Rh2AG395200

IGR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001040
Physical Location & Seq
Forward (+)
59139641 .. 59142911
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG395200.1

Sequence Viewer

Length: 804 bp
ATGGAAGACAACAAGATTGAGGACTACTCACTGCCTCTGATACCGGCTTTGCCCTACCGTTCTATATGTTTTGCAGAACCCGGAAAAGGGGGCCTCGCCGTTGGCTATACTGCTCAAGGATTAGTGGGTTACTTCTTTGCGCCTAATGGCAACCTACTGTATCAAGAGCCACTCAATCAGTTGAACAGCAACTCTAAGCTTCCCTCCCCCAATAGCTATTTCTTTGGTGGAAAAGTTTGCTATGTAGGTGAAAACAAATTCTGTCTCATTCTATCTGGAGAAATTGATCAAACTTCATGGTCGTGGTCGTTAGCTGTAGCAACTTTTGATGTGAAATGTAAAGCTAATGTTCACAATGGTGATGGAGGAGGGAAACACTTCTACCATGATCTTCCTCTGTGTTATCGTCAGTTTGACAATATTAATTCGTGTTTTTCTAATGCTTGCAAATATGAGAACAGCGAGTCTCCGAGGCTTTATGATTACCTTAATTTCCAGGATGCCTTCGTCATATCCTCCGAGCCTAAGAGCCAGCGTCACCACAACCACAAGCGGAAGCGGATTATGATGGGTGTAGAGAAGGTTGGGATACCAGAATTATTAAATGGAGTAGGCAATGGGGTGGAAGCTCATGTGGCTAAAATTGAATCTGAGATTGGTGACTTTCAGAAGCTGCTGATCACTTGTAGTCTCATACTGAAGAAACTTGTCATCCCTATCAAACAAGGGAAGCTGATCTTGAAATACACCCACAAGTATAGGCTGGGACTCTGGAGGCCTCTAGCTCAGCCAATGAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IGR

Protein Analysis

267

Amino Acids

30.0

Weight (kDa)

