Rh2BG413300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001040
Physical Location & Seq
Reverse (-)
58337924 .. 58340473
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG413300.1

Sequence Viewer

Length: 1140 bp
ATGGGGGAGAAGGTCGAAAACTATTTGTACTTGCAATTTAAGGAACATCTTAGAAGGGTGAATCTTAACAAGCTCGAGGAGCAAAAGGAATCTCCTGAGTTTGAACTAGTGGCAGATTTTCTGGAGGAGAAACTCCCCTATGGAATGTGTGTTTTTTTGCAAGATTCGAATAAATTGTACATGGTTGGAGGAGAAAGGATTCGGAAGAATGAAACAGCTGGAAGGTATTGGTGGCAAGGATTACCCGTTGCTGCAAACGAATTTGACCCCTCTGGCCTCACTGGTGATGTTTTTGTGTTAGATTCCTCCAACGGAAAAATCTCTGCTGCTCCTGGTTTTCCAAAACCAAAAGGACCAAAGATCAATGCCAAAGCTTTGGCCACCATCGGTGACAAGGTATACGTAATGAGTTTTCGGCCATATTACTATCGAGGTACGCTTCCATCTCCAGCCTTTGAGTGCTATGATTCTGCAAAACAGTCATGGGAGGAGCTGCCTGTGCCTCCAAAATACTATCATTTGCGTTGTGCTTCTCCTACTCATGGGTTTCATTTTGTGCTGGGCCCAAAGATTTATTTGTGCACTCGGCATGGGTTCTTTTGTTACAACGTGGATCAGTCCCCACCTAAATGGGAATTCATAGTAGATGCAAAGTGGCATTATGATCGGGACACCTCATTTGAAACAGAAGTGGAAATGGTAGACCACAAGATTGAGGACTCCTCACTGCCTCTGATACCGGCTTGGCCCTACCATTCTATATGTTTTGCAGAACCGGGAAAAGGGGGCCTCGCCGTTGGCTATACTGCTCAAGGATTAGTGGGTTACTTCTTTGCGCCTAATGGCGACCTTCTGTATCAAGAGCCACTTAATCAGTTGAACAGCAACTCTAAGCTTCCCTCCCCCGATAACTATTTCTTTGGTGGAAAAGTTTGCTATGTAGGTGAAAACAAATTATGTCTCATTCTATCCGGAGAAATTGATCAAACTTCATGGTCGTTGGCTGTAGCAACTTTTGATGTGAAATGGAAAGCGGATGTTCACAATGAGAATTGGGACTTCAGCTGCATCCCAAAAAGCAGCGCAAAACCTTCTTCGTCTCCACAAAACTTGCAGAGGACAACTGGTCGGTCCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

42.99

Weight (kDa)

6.03

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 95 - 212 1.2e-06 Protein of unknown function (DUF1668)
Kelch_FKB95 PF25210 95 - 212 9.2e-06 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 399, 702
AccIII TCCGGA 1 cut(s) 971
AciI CCGC 1 cut(s) 1034
AclWI GGATC 1 cut(s) 621
AcoI YGGCCR 2 cut(s) 378, 416
AcsI RAATTY 2 cut(s) 260, 635
AcuI CTGAAG 1 cut(s) 1045
AfaI GTAC 3 cut(s) 29, 179, 436
AfiI CCNNNNNNNGG 2 cut(s) 542, 782
AgsI TTSAA 3 cut(s) 104, 683, 880
AhdI GACNNNNNGTC 1 cut(s) 1125
AhlI ACTAGT 1 cut(s) 106
AjnI CCWGG 2 cut(s) 331, 1133
AluBI AGCT 6 cut(s) 73, 218, 374, 493, 895, 1065
AluI AGCT 6 cut(s) 73, 218, 374, 493, 895, 1065
Alw21I GWGCWC 1 cut(s) 584
Alw26I GTCTC 2 cut(s) 965, 1104
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 1 cut(s) 621
Ama87I CYCGRG 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 971
AoxI GGCC 6 cut(s) 274, 378, 416, 562, 746, 787
ApaI GGGCCC 1 cut(s) 566
ApaLI GTGCAC 1 cut(s) 580
ApeKI GCWGC 5 cut(s) 251, 326, 493, 1065, 1080
ApoI RAATTY 2 cut(s) 260, 635
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 2 cut(s) 838, 1085
AspS9I GGNCC 6 cut(s) 353, 562, 563, 747, 787, 1131
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 4 cut(s) 70, 296, 401, 956
AsuII TTCGAA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 2 cut(s) 353, 1131
BaeGI GKGCMC 2 cut(s) 566, 584
BalI TGGCCA 1 cut(s) 380
BanII GRGCYC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 584
