Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001040

Physical Location & Seq

Genomic Coordinates Reverse (-)

58296638 .. 58299198

Gene Structure 2561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG411800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGGGGAGAAGGTCGAAAACTATTTGTACTTGCAATTTGAGGAAAATCTTAGAAGGGTGAATCTTAACAAGCTCAAGGAGCAAAAGGAGTCTCCTGAGTTTGAACTAGTGGCAGATTTTCTGGAGGAGAAACTCCCCTATGGAATGTGTGTTTTTTTGCAAGATTCGAATAAATTGTACATGGTTGGAGGAGAAAGGATTCGGAAGAATGAAACAGCTGGAAGGTATTGGTGGCAAGGATTACCCGTTGCTGCAAACGAATTTGACCCCTCTGGCCTCACTGGTGATGTTTTTGTGTTAGATTCCTCCAACGGAAAAATCTCTGCTGCTCCTGGTTTTCCAAAACCAAAAGGACCAAAGATCAATGCCAAAGCTTTGGCCACCATCGGTAACAAGGTATACGTAATGAGTTTTCGGCCATATTACTATCGAGGTACGCTTCCATCTCCGGCCTTTGAGTGCTATGATTCTGCAAAACAGTCATGGGAGGAGCTGCCAGTGCCTCCAAAATACTATCATTTGCGTTGTGCTTCTCCTACTCATGGGTTTCATTTTGTGCTGGGCCCAAAGATTTATTTGTGCACTCGGCATGGGTTCTTTTGTTACAACGTGGATCAGTCCCCACCTAAATGGGAATTCATAGTAGATGCAAAGTGGCATTATGATCGGGACACCTCATATGAAACAGAAGTGGAAATGGTAGACCACAAGATTGAGGACTCCTCACTGCCTCTGATACCGGCTTGGCCCTACCATTCTATATGTTTTGCAGAACCGGGAAAAGGGGGCCTCGCCGTTGGCTATACTGCTCAAGGATTAGTGGGTTACTTCTTTGCGCCTAATGGCGACCTTCTGTATCAAGAGCCACTTAATCAGTTGAACAGCAACTCTAAGCTTCCCTCCCCCGATAACTATTTCTTTGGTGGAAAAGTTTGCTATGTTGGTGAAAACAAATTCTGTCTCATTCTATCCGGAGAAATTGATCAAACTTCATGGTCGTTGGCTGTAGCAACTTTTGATGTGAAATGGAAAGCGGATGTTCACAATGTTGTTGCATGCTCACTTACTGAAGAAACCCGCCACATCATCAATCGTGAAGTCATTGATGCTTTGGGGCCAAAGGGTGTTCTCATTAACATTGGGAGGGGTCATCATGTTGATGAGCCTGAGTTGGTATCTGCACTGCTAGAAGGCTCATTAGGTGGAGCTGGCCTCGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

407

Amino Acids

45.69

Weight (kDa)

