RLG00000019762

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001040
Physical Location & Seq
Reverse (-)
56401211 .. 56402920
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019762

Sequence Viewer

Length: 1269 bp
ATGGGGGAGAAGGTCGAAAACTATTTGTACTTGCAATTTAAGGATCATCTTAGAAGGGTGAATCTTAACAAGATCGAGGAGCAAAAGGAATCTCCTGAGTTTGAACTAGTGGCAGATTTTCTGGAGGAGAAACTCCCCTATGGAATGTGTGTTTTTTTGCAAGATTCGAATAAATTGTACATGGTTGGAGGAGAAAGGATTCGGAAGAATGAAAGAGCTGGAAGGTATTGGTGGCAAGGATTTCCCCTTGCTGCAAACGAATTTGACCCCTCTGGCCTCACTTGTGATGTTTTTGTGTTAGATTCCTCCAACGGAAAAATCTCTGCTGCTCCTGGTTTTCCAAAACCGAAAGGACCAAAGATCAATGCCAAAGCTTTGGCCACCATCGGTGACAAGGTATACGTAATGAGTTTTCGGCCATATTACTATCAAGGTACGCTTCCATCTCCGGCCTTTGAGTGCTATGATTCTGCAAAACAGTCATGGGAGGAGCTGCCTGTGCCTCCAAATTACGATCATTCATGTTCTGCTTCTCCTACTCATGGGTTTCATTTTGTGCTGGGCCCAAAGATTTATTTGTGCACTCCTCCTGGGTTCTTTTGTTACAACATGGATCAGTCCCCACCTAAATGGGAATTCATAGAAGATGCAGAGTGGCAGTATGATTGGGACACCTCGTATGAAACAGAAGTGGAAATCGTAGACAACAAGATTGAGGACTCCTCACTGCCTCTGATACCGGCTTGGCCCTACCATTCTATATGTTTTGCAGAACCGGGAAAAGGGGGCCTCGCCGTTGGCTATACTGCTCAAGGATTAGTGGGTTACTTCTTGGCACCTAATGGCGACCTACTGTATCAAGAGCCACTTAATCAGTTGAACTCTAAGCTTCCCTCCCCCGATAACTATTTCTTTGGTGGAAAAGTTTGCTATGTAGGTGAAAACAAATTCTGTCTCATTCTATCCGCAGAAATTGATCAAACTTCATGGTCGTTGGCTGTAGCAACTTTTGATGTGAAATGGAAAGCTGATGTTCACAATGGTGATGGAGGAGGGAAACACTTCTACCATGATCTTCCTCTGTGTTATCATCAGTTTGACAATATTAATTCGTATTTTTCTAATGCTTGTGAATATGAGAACAACGAGTTTCCGAGGCTTTATGATTACTTCAATTTCCAGGATGCCTTCGTCATATCCTCCGAGCCTAAAAGCCAGCGTCACCACAACCACAAGCGCAAGCTGAGTATGATGGGTGTAGGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

423

Amino Acids

48.25

Weight (kDa)

