 cut(s) 251, 326, 493, 530, 846
ApoI RAATTY 2 cut(s) 635, 953
AseI ATTAAT 1 cut(s) 1119
Asp700I GAANNNNTTC 2 cut(s) 198, 1073
AspLEI GCGC 2 cut(s) 838, 1251
AspS9I GGNCC 2 cut(s) 353, 787
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 5 cut(s) 70, 401, 956, 1067, 1226
AsuII TTCGAA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 2 cut(s) 566, 584
BalI TGGCCA 1 cut(s) 380
BbsI GAAGAC 2 cut(s) 516, 708
Bbv12I GWGCWC 1 cut(s) 584
BbvI GCAGC 5 cut(s) 238, 313, 480, 517, 858
BccI CCATC 2 cut(s) 451, 1258
BceAI ACGGC 1 cut(s) 779
BciT130I CCWGG 2 cut(s) 333, 1193
BclI TGATCA 2 cut(s) 664, 982
BcnI CCSGG 1 cut(s) 777
BcoDI GTCTC 2 cut(s) 965, 1167
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 1011
BisI GCNGC 5 cut(s) 252, 327, 494, 531, 847
BlsI GCNGC 5 cut(s) 253, 328, 495, 532, 848
Bme1390I CCNGG 3 cut(s) 333, 777, 1193
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 353, 787
BmiI GGNNCC 1 cut(s) 788
BmrFI CCNGG 3 cut(s) 333, 777, 1193
BmsI GCATC 3 cut(s) 238, 637, 1186
BpiI GAAGAC 2 cut(s) 516, 708
BplI GAGNNNNNCTC 4 cut(s) 228, 260, 707, 739
BpmI CTGGAG 3 cut(s) 143, 993, 1175
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 777
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 384, 1166
Bsc4I CCNNNNNNNGG 2 cut(s) 782, 783
Bse118I RCCGGY 1 cut(s) 739
BseBI CCWGG 2 cut(s) 333, 1193
BseDI CCNNGG 2 cut(s) 384, 1166
BseGI GGATG 1 cut(s) 1201
BseLI CCNNNNNNNGG 2 cut(s) 782, 783
BseMII CTCAG 2 cut(s) 87, 292
BseRI GAGGAG 8 cut(s) 20, 92, 140, 204, 259, 503, 576, 1077
BseSI GKGCMC 2 cut(s) 566, 584
BseXI GCAGC 5 cut(s) 238, 313, 480, 517, 858
BseYI CCCAGC 1 cut(s) 559
BshFI GGCC 5 cut(s) 276, 380, 418, 452, 789
BsiHKAI GWGCWC 1 cut(s) 584
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 3 cut(s) 449, 740, 777
BslI CCNNNNNNNGG 2 cut(s) 782, 783
BsmAI GTCTC 2 cut(s) 965, 1167
BsnI GGCC 5 cut(s) 276, 380, 418, 452, 789
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 566, 584
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 6 cut(s) 43, 360, 613, 664, 982, 1084
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 1 cut(s) 1255
BspANI GGCC 5 cut(s) 276, 380, 418, 452, 789
BspCNI CTCAG 2 cut(s) 88, 291
BspLI GGNNCC 1 cut(s) 788
BspPI GGATC 2 cut(s) 51, 621
BspT104I TTCGAA 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 739
BsrGI TGTACA 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 739
BssECI CCNNGG 2 cut(s) 384, 1166
BssMI GATC 6 cut(s) 43, 360, 613, 664, 982, 1084
BssNAI GTATAC 1 cut(s) 400
BssT1I CCWWGG 1 cut(s) 384
Bst1107I GTATAC 1 cut(s) 400
Bst2UI CCWGG 2 cut(s) 333, 1193
Bst4CI ACNGT 4 cut(s) 434, 480, 755, 855
Bst6I CTCTTC 1 cut(s) 684
BstAUI TGTACA 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 1141, 1229, 1253
BstDEI CTNAG 5 cut(s) 50, 96, 278, 891, 1221
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 1201
BstHHI GCGC 2 cut(s) 838, 1251
BstKTI GATC 6 cut(s) 46, 363, 616, 667, 985, 1087
BstMAI GTCTC 2 cut(s) 965, 1167
BstMBI GATC 6 cut(s) 43, 360, 613, 664, 982, 1084
BstMWI GCNNNNNNNGC 2 cut(s) 79, 499