5.45

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	95 - 213	9.9e-06	FKB95, Kelch-repeats domain
2-Hacid_dh_C	PF02826	350 - 407	5.7e-16	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25891 FvH4_2g13411
rosa_chinensis	RchiOBHm_Chr2g0136121 RchiOBHm_Chr2g0138881
rosa_laevigata	RLG00000004497 RLG00000004523 RLG00000015462 RLG00000019566 RLG00000019706 RLG00000019762
rosa_multiflora	Rmu_sc0002070.1_g000013 Rmu_sc0010558.1_g000006 Rmu_sc0010783.1_g000001 Rmu_sc0010783.1_g000002 Rmu_sc0039275.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105940 Rroxscaffold_3G00264300 Rroxscaffold_7G00216760
rosa_rugosa	Rorug02G0352600 Rorug03G0322000 Rorug05G0502700 Rorug06G0507000
rosa_samantha	Rh2AG147800 Rh2AG395200 Rh2AG402800 Rh2BG153100 Rh2BG404000 Rh2BG405000 Rh2BG411800 Rh2BG411900 Rh2BG412000 Rh2BG412100 Rh2BG412200 Rh2BG412300 Rh2BG412400 Rh2BG412500 Rh2BG412600 Rh2BG412700 Rh2BG412800 Rh2BG412900 Rh2BG413000 Rh2BG413100 Rh2BG413200 Rh2BG413300 Rh2CG372000 Rh2CG381800 Rh2CG388900 Rh2DG153400 Rh2DG417000 Rh2DG423000 Rh4BG147300 Rh4DG020200 Rh4DG020600 Rh6AG011000 Rh6CG008900 Rh6DG009900 Rh7AG113700 Rh7BG116200 Rh7BG116300 Rh7CG118800
rosa_wichuraiana	Rw2G032770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	399, 702
AccIII	TCCGGA	1 cut(s)	971
AciI	CCGC	2 cut(s)	1034, 1078
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	2 cut(s)	378, 416
AcsI	RAATTY	3 cut(s)	260, 635, 953
AcuI	CTGAAG	1 cut(s)	1089
AfaI	GTAC	3 cut(s)	29, 179, 436
AfiI	CCNNNNNNNGG	2 cut(s)	542, 782
AgsI	TTSAA	2 cut(s)	104, 880
AhlI	ACTAGT	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	6 cut(s)	73, 218, 374, 493, 895, 1208
AluI	AGCT	6 cut(s)	73, 218, 374, 493, 895, 1208
Alw21I	GWGCWC	1 cut(s)	584
Alw26I	GTCTC	2 cut(s)	96, 965
Alw44I	GTGCAC	1 cut(s)	580
AlwI	GGATC	1 cut(s)	621
Aor13HI	TCCGGA	1 cut(s)	971
AoxI	GGCC	9 cut(s)	274, 378, 416, 450, 562, 746, 787, 1115, 1210
ApaI	GGGCCC	1 cut(s)	566
ApaLI	GTGCAC	1 cut(s)	580
ApeKI	GCWGC	3 cut(s)	251, 326, 493
ApoI	RAATTY	3 cut(s)	260, 635, 953
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	6 cut(s)	353, 562, 563, 747, 787, 1115
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	3 cut(s)	70, 296, 956
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	353
BaeGI	GKGCMC	2 cut(s)	566, 584
BalI	TGGCCA	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	584
BbvI	GCAGC	3 cut(s)	238, 313, 480
BccI	CCATC	2 cut(s)	392, 451
BceAI	ACGGC	1 cut(s)	779
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	982
BcnI	CCSGG	1 cut(s)	777
BcoDI	GTCTC	2 cut(s)	96, 965
BcuI	ACTAGT	1 cut(s)	106
BfaI	CTAG	2 cut(s)	107, 1187
BfmI	CTRYAG	1 cut(s)	1005
BisI	GCNGC	3 cut(s)	252, 327, 494
BlsI	GCNGC	3 cut(s)	253, 328, 495
Bme1390I	CCNGG	2 cut(s)	333, 777
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	6 cut(s)	353, 562, 563, 747, 787, 1115
BmiI	GGNNCC	3 cut(s)	564, 788, 1116
BmrFI	CCNGG	2 cut(s)	333, 777
BmsI	GCATC	2 cut(s)	637, 1096
BplI	GAGNNNNNCTC	3 cut(s)	707, 739, 1197
BpmI	CTGGAG	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	59, 795
BpuMI	CCSGG	1 cut(s)	777
BsaAI	YACGTR	1 cut(s)	403
BsaWI	WCCGGW	1 cut(s)	971
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 782
Bse118I	RCCGGY	1 cut(s)	739
Bse1I	ACTGG	2 cut(s)	286, 497
BseAI	TCCGGA	1 cut(s)	971
BseBI	CCWGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	1042
BseLI	CCNNNNNNNGG	2 cut(s)	542, 782
BseMII	CTCAG	2 cut(s)	87, 1158
BseNI	ACTGG	2 cut(s)	286, 497
BseRI	GAGGAG	4 cut(s)	140, 204, 503, 712
BseSI	GKGCMC	2 cut(s)	566, 584
BseXI	GCAGC	3 cut(s)	238, 313, 480
BseYI	CCCAGC	1 cut(s)	559
BsgI	GTGCAG	1 cut(s)	1164