BbvI GCAGC 5 cut(s) 238, 313, 480, 1052, 1092
BccI CCATC 2 cut(s) 392, 451
BceAI ACGGC 1 cut(s) 779
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 2 cut(s) 333, 1135
BclI TGATCA 1 cut(s) 982
BcnI CCSGG 1 cut(s) 777
BcoDI GTCTC 2 cut(s) 965, 1104
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 1005
BisI GCNGC 5 cut(s) 252, 327, 494, 1066, 1081
BlsI GCNGC 5 cut(s) 253, 328, 495, 1067, 1082
Bme1390I CCNGG 3 cut(s) 333, 777, 1135
Bme18I GGWCC 2 cut(s) 353, 1131
BmeRI GACNNNNNGTC 1 cut(s) 1125
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 6 cut(s) 353, 562, 563, 747, 787, 1131
BmiI GGNNCC 2 cut(s) 564, 788
BmrFI CCNGG 3 cut(s) 333, 777, 1135
BmsI GCATC 2 cut(s) 637, 1077
BplI GAGNNNNNCTC 2 cut(s) 707, 739
BpmI CTGGAG 2 cut(s) 143, 432
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 777
BsaAI YACGTR 1 cut(s) 403
BsaWI WCCGGW 1 cut(s) 971
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 782
Bse118I RCCGGY 1 cut(s) 739
Bse1I ACTGG 2 cut(s) 286, 1129
BseAI TCCGGA 1 cut(s) 971
BseBI CCWGG 2 cut(s) 333, 1135
BseGI GGATG 2 cut(s) 1042, 1068
BseLI CCNNNNNNNGG 2 cut(s) 542, 782
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 286, 1129
BseRI GAGGAG 5 cut(s) 92, 140, 204, 503, 712
BseSI GKGCMC 2 cut(s) 566, 584
BseXI GCAGC 5 cut(s) 238, 313, 480, 1052, 1092
BseYI CCCAGC 1 cut(s) 559
BshFI GGCC 6 cut(s) 276, 380, 418, 564, 748, 789
BsiHKAI GWGCWC 1 cut(s) 584
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 3 cut(s) 740, 776, 972
BslFI GGGAC 3 cut(s) 604, 683, 1070
BslI CCNNNNNNNGG 2 cut(s) 542, 782
BsmAI GTCTC 2 cut(s) 965, 1104
BsmBI CGTCTC 1 cut(s) 1104
BsmFI GGGAC 3 cut(s) 604, 683, 1070
BsnI GGCC 6 cut(s) 276, 380, 418, 564, 748, 789
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 167
Bsp120I GGGCCC 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 566, 584
Bsp13I TCCGGA 1 cut(s) 971
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 4 cut(s) 360, 613, 664, 982
BspACI CCGC 1 cut(s) 1034
BspANI GGCC 6 cut(s) 276, 380, 418, 564, 748, 789
BspCNI CTCAG 1 cut(s) 88
BspEI TCCGGA 1 cut(s) 971
BspLI GGNNCC 2 cut(s) 564, 788
BspPI GGATC 1 cut(s) 621
BspT104I TTCGAA 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 739
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 2 cut(s) 286, 1129
BssAI RCCGGY 1 cut(s) 739
BssMI GATC 4 cut(s) 360, 613, 664, 982
BssNAI GTATAC 1 cut(s) 400
Bst1107I GTATAC 1 cut(s) 400
Bst2UI CCWGG 2 cut(s) 333, 1135
Bst4CI ACNGT 1 cut(s) 480
BstAUI TGTACA 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 167
BstDEI CTNAG 3 cut(s) 50, 96, 891
BstF5I GGATG 2 cut(s) 1042, 1068
BstHHI GCGC 2 cut(s) 838, 1085
BstKTI GATC 4 cut(s) 363, 616, 667, 985
BstMAI GTCTC 2 cut(s) 965, 1104
BstMBI GATC 4 cut(s) 360, 613, 664, 982
BstMWI GCNNNNNNNGC 2 cut(s) 79, 499
BstNI CCWGG 2 cut(s) 333, 1135
BstSCI CCNGG 3 cut(s) 331, 775, 1133
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 2 cut(s) 566, 584