5.11

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 98 - 212 2e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 835
AccI GTMKAC 2 cut(s) 399, 702
AciI CCGC 1 cut(s) 966
AclWI GGATC 2 cut(s) 51, 621
AcoI YGGCCR 2 cut(s) 378, 416
AcsI RAATTY 3 cut(s) 260, 635, 947
AfaI GTAC 3 cut(s) 29, 179, 436
AfiI CCNNNNNNNGG 2 cut(s) 542, 782
AgsI TTSAA 3 cut(s) 104, 880, 1174
AhlI ACTAGT 1 cut(s) 106
AjnI CCWGG 3 cut(s) 331, 589, 1179
AleI CACNNNNGTG 1 cut(s) 1041
AluBI AGCT 6 cut(s) 218, 374, 493, 889, 1028, 1243
AluI AGCT 6 cut(s) 218, 374, 493, 889, 1028, 1243
Alw21I GWGCWC 1 cut(s) 584
Alw26I GTCTC 1 cut(s) 959
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 2 cut(s) 51, 621
AoxI GGCC 7 cut(s) 274, 378, 416, 450, 562, 746, 787
ApaI GGGCCC 1 cut(s) 566
ApaLI GTGCAC 1 cut(s) 580
ApeKI GCWGC 3 cut(s) 251, 326, 493
ApoI RAATTY 3 cut(s) 260, 635, 947
AseI ATTAAT 1 cut(s) 1107
Asp700I GAANNNNTTC 2 cut(s) 198, 1061
AspLEI GCGC 1 cut(s) 1239
AspS9I GGNCC 5 cut(s) 353, 562, 563, 747, 787
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 5 cut(s) 70, 401, 950, 1055, 1214
AsuII TTCGAA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 2 cut(s) 566, 584
BalI TGGCCA 1 cut(s) 380
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 584
BbvI GCAGC 3 cut(s) 238, 313, 480
BccI CCATC 4 cut(s) 392, 451, 1040, 1246
BceAI ACGGC 1 cut(s) 779
BciT130I CCWGG 3 cut(s) 333, 591, 1181
BclI TGATCA 1 cut(s) 976
BcnI CCSGG 1 cut(s) 777
BcoDI GTCTC 1 cut(s) 959
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 999
BisI GCNGC 3 cut(s) 252, 327, 494
BlsI GCNGC 3 cut(s) 253, 328, 495
Bme1390I CCNGG 4 cut(s) 333, 591, 777, 1181
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 5 cut(s) 353, 562, 563, 747, 787
BmiI GGNNCC 3 cut(s) 564, 788, 837
BmrFI CCNGG 4 cut(s) 333, 591, 777, 1181
BmsI GCATC 2 cut(s) 637, 1174
BplI GAGNNNNNCTC 2 cut(s) 707, 739
BpmI CTGGAG 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 777
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 590, 1154
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 782
Bse118I RCCGGY 1 cut(s) 739
BseBI CCWGG 3 cut(s) 333, 591, 1181
BseDI CCNNGG 2 cut(s) 590, 1154
BseGI GGATG 1 cut(s) 1189
BseLI CCNNNNNNNGG 2 cut(s) 542, 782
BseMII CTCAG 2 cut(s) 87, 1235
BseRI GAGGAG 7 cut(s) 92, 140, 204, 503, 576, 712, 1065
BseSI GKGCMC 2 cut(s) 566, 584
BseXI GCAGC 3 cut(s) 238, 313, 480
BseYI CCCAGC 1 cut(s) 559
BshFI GGCC 7 cut(s) 276, 380, 418, 452, 564, 748, 789
BshNI GGYRCC 1 cut(s) 835
BsiHKAI GWGCWC 1 cut(s) 584
BsiSI CCGG 3 cut(s) 449, 740, 776
BslFI GGGAC 2 cut(s) 604, 683
BslI CCNNNNNNNGG 2 cut(s) 542, 782
BsmAI GTCTC 1 cut(s) 959
BsmFI GGGAC 2 cut(s) 604, 683
BsnI GGCC 7 cut(s) 276, 380, 418, 452, 564, 748, 789
Bsp119I TTCGAA 1 cut(s) 167
Bsp120I GGGCCC 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 566, 584
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 7 cut(s) 43, 72, 360, 514, 613, 976, 1072
BspACI CCGC 1 cut(s) 966
BspANI GGCC 7 cut(s) 276, 380, 418, 452, 564, 748, 789
BspCNI CTCAG 2 cut(s) 88, 1236
BspLI GGNNCC 3 cut(s) 564, 788, 837
BspPI GGATC 2 cut(s) 51, 621
BspT104I TTCGAA 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 835
BsrFI RCCGGY 1 cut(s) 739