BshFI	GGCC	9 cut(s)	276, 380, 418, 452, 564, 748, 789, 1117, 1212
BsiHKAI	GWGCWC	1 cut(s)	584
BsiSI	CCGG	4 cut(s)	449, 740, 776, 972
BslFI	GGGAC	2 cut(s)	604, 683
BslI	CCNNNNNNNGG	2 cut(s)	542, 782
BsmAI	GTCTC	2 cut(s)	96, 965
BsmFI	GGGAC	2 cut(s)	604, 683
BsnI	GGCC	9 cut(s)	276, 380, 418, 452, 564, 748, 789, 1117, 1212
Bsp119I	TTCGAA	1 cut(s)	167
Bsp120I	GGGCCC	1 cut(s)	562
Bsp1286I	GDGCHC	2 cut(s)	566, 584
Bsp13I	TCCGGA	1 cut(s)	971
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	4 cut(s)	360, 613, 664, 982
BspACI	CCGC	2 cut(s)	1034, 1078
BspANI	GGCC	9 cut(s)	276, 380, 418, 452, 564, 748, 789, 1117, 1212
BspCNI	CTCAG	2 cut(s)	88, 1159
BspEI	TCCGGA	1 cut(s)	971
BspLI	GGNNCC	3 cut(s)	564, 788, 1116
BspPI	GGATC	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	739
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	286, 497
BssAI	RCCGGY	1 cut(s)	739
BssMI	GATC	4 cut(s)	360, 613, 664, 982
BssNAI	GTATAC	1 cut(s)	400
Bst1107I	GTATAC	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	480
BstAUI	TGTACA	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	403
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	1057, 1210
BstDEI	CTNAG	4 cut(s)	50, 96, 891, 1167
BstF5I	GGATG	1 cut(s)	1042
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	4 cut(s)	363, 616, 667, 985
BstMAI	GTCTC	2 cut(s)	96, 965
BstMBI	GATC	4 cut(s)	360, 613, 664, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 499
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	1059
BstSCI	CCNGG	2 cut(s)	331, 775
BstSFI	CTRYAG	1 cut(s)	1005
BstSLI	GKGCMC	2 cut(s)	566, 584
BstSNI	TACGTA	1 cut(s)	403
BstV1I	GCAGC	3 cut(s)	238, 313, 480
BstXI	CCANNNNNNTGG	2 cut(s)	376, 630
BstZ17I	GTATAC	1 cut(s)	400
BsuRI	GGCC	9 cut(s)	276, 380, 418, 452, 564, 748, 789, 1117, 1212
BtsCI	GGATG	1 cut(s)	1042
BtsI	GCAGTG	2 cut(s)	725, 1181
BtsIMutI	CAGTG	4 cut(s)	279, 504, 725, 1181
Cac8I	GCNNGC	2 cut(s)	1057, 1210
CfoI	GCGC	1 cut(s)	838
Cfr10I	RCCGGY	1 cut(s)	739
Cfr13I	GGNCC	6 cut(s)	353, 562, 563, 747, 787, 1115
Csp6I	GTAC	3 cut(s)	28, 178, 435
CviAII	CATG	7 cut(s)	181, 483, 542, 590, 993, 1056, 1154
CviQI	GTAC	3 cut(s)	28, 178, 435
DdeI	CTNAG	4 cut(s)	50, 96, 891, 1167
DpnI	GATC	4 cut(s)	362, 615, 666, 984
DpnII	GATC	4 cut(s)	360, 613, 664, 982
EaeI	YGGCCR	2 cut(s)	378, 416
Eco105I	TACGTA	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	1089
EcoO109I	RGGNCCY	1 cut(s)	787
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	566
FaeI	CATG	7 cut(s)	184, 486, 545, 593, 996, 1059, 1157
FalI	AAGNNNNNCTT	2 cut(s)	852, 884
FaqI	GGGAC	2 cut(s)	604, 683
FatI	CATG	7 cut(s)	180, 482, 541, 589, 992, 1055, 1153
FauI	CCCGC	1 cut(s)	1085
FauNDI	CATATG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	982
FblI	GTMKAC	2 cut(s)	399, 702
Fnu4HI	GCNGC	3 cut(s)	252, 327, 494
FokI	GGATG	1 cut(s)	1049
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	3 cut(s)	252, 327, 494
FspBI	CTAG	2 cut(s)	107, 1187
GlaI	GCGC	1 cut(s)	837
GluI	GCNGC	3 cut(s)	252, 327, 494
GsaI	CCCAGC	1 cut(s)	563
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	9 cut(s)	276, 380, 418, 452, 564, 748, 789, 1117, 1212
HapII	CCGG	4 cut(s)	449, 740, 776, 972
HhaI	GCGC	1 cut(s)	838
Hin1II	CATG	7 cut(s)	184, 486, 545, 593, 996, 1059, 1157
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HindIII	AAGCTT	2 cut(s)	372, 893
HinfI	GANTC	7 cut(s)	61, 89, 164, 199, 302, 467, 719
HpaII	CCGG	4 cut(s)	449, 740, 776, 972
HphI	GGTGA	3 cut(s)	70, 296, 956
Hpy166II	GTNNAC	4 cut(s)	400, 582, 703, 1042
Hpy188I	TCNGA	2 cut(s)	204, 735
Hpy188III	TCNNGA	6 cut(s)	95, 122, 668, 860, 972, 1094
Hpy8I	GTNNAC	4 cut(s)	400, 582, 703, 1042