8.78

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_Ribosomal_mS41 PF09597 197 - 256 3.6e-10 Small ribosomal subunit protein mS41 SAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 553, 559
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 719
AfiI CCNNNNNNNGG 2 cut(s) 86, 87
AgsI TTSAA 3 cut(s) 184, 647, 742
AjnI CCWGG 1 cut(s) 495
AjuI GAANNNNNNNTTGG 4 cut(s) 203, 235, 639, 671
AleI CACNNNNGTG 1 cut(s) 357
AluBI AGCT 8 cut(s) 199, 216, 314, 344, 629, 673, 733, 785
AluI AGCT 8 cut(s) 199, 216, 314, 344, 629, 673, 733, 785
Alw26I GTCTC 3 cut(s) 269, 471, 695
AlwNI CAGNNNCTG 1 cut(s) 673
AoxI GGCC 2 cut(s) 91, 776
ApeKI GCWGC 1 cut(s) 673
ApoI RAATTY 1 cut(s) 257
AseI ATTAAT 1 cut(s) 423
Asp700I GAANNNNTTC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 91
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 4 cut(s) 260, 371, 530, 671
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 660
BccI CCATC 2 cut(s) 356, 562
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 497
BciVI GTATCC 1 cut(s) 582
BclI TGATCA 2 cut(s) 286, 678
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 3 cut(s) 269, 471, 695
BfaI CTAG 2 cut(s) 782, 802
BfmI CTRYAG 1 cut(s) 315
BfuI GTATCC 1 cut(s) 582
BisI GCNGC 1 cut(s) 674
BlpI GCTNAGC 1 cut(s) 786
BlsI GCNGC 1 cut(s) 675
Bme1390I CCNGG 2 cut(s) 81, 497
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 2 cut(s) 81, 497
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 2 cut(s) 297, 793
Bpu1102I GCTNAGC 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 87
Bse118I RCCGGY 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 622
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 2 cut(s) 505, 711
BseLI CCNNNNNNNGG 2 cut(s) 86, 87
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 2 cut(s) 642, 800
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 660
BseYI CCCAGC 1 cut(s) 763
BshFI GGCC 2 cut(s) 93, 778
BsiSI CCGG 2 cut(s) 44, 81
BslFI GGGAC 1 cut(s) 780
BslI CCNNNNNNNGG 2 cut(s) 86, 87
BsmAI GTCTC 3 cut(s) 269, 471, 695
BsmFI GGGAC 1 cut(s) 780
BsnI GGCC 2 cut(s) 93, 778
Bsp143I GATC 4 cut(s) 286, 388, 678, 735
Bsp1720I GCTNAGC 1 cut(s) 786
BspACI CCGC 2 cut(s) 553, 559
BspANI GGCC 2 cut(s) 93, 778
BspCNI CTCAG 2 cut(s) 643, 799
BspLI GGNNCC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 4 cut(s) 286, 388, 678, 735
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 2 cut(s) 59, 159
BstC8I GCNNGC 2 cut(s) 445, 533
BstDEI CTNAG 4 cut(s) 195, 525, 651, 786
BstF5I GGATG 2 cut(s) 505, 711
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 4 cut(s) 289, 391, 681, 738
BstMAI GTCTC 3 cut(s) 269, 471, 695
BstMBI GATC 4 cut(s) 286, 388, 678, 735
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstNI CCWGG 1 cut(s) 497
BstSCI CCNGG 2 cut(s) 79, 495
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 660
BstV2I GAAGAC 1 cut(s) 12
BsuI GTATCC 1 cut(s) 582
BsuRI GGCC 2 cut(s) 93, 778
BtsCI GGATG 2 cut(s) 505, 711
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 445, 533
CaiI CAGNNNCTG 1 cut(s) 673
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 91
CseI GACGC 1 cut(s) 524
CviAII CATG 3 cut(s) 297, 386, 632
DdeI CTNAG 4 cut(s) 195, 525, 651, 786
DpnI GATC 4 cut(s) 288, 390, 680, 737
DpnII GATC 4 cut(s) 286, 388, 678, 735
Eco147I AGGCCT 1 cut(s) 778
Eco57I CTGAAG 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 495
FaeI CATG 3 cut(s) 300, 389, 635
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 1 cut(s) 780
FatI CATG 3 cut(s) 296, 385, 631
FbaI TGATCA 2 cut(s) 286, 678
Fnu4HI GCNGC 1 cut(s) 674
FokI GGATG 2 cut(s) 512, 698
Fsp4HI GCNGC 1 cut(s) 674
FspBI CTAG 2 cut(s) 782, 802
GlaI GCGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 674
GsaI CCCAGC 1 cut(s) 767
GsuI CTGGAG 2 cut(s) 297, 793
HaeIII GGCC 2 cut(s) 93, 778
HapII CCGG 2 cut(s) 44, 81
HgaI GACGC 1 cut(s) 524
HhaI GCGC 1 cut(s) 142
Hin1II CATG 3 cut(s) 300, 389, 635
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 3 cut(s) 464, 647, 768
HpaII CCGG 2 cut(s) 44, 81
HphI GGTGA 4 cut(s) 260, 371, 530, 671
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 5 cut(s) 39, 471, 520, 652, 669
Hpy188III TCNNGA 4 cut(s) 164, 276, 739, 772
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 2 cut(s) 514, 574
HpyCH4III ACNGT 2 cut(s) 59, 159
HpyCH4V TGCA 2 cut(s) 74, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpyF3I CTNAG 4 cut(s) 195, 525, 651, 786
Hsp92II CATG 3 cut(s) 300, 389, 635
HspAI GCGC 1 cut(s) 140
Ksp22I TGATCA 2 cut(s) 286, 678
Kzo9I GATC 4 cut(s) 286, 388, 678, 735
LpnPI CCDG 9 cut(s) 57, 94, 261, 482, 509, 545, 606, 749, 757
Lsp1109I GCAGC 1 cut(s) 660
LweI GCATC 1 cut(s) 490
MaeI CTAG 2 cut(s) 782, 802
MaeIII GTNAC 3 cut(s) 128, 536, 659
MalI GATC 4 cut(s) 288, 390, 680, 737
MboI GATC 4 cut(s) 286, 388, 678, 735
MboII GAAGA 3 cut(s) 17, 383, 712
MluCI AATT 6 cut(s) 257, 282, 424, 490, 596, 642
MlyI GAGTC 2 cut(s) 473, 762
MroXI GAANNNNTTC 1 cut(s) 377
MseI TTAA 3 cut(s) 423, 489, 602
MslI CAYNNNNRTG 2 cut(s) 301, 357
MspI CCGG 2 cut(s) 44, 81
MspR9I CCNGG 2 cut(s) 81, 497
MvaI CCWGG 1 cut(s) 497
MwoI GCNNNNNNNGC 1 cut(s) 635
NciI CCSGG 1 cut(s) 81
NdeII GATC 4 cut(s) 286, 388, 678, 735
NlaIII CATG 3 cut(s) 300, 389, 635
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 2 cut(s) 536, 659
OliI CACNNNNGTG 1 cut(s) 357
PceI AGGCCT 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 1 cut(s) 647
PfoI TCCNGGA 1 cut(s) 495
PkrI GCNGC 1 cut(s) 675
PleI GAGTC 2 cut(s) 472, 762
PpsI GAGTC 2 cut(s) 472, 762
PshBI ATTAAT 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 495
PspFI CCCAGC 1 cut(s) 763
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 673
RseI CAYNNNNRTG 2 cut(s) 301, 357
SaqAI TTAA 3 cut(s) 423, 489, 602
SatI GCNGC 1 cut(s) 674
Sau3AI GATC 4 cut(s) 286, 388, 678, 735
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 2 cut(s) 473, 762
ScrFI CCNGG 2 cut(s) 81, 497
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 1 cut(s) 315
SmiMI CAYNNNNRTG 2 cut(s) 301, 357
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 6 cut(s) 257, 282, 424, 490, 596, 642
SseBI AGGCCT 1 cut(s) 778
SsiI CCGC 2 cut(s) 553, 559
SspI AATATT 1 cut(s) 421
SspMI CTAG 2 cut(s) 782, 802
StuI AGGCCT 1 cut(s) 778
StyD4I CCNGG 2 cut(s) 79, 495
TaaI ACNGT 2 cut(s) 59, 159
TasI AATT 6 cut(s) 257, 282, 424, 490, 596, 642
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 3 cut(s) 423, 489, 602
Tru9I TTAA 3 cut(s) 423, 489, 602
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 2 cut(s) 536, 659
TseI GCWGC 1 cut(s) 673
Tsp45I GTSAC 2 cut(s) 536, 659
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 1 cut(s) 36
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 2 cut(s) 782, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.