BsrGI TGTACA 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 739
BssECI CCNNGG 2 cut(s) 590, 1154
BssMI GATC 7 cut(s) 43, 72, 360, 514, 613, 976, 1072
BssNAI GTATAC 1 cut(s) 400
Bst1107I GTATAC 1 cut(s) 400
Bst2UI CCWGG 3 cut(s) 333, 591, 1181
Bst4CI ACNGT 2 cut(s) 480, 855
BstAUI TGTACA 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 1217, 1241
BstDEI CTNAG 4 cut(s) 50, 96, 885, 1244
BstF5I GGATG 1 cut(s) 1189
BstHHI GCGC 1 cut(s) 1239
BstKTI GATC 7 cut(s) 46, 75, 363, 517, 616, 979, 1075
BstMAI GTCTC 1 cut(s) 959
BstMBI GATC 7 cut(s) 43, 72, 360, 514, 613, 976, 1072
BstMWI GCNNNNNNNGC 1 cut(s) 499
BstNI CCWGG 3 cut(s) 333, 591, 1181
BstSCI CCNGG 4 cut(s) 331, 589, 775, 1179
BstSFI CTRYAG 1 cut(s) 999
BstSLI GKGCMC 2 cut(s) 566, 584
BstSNI TACGTA 1 cut(s) 403
BstV1I GCAGC 3 cut(s) 238, 313, 480
BstXI CCANNNNNNTGG 2 cut(s) 376, 630
BstZ17I GTATAC 1 cut(s) 400
BsuRI GGCC 7 cut(s) 276, 380, 418, 452, 564, 748, 789
BtsCI GGATG 1 cut(s) 1189
BtsI GCAGTG 1 cut(s) 725
BtsIMutI CAGTG 1 cut(s) 725
Cac8I GCNNGC 2 cut(s) 1217, 1241
CfoI GCGC 1 cut(s) 1239
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 5 cut(s) 353, 562, 563, 747, 787
CseI GACGC 1 cut(s) 1208
Csp6I GTAC 3 cut(s) 28, 178, 435
CviAII CATG 7 cut(s) 181, 483, 522, 542, 610, 987, 1070
CviQI GTAC 3 cut(s) 28, 178, 435
DdeI CTNAG 4 cut(s) 50, 96, 885, 1244
DpnI GATC 7 cut(s) 45, 74, 362, 516, 615, 978, 1074
DpnII GATC 7 cut(s) 43, 72, 360, 514, 613, 976, 1072
EaeI YGGCCR 2 cut(s) 378, 416
Eco105I TACGTA 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 3 cut(s) 331, 589, 1179
EcoT38I GRGCYC 1 cut(s) 566
FaeI CATG 7 cut(s) 184, 486, 525, 545, 613, 990, 1073
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 852, 884
FaqI GGGAC 2 cut(s) 604, 683
FatI CATG 7 cut(s) 180, 482, 521, 541, 609, 986, 1069
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 2 cut(s) 399, 702
Fnu4HI GCNGC 3 cut(s) 252, 327, 494
FokI GGATG 1 cut(s) 1196
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 3 cut(s) 252, 327, 494
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 1238
GluI GCNGC 3 cut(s) 252, 327, 494
GsaI CCCAGC 1 cut(s) 563
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 7 cut(s) 276, 380, 418, 452, 564, 748, 789
HapII CCGG 3 cut(s) 449, 740, 776
HgaI GACGC 1 cut(s) 1208
HhaI GCGC 1 cut(s) 1239
Hin1II CATG 7 cut(s) 184, 486, 525, 545, 613, 990, 1073
Hin6I GCGC 1 cut(s) 1237
HinP1I GCGC 1 cut(s) 1237
HindIII AAGCTT 2 cut(s) 372, 887
HinfI GANTC 7 cut(s) 61, 89, 164, 199, 302, 467, 719
HpaII CCGG 3 cut(s) 449, 740, 776
HphI GGTGA 5 cut(s) 70, 401, 950, 1055, 1214
Hpy166II GTNNAC 4 cut(s) 400, 582, 703, 1036
Hpy188I TCNGA 4 cut(s) 204, 735, 1155, 1204
Hpy188III TCNNGA 3 cut(s) 95, 122, 860
Hpy8I GTNNAC 4 cut(s) 400, 582, 703, 1036
HpyAV CCTTC 4 cut(s) 4, 48, 216, 1198
HpyCH4III ACNGT 2 cut(s) 480, 855
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 7 cut(s) 34, 160, 254, 473, 582, 650, 770
HpyF10VI GCNNNNNNNGC 1 cut(s) 499
HpyF3I CTNAG 4 cut(s) 50, 96, 885, 1244
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 7 cut(s) 184, 486, 525, 545, 613, 990, 1073
HspAI GCGC 1 cut(s) 1237
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 7 cut(s) 43, 72, 360, 514, 613, 976, 1072
LmnI GCTCC 3 cut(s) 79, 334, 490