HpyAV	CCTTC	5 cut(s)	4, 48, 216, 860, 1184
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	2 cut(s)	402, 609
HpyCH4V	TGCA	9 cut(s)	34, 160, 254, 473, 582, 650, 770, 1055, 1181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 499
HpyF3I	CTNAG	4 cut(s)	50, 96, 891, 1167
HpySE526I	ACGT	2 cut(s)	402, 609
Hsp92II	CATG	7 cut(s)	184, 486, 545, 593, 996, 1059, 1157
HspAI	GCGC	1 cut(s)	836
Kpn2I	TCCGGA	1 cut(s)	971
Ksp22I	TGATCA	1 cut(s)	982
Kzo9I	GATC	4 cut(s)	360, 613, 664, 982
LmnI	GCTCC	4 cut(s)	79, 334, 490, 1205
Lsp1109I	GCAGC	3 cut(s)	238, 313, 480
LweI	GCATC	2 cut(s)	637, 1096
MaeI	CTAG	2 cut(s)	107, 1187
MaeII	ACGT	2 cut(s)	402, 609
MaeIII	GTNAC	3 cut(s)	389, 602, 824
MalI	GATC	4 cut(s)	362, 615, 666, 984
MboI	GATC	4 cut(s)	360, 613, 664, 982
MboII	GAAGA	2 cut(s)	217, 1082
MhlI	GDGCHC	2 cut(s)	566, 584
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	6 cut(s)	35, 173, 260, 635, 953, 978
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	2 cut(s)	98, 713
MmeI	TCCRAC	2 cut(s)	166, 333
Mox20I	TGGCCA	1 cut(s)	380
MroI	TCCGGA	1 cut(s)	971
MroXI	GAANNNNTTC	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	3 cut(s)	66, 870, 1134
MslI	CAYNNNNRTG	2 cut(s)	628, 1158
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	4 cut(s)	449, 740, 776, 972
MspR9I	CCNGG	2 cut(s)	333, 777
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	79, 499
NciI	CCSGG	1 cut(s)	777
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	4 cut(s)	360, 613, 664, 982
NlaIII	CATG	7 cut(s)	184, 486, 545, 593, 996, 1059, 1157
NlaIV	GGNNCC	3 cut(s)	564, 788, 1116
NmeAIII	GCCGAG	1 cut(s)	565
NspI	RCATGY	1 cut(s)	1059
NspV	TTCGAA	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	1059
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	5 cut(s)	61, 164, 199, 302, 467
PkrI	GCNGC	3 cut(s)	253, 328, 495
PleI	GAGTC	2 cut(s)	97, 713
PpsI	GAGTC	2 cut(s)	97, 713
Ppu21I	YACGTR	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	3 cut(s)	564, 788, 1116
PspOMI	GGGCCC	1 cut(s)	562
PspPI	GGNCC	6 cut(s)	353, 562, 563, 747, 787, 1115
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	3 cut(s)	29, 179, 436
RsaNI	GTAC	3 cut(s)	28, 178, 435
RseI	CAYNNNNRTG	2 cut(s)	628, 1158
SaqAI	TTAA	3 cut(s)	66, 870, 1134
SatI	GCNGC	3 cut(s)	252, 327, 494
Sau3AI	GATC	4 cut(s)	360, 613, 664, 982
Sau96I	GGNCC	6 cut(s)	353, 562, 563, 747, 787, 1115
SchI	GAGTC	2 cut(s)	98, 713
ScrFI	CCNGG	2 cut(s)	333, 777
SduI	GDGCHC	2 cut(s)	566, 584
SfaNI	GCATC	2 cut(s)	637, 1096
SfcI	CTRYAG	1 cut(s)	1005
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	2 cut(s)	628, 1158
SmlI	CTYRAG	2 cut(s)	74, 810
SmoI	CTYRAG	2 cut(s)	74, 810
SnaBI	TACGTA	1 cut(s)	403
SpeI	ACTAGT	1 cut(s)	106
SphI	GCATGC	1 cut(s)	1059
Sse9I	AATT	6 cut(s)	35, 173, 260, 635, 953, 978
SsiI	CCGC	2 cut(s)	1034, 1078
SspMI	CTAG	2 cut(s)	107, 1187
StyD4I	CCNGG	2 cut(s)	331, 775
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	2 cut(s)	405, 612
TaqI	TCGA	4 cut(s)	15, 167, 430, 1215
TasI	AATT	6 cut(s)	35, 173, 260, 635, 953, 978
TatI	WGTACW	2 cut(s)	27, 177
TfiI	GAWTC	5 cut(s)	61, 164, 199, 302, 467
Tru1I	TTAA	3 cut(s)	66, 870, 1134
Tru9I	TTAA	3 cut(s)	66, 870, 1134
TscAI	CASTG	4 cut(s)	286, 504, 732, 1188
TseI	GCWGC	3 cut(s)	251, 326, 493
TspDTI	ATGAA	5 cut(s)	225, 539, 628, 696, 981
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	4 cut(s)	286, 504, 732, 1188
VneI	GTGCAC	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	3 cut(s)	260, 635, 953
XceI	RCATGY	1 cut(s)	1059
XmiI	GTMKAC	2 cut(s)	399, 702
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	107, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.