BstSNI TACGTA 1 cut(s) 403
BstV1I GCAGC 5 cut(s) 238, 313, 480, 1052, 1092
BstXI CCANNNNNNTGG 2 cut(s) 376, 630
BstZ17I GTATAC 1 cut(s) 400
BsuRI GGCC 6 cut(s) 276, 380, 418, 564, 748, 789
BtsCI GGATG 2 cut(s) 1042, 1068
BtsI GCAGTG 1 cut(s) 725
BtsIMutI CAGTG 2 cut(s) 279, 725
CfoI GCGC 2 cut(s) 838, 1085
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 6 cut(s) 353, 562, 563, 747, 787, 1131
Csp6I GTAC 3 cut(s) 28, 178, 435
CspCI CAANNNNNGTGG 2 cut(s) 1092, 1127
CviAII CATG 5 cut(s) 181, 483, 542, 590, 993
CviQI GTAC 3 cut(s) 28, 178, 435
DdeI CTNAG 3 cut(s) 50, 96, 891
DpnI GATC 4 cut(s) 362, 615, 666, 984
DpnII GATC 4 cut(s) 360, 613, 664, 982
DriI GACNNNNNGTC 1 cut(s) 1125
EaeI YGGCCR 2 cut(s) 378, 416
Eam1105I GACNNNNNGTC 1 cut(s) 1125
Eco105I TACGTA 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 566
Eco47I GGWCC 2 cut(s) 353, 1131
Eco57I CTGAAG 1 cut(s) 1045
Eco88I CYCGRG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 331, 1133
EcoT38I GRGCYC 1 cut(s) 566
Esp3I CGTCTC 1 cut(s) 1104
FaeI CATG 5 cut(s) 184, 486, 545, 593, 996
FalI AAGNNNNNCTT 2 cut(s) 852, 884
FaqI GGGAC 3 cut(s) 604, 683, 1070
FatI CATG 5 cut(s) 180, 482, 541, 589, 992
FbaI TGATCA 1 cut(s) 982
FblI GTMKAC 2 cut(s) 399, 702
Fnu4HI GCNGC 5 cut(s) 252, 327, 494, 1066, 1081
FokI GGATG 2 cut(s) 1049, 1055
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 5 cut(s) 252, 327, 494, 1066, 1081
FspBI CTAG 1 cut(s) 107
GlaI GCGC 2 cut(s) 837, 1084
GluI GCNGC 5 cut(s) 252, 327, 494, 1066, 1081
GsaI CCCAGC 1 cut(s) 563
GsuI CTGGAG 2 cut(s) 143, 432
HaeIII GGCC 6 cut(s) 276, 380, 418, 564, 748, 789
HapII CCGG 3 cut(s) 740, 776, 972
HhaI GCGC 2 cut(s) 838, 1085
Hin1II CATG 5 cut(s) 184, 486, 545, 593, 996
Hin6I GCGC 2 cut(s) 836, 1083
HinP1I GCGC 2 cut(s) 836, 1083
HindIII AAGCTT 2 cut(s) 372, 893
HinfI GANTC 7 cut(s) 61, 89, 164, 199, 302, 467, 719
HpaII CCGG 3 cut(s) 740, 776, 972
HphI GGTGA 4 cut(s) 70, 296, 401, 956
Hpy166II GTNNAC 4 cut(s) 400, 582, 703, 1042
Hpy188I TCNGA 2 cut(s) 204, 735
Hpy188III TCNNGA 5 cut(s) 95, 122, 668, 860, 972
Hpy8I GTNNAC 4 cut(s) 400, 582, 703, 1042
HpyAV CCTTC 5 cut(s) 4, 48, 216, 860, 1101
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4IV ACGT 2 cut(s) 402, 609
HpyCH4V TGCA 9 cut(s) 34, 160, 254, 473, 582, 650, 770, 1068, 1114
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 499
HpyF3I CTNAG 3 cut(s) 50, 96, 891
HpySE526I ACGT 2 cut(s) 402, 609
Hsp92II CATG 5 cut(s) 184, 486, 545, 593, 996
HspAI GCGC 2 cut(s) 836, 1083
Kpn2I TCCGGA 1 cut(s) 971
Ksp22I TGATCA 1 cut(s) 982
Kzo9I GATC 4 cut(s) 360, 613, 664, 982
LmnI GCTCC 3 cut(s) 79, 334, 490
Lsp1109I GCAGC 5 cut(s) 238, 313, 480, 1052, 1092
LweI GCATC 2 cut(s) 637, 1077
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 402, 609
MaeIII GTNAC 3 cut(s) 389, 602, 824
MalI GATC 4 cut(s) 362, 615, 666, 984
MboI GATC 4 cut(s) 360, 613, 664, 982
MboII GAAGA 2 cut(s) 217, 1086