Lsp1109I GCAGC 3 cut(s) 238, 313, 480
LweI GCATC 2 cut(s) 637, 1174
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 4 cut(s) 389, 602, 824, 1220
MalI GATC 7 cut(s) 45, 74, 362, 516, 615, 978, 1074
MboI GATC 7 cut(s) 43, 72, 360, 514, 613, 976, 1072
MboII GAAGA 3 cut(s) 217, 656, 1067
MhlI GDGCHC 2 cut(s) 566, 584
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 9 cut(s) 35, 173, 260, 508, 635, 947, 972, 1108, 1174
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 1 cut(s) 713
MmeI TCCRAC 2 cut(s) 166, 333
Mox20I TGGCCA 1 cut(s) 380
MroXI GAANNNNTTC 2 cut(s) 198, 1061
MscI TGGCCA 1 cut(s) 380
MseI TTAA 4 cut(s) 39, 66, 870, 1107
MslI CAYNNNNRTG 2 cut(s) 628, 1041
Msp20I TGGCCA 1 cut(s) 380
MspI CCGG 3 cut(s) 449, 740, 776
MspR9I CCNGG 4 cut(s) 333, 591, 777, 1181
MvaI CCWGG 3 cut(s) 333, 591, 1181
MwoI GCNNNNNNNGC 1 cut(s) 499
NciI CCSGG 1 cut(s) 777
NdeII GATC 7 cut(s) 43, 72, 360, 514, 613, 976, 1072
NlaIII CATG 7 cut(s) 184, 486, 525, 545, 613, 990, 1073
NlaIV GGNNCC 3 cut(s) 564, 788, 837
NmuCI GTSAC 2 cut(s) 389, 1220
NspV TTCGAA 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 1041
PdmI GAANNNNTTC 2 cut(s) 198, 1061
PfeI GAWTC 6 cut(s) 61, 89, 164, 199, 302, 467
PfoI TCCNGGA 1 cut(s) 1179
PkrI GCNGC 3 cut(s) 253, 328, 495
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
Ppu21I YACGTR 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 1107
Psp6I CCWGG 3 cut(s) 331, 589, 1179
PspFI CCCAGC 1 cut(s) 559
PspGI CCWGG 3 cut(s) 331, 589, 1179
PspN4I GGNNCC 3 cut(s) 564, 788, 837
PspOMI GGGCCC 1 cut(s) 562
PspPI GGNCC 5 cut(s) 353, 562, 563, 747, 787
RsaI GTAC 3 cut(s) 29, 179, 436
RsaNI GTAC 3 cut(s) 28, 178, 435
RseI CAYNNNNRTG 2 cut(s) 628, 1041
SaqAI TTAA 4 cut(s) 39, 66, 870, 1107
SatI GCNGC 3 cut(s) 252, 327, 494
Sau3AI GATC 7 cut(s) 43, 72, 360, 514, 613, 976, 1072
Sau96I GGNCC 5 cut(s) 353, 562, 563, 747, 787
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 4 cut(s) 333, 591, 777, 1181
SduI GDGCHC 2 cut(s) 566, 584
SfaNI GCATC 2 cut(s) 637, 1174
SfcI CTRYAG 1 cut(s) 999
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 628, 1041
SmlI CTYRAG 1 cut(s) 810
SmoI CTYRAG 1 cut(s) 810
SnaBI TACGTA 1 cut(s) 403
SpeI ACTAGT 1 cut(s) 106
Sse9I AATT 9 cut(s) 35, 173, 260, 508, 635, 947, 972, 1108, 1174
SsiI CCGC 1 cut(s) 966
SspI AATATT 1 cut(s) 1105
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 4 cut(s) 331, 589, 775, 1179
TaaI ACNGT 2 cut(s) 480, 855
TaiI ACGT 1 cut(s) 405
TaqI TCGA 3 cut(s) 15, 75, 167
TasI AATT 9 cut(s) 35, 173, 260, 508, 635, 947, 972, 1108, 1174
TatI WGTACW 2 cut(s) 27, 177
TfiI GAWTC 6 cut(s) 61, 89, 164, 199, 302, 467
Tru1I TTAA 4 cut(s) 39, 66, 870, 1107
Tru9I TTAA 4 cut(s) 39, 66, 870, 1107
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 2 cut(s) 389, 1220
TseI GCWGC 3 cut(s) 251, 326, 493
Tsp45I GTSAC 2 cut(s) 389, 1220
TspDTI ATGAA 6 cut(s) 225, 510, 539, 628, 696, 975
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 1 cut(s) 732
VneI GTGCAC 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 353
VspI ATTAAT 1 cut(s) 1107
XapI RAATTY 3 cut(s) 260, 635, 947
XmiI GTMKAC 2 cut(s) 399, 702
XmnI GAANNNNTTC 2 cut(s) 198, 1061
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.