BstNI CCWGG 2 cut(s) 333, 1193
BstSCI CCNGG 3 cut(s) 331, 775, 1191
BstSFI CTRYAG 1 cut(s) 1011
BstSLI GKGCMC 2 cut(s) 566, 584
BstSNI TACGTA 1 cut(s) 403
BstV1I GCAGC 5 cut(s) 238, 313, 480, 517, 858
BstV2I GAAGAC 2 cut(s) 516, 708
BstXI CCANNNNNNTGG 2 cut(s) 376, 630
BstZ17I GTATAC 1 cut(s) 400
BsuRI GGCC 5 cut(s) 276, 380, 418, 452, 789
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 1201
BtsI GCAGTG 1 cut(s) 725
BtsIMutI CAGTG 1 cut(s) 725
Cac8I GCNNGC 3 cut(s) 1141, 1229, 1253
CfoI GCGC 2 cut(s) 838, 1251
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 2 cut(s) 353, 787
CseI GACGC 1 cut(s) 1220
Csp6I GTAC 3 cut(s) 28, 178, 435
CviAII CATG 6 cut(s) 181, 385, 483, 590, 993, 1082
CviQI GTAC 3 cut(s) 28, 178, 435
DdeI CTNAG 5 cut(s) 50, 96, 278, 891, 1221
DpnI GATC 6 cut(s) 45, 362, 615, 666, 984, 1086
DpnII GATC 6 cut(s) 43, 360, 613, 664, 982, 1084
EaeI YGGCCR 2 cut(s) 378, 416
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Eco105I TACGTA 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 331, 1191
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 6 cut(s) 184, 388, 486, 593, 996, 1085
FatI CATG 6 cut(s) 180, 384, 482, 589, 992, 1081
FbaI TGATCA 2 cut(s) 664, 982
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 5 cut(s) 252, 327, 494, 531, 847
FokI GGATG 1 cut(s) 1208
Fsp4HI GCNGC 5 cut(s) 252, 327, 494, 531, 847
FspBI CTAG 1 cut(s) 107
GlaI GCGC 2 cut(s) 837, 1250
GluI GCNGC 5 cut(s) 252, 327, 494, 531, 847
GsaI CCCAGC 1 cut(s) 563
GsuI CTGGAG 3 cut(s) 143, 993, 1175
HaeIII GGCC 5 cut(s) 276, 380, 418, 452, 789
HapII CCGG 3 cut(s) 449, 740, 777
HgaI GACGC 1 cut(s) 1220
HhaI GCGC 2 cut(s) 838, 1251
Hin1II CATG 6 cut(s) 184, 388, 486, 593, 996, 1085
Hin6I GCGC 2 cut(s) 836, 1249
HinP1I GCGC 2 cut(s) 836, 1249
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 8 cut(s) 61, 89, 164, 199, 266, 302, 467, 1160
HpaII CCGG 3 cut(s) 449, 740, 777
HphI GGTGA 5 cut(s) 70, 401, 956, 1067, 1226
Hpy166II GTNNAC 3 cut(s) 400, 582, 1048
Hpy188I TCNGA 5 cut(s) 204, 688, 735, 1167, 1216
Hpy188III TCNNGA 5 cut(s) 95, 122, 245, 860, 972
Hpy8I GTNNAC 3 cut(s) 400, 582, 1048
HpyAV CCTTC 5 cut(s) 4, 48, 216, 1052, 1210
HpyCH4III ACNGT 4 cut(s) 434, 480, 755, 855
HpyCH4IV ACGT 2 cut(s) 402, 609
HpyCH4V TGCA 8 cut(s) 34, 160, 254, 473, 582, 650, 770, 1143
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 499
HpyF3I CTNAG 5 cut(s) 50, 96, 278, 891, 1221
HpySE526I ACGT 2 cut(s) 402, 609
Hsp92II CATG 6 cut(s) 184, 388, 486, 593, 996, 1085
HspAI GCGC 2 cut(s) 836, 1249
Ksp22I TGATCA 2 cut(s) 664, 982
Kzo9I GATC 6 cut(s) 43, 360, 613, 664, 982, 1084
LmnI GCTCC 4 cut(s) 79, 334, 490, 675
Lsp1109I GCAGC 5 cut(s) 238, 313, 480, 517, 858
LweI GCATC 3 cut(s) 238, 637, 1186
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 402, 609
MaeIII GTNAC 4 cut(s) 389, 602, 824, 1232
MalI GATC 6 cut(s) 45, 362, 615, 666, 984, 1086
MboI GATC 6 cut(s) 43, 360, 613, 664, 982, 1084
MboII GAAGA 6 cut(s) 217, 516, 656, 701, 713, 1079
MhlI GDGCHC 2 cut(s) 566, 584