MhlI GDGCHC 2 cut(s) 566, 584
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 7 cut(s) 35, 173, 260, 635, 953, 978, 1051
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 1 cut(s) 713
MmeI TCCRAC 2 cut(s) 166, 333
Mox20I TGGCCA 1 cut(s) 380
MroI TCCGGA 1 cut(s) 971
MroXI GAANNNNTTC 1 cut(s) 198
MscI TGGCCA 1 cut(s) 380
MseI TTAA 3 cut(s) 39, 66, 870
MslI CAYNNNNRTG 1 cut(s) 628
Msp20I TGGCCA 1 cut(s) 380
MspA1I CMGCKG 2 cut(s) 218, 1065
MspI CCGG 3 cut(s) 740, 776, 972
MspR9I CCNGG 3 cut(s) 333, 777, 1135
MvaI CCWGG 2 cut(s) 333, 1135
MwoI GCNNNNNNNGC 2 cut(s) 79, 499
NciI CCSGG 1 cut(s) 777
NdeII GATC 4 cut(s) 360, 613, 664, 982
NlaIII CATG 5 cut(s) 184, 486, 545, 593, 996
NlaIV GGNNCC 2 cut(s) 564, 788
NmeAIII GCCGAG 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 389
NspV TTCGAA 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 6 cut(s) 61, 89, 164, 199, 302, 467
PkrI GCNGC 5 cut(s) 253, 328, 495, 1067, 1082
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
Ppu21I YACGTR 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 331, 1133
PspFI CCCAGC 1 cut(s) 559
PspGI CCWGG 2 cut(s) 331, 1133
PspN4I GGNNCC 2 cut(s) 564, 788
PspOMI GGGCCC 1 cut(s) 562
PspPI GGNCC 6 cut(s) 353, 562, 563, 747, 787, 1131
PspXI VCTCGAGB 1 cut(s) 74
PvuII CAGCTG 2 cut(s) 218, 1065
RsaI GTAC 3 cut(s) 29, 179, 436
RsaNI GTAC 3 cut(s) 28, 178, 435
RseI CAYNNNNRTG 1 cut(s) 628
SaqAI TTAA 3 cut(s) 39, 66, 870
SatI GCNGC 5 cut(s) 252, 327, 494, 1066, 1081
Sau3AI GATC 4 cut(s) 360, 613, 664, 982
Sau96I GGNCC 6 cut(s) 353, 562, 563, 747, 787, 1131
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 3 cut(s) 333, 777, 1135
SduI GDGCHC 2 cut(s) 566, 584
SfaNI GCATC 2 cut(s) 637, 1077
SfcI CTRYAG 1 cut(s) 1005
Sfr274I CTCGAG 1 cut(s) 74
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 2 cut(s) 353, 1131
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 74, 810
SmoI CTYRAG 2 cut(s) 74, 810
SnaBI TACGTA 1 cut(s) 403
SpeI ACTAGT 1 cut(s) 106
Sse9I AATT 7 cut(s) 35, 173, 260, 635, 953, 978, 1051
SsiI CCGC 1 cut(s) 1034
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 3 cut(s) 331, 775, 1133
TaaI ACNGT 1 cut(s) 480
TaiI ACGT 2 cut(s) 405, 612
TaqI TCGA 4 cut(s) 15, 75, 167, 430
TaqII GACCGA 1 cut(s) 1119
TasI AATT 7 cut(s) 35, 173, 260, 635, 953, 978, 1051
TatI WGTACW 2 cut(s) 27, 177
TfiI GAWTC 6 cut(s) 61, 89, 164, 199, 302, 467
Tru1I TTAA 3 cut(s) 39, 66, 870
Tru9I TTAA 3 cut(s) 39, 66, 870
TscAI CASTG 2 cut(s) 286, 732
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 5 cut(s) 251, 326, 493, 1065, 1080
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 225, 539, 628, 981
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 2 cut(s) 286, 732
VneI GTGCAC 1 cut(s) 580
VpaK11BI GGWCC 2 cut(s) 353, 1131
XapI RAATTY 2 cut(s) 260, 635
XhoI CTCGAG 1 cut(s) 74
XmiI GTMKAC 2 cut(s) 399, 702
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.