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 8 cut(s) 35, 173, 508, 635, 682, 953, 978, 1120
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 2 cut(s) 260, 1169
MmeI TCCRAC 2 cut(s) 166, 333
Mox20I TGGCCA 1 cut(s) 380
MroXI GAANNNNTTC 2 cut(s) 198, 1073
MscI TGGCCA 1 cut(s) 380
MseI TTAA 4 cut(s) 39, 66, 1119, 1185
MslI CAYNNNNRTG 3 cut(s) 628, 997, 1053
Msp20I TGGCCA 1 cut(s) 380
MspI CCGG 3 cut(s) 449, 740, 777
MspR9I CCNGG 3 cut(s) 333, 777, 1193
MvaI CCWGG 2 cut(s) 333, 1193
MwoI GCNNNNNNNGC 2 cut(s) 79, 499
NciI CCSGG 1 cut(s) 777
NcoI CCATGG 1 cut(s) 384
NdeII GATC 6 cut(s) 43, 360, 613, 664, 982, 1084
NlaIII CATG 6 cut(s) 184, 388, 486, 593, 996, 1085
NlaIV GGNNCC 1 cut(s) 788
NmuCI GTSAC 2 cut(s) 389, 1232
NspV TTCGAA 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 1053
PaeR7I CTCGAG 1 cut(s) 74
PdmI GAANNNNTTC 2 cut(s) 198, 1073
PfeI GAWTC 6 cut(s) 61, 89, 164, 199, 302, 467
PfoI TCCNGGA 1 cut(s) 1191
PkrI GCNGC 5 cut(s) 253, 328, 495, 532, 848
PleI GAGTC 2 cut(s) 260, 1168
PpsI GAGTC 2 cut(s) 260, 1168
Ppu21I YACGTR 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 1119
Psp6I CCWGG 2 cut(s) 331, 1191
PspFI CCCAGC 1 cut(s) 559
PspGI CCWGG 2 cut(s) 331, 1191
PspN4I GGNNCC 1 cut(s) 788
PspPI GGNCC 2 cut(s) 353, 787
PspXI VCTCGAGB 1 cut(s) 74
RsaI GTAC 3 cut(s) 29, 179, 436
RsaNI GTAC 3 cut(s) 28, 178, 435
RseI CAYNNNNRTG 3 cut(s) 628, 997, 1053
SaqAI TTAA 4 cut(s) 39, 66, 1119, 1185
SatI GCNGC 5 cut(s) 252, 327, 494, 531, 847
Sau3AI GATC 6 cut(s) 43, 360, 613, 664, 982, 1084
Sau96I GGNCC 2 cut(s) 353, 787
SchI GAGTC 2 cut(s) 260, 1169
ScrFI CCNGG 3 cut(s) 333, 777, 1193
SduI GDGCHC 2 cut(s) 566, 584
SfaNI GCATC 3 cut(s) 238, 637, 1186
SfcI CTRYAG 1 cut(s) 1011
Sfr274I CTCGAG 1 cut(s) 74
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 1 cut(s) 353
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 3 cut(s) 628, 997, 1053
SmlI CTYRAG 2 cut(s) 74, 810
SmoI CTYRAG 2 cut(s) 74, 810
SnaBI TACGTA 1 cut(s) 403
SpeI ACTAGT 1 cut(s) 106
Sse9I AATT 8 cut(s) 35, 173, 508, 635, 682, 953, 978, 1120
SsiI CCGC 1 cut(s) 1255
SspI AATATT 1 cut(s) 1117
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 3 cut(s) 331, 775, 1191
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 4 cut(s) 434, 480, 755, 855
TaiI ACGT 2 cut(s) 405, 612
TaqI TCGA 4 cut(s) 15, 75, 167, 246
TasI AATT 8 cut(s) 35, 173, 508, 635, 682, 953, 978, 1120
TatI WGTACW 2 cut(s) 27, 177
TfiI GAWTC 6 cut(s) 61, 89, 164, 199, 302, 467
Tru1I TTAA 4 cut(s) 39, 66, 1119, 1185
Tru9I TTAA 4 cut(s) 39, 66, 1119, 1185
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 2 cut(s) 389, 1232
TseI GCWGC 5 cut(s) 251, 326, 493, 530, 846
Tsp45I GTSAC 2 cut(s) 389, 1232
TspDTI ATGAA 4 cut(s) 225, 539, 628, 981
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 1 cut(s) 732
VneI GTGCAC 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 353
VspI ATTAAT 1 cut(s) 1119
XapI RAATTY 2 cut(s) 635, 953
XhoI CTCGAG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 399
XmnI GAANNNNTTC 2 cut(s) 198, 1073
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.