RLG00000015462

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001040
Physical Location & Seq
Reverse (-)
66414808 .. 66417448
2641 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015462

Sequence Viewer

Length: 918 bp
ATGATGATGACGACTCGCATGTCAATATATGACTTGAAGAAGCGCTCTCAATCTCATGAAGATGATGATCCGGATGACGATGACAATGGCATGAAACCCTCCCATTCGGATTACTCTGCTGCCTTCACTTTTGATGTTTTCGTAGCTCTTGCCACCATAGATGGCAAGGTATACATAAGGAGTTTGAAGCCGTATAATTATCCTTCGGGGATTCCATCGTTTGAGTGCTTTGATTCTTCGAAATTGTCTTGGGAGGAGCTGCCTGCGCCTCCTGTGAGGCCTCCTACTGTTCTGATGGATCATTATTGTTATCATTATGTGGCCATCTTTGGCGGAAAGGTTGTCCATGCGGGTGGGCCGGGTGGCAACAACTTCTGCCTTGTGTTGAATGGTTTTATCGACCCAGATTCATGGTCTTTGGGGGTAGCAATATTTGATGTGAAGTTTAAGATTGCCAATGGTGATGGAGGAGGGAAAGGCTTCTACCATGAAAATCCGCTGCATTATCATCATTTCAACAGTATTGATTCATGGTGTACTAATCCATATCAGTTTACCGGAATCCAATGCTTTATAGTTACTATGAACTCCAGGATGCTTTCATCATGGCTTAAGCTCAATAACGACAATGGCCCGTCTGCGGTGATTGTTGAAGCTAATGCAGGGCAGTTCTCATTGTCATGCAGAGGGAGGTTCCTACGAGCTTCGAAGGCCTTGGAAGAAGACTTTGTTGCAGAATTTGTGCCTTTGGAGGGAGCTGAAGAAGGAGTAGGTAGCTTCTTGGGCAGCATCTGTTCCCAGCGGTCCTTAGGCAATGCTCTTGATGCTTCTGATGATGACGATGATGAGAGAAGAATGAGAACAACAAGAGTGAAGAGCAAGCACTTGTGCCTCCAAGAACCTAACATTGTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

33.93

Weight (kDa)

5.1

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 171
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 5 cut(s) 333, 350, 497, 641, 802
AclWI GGATC 2 cut(s) 62, 306
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 1 cut(s) 737
AcuI CTGAAG 1 cut(s) 780
AfaI GTAC 1 cut(s) 538
AfeI AGCGCT 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 640, 752
AflII CTTAAG 1 cut(s) 611
AgsI TTSAA 6 cut(s) 37, 187, 388, 517, 653, 914
AjnI CCWGG 1 cut(s) 590
AluBI AGCT 7 cut(s) 146, 259, 616, 656, 704, 758, 777
AluI AGCT 7 cut(s) 146, 259, 616, 656, 704, 758, 777
AlwI GGATC 2 cut(s) 62, 306
AlwNI CAGNNNCTG 1 cut(s) 792
Aor13HI TCCGGA 1 cut(s) 70
Aor51HI AGCGCT 1 cut(s) 44
AoxI GGCC 5 cut(s) 278, 321, 356, 631, 711
ApeKI GCWGC 4 cut(s) 119, 259, 499, 786
ApoI RAATTY 1 cut(s) 737
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 2 cut(s) 45, 268
AspS9I GGNCC 3 cut(s) 356, 632, 804
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 2 cut(s) 473, 655
AsuII TTCGAA 2 cut(s) 239, 707
AvaII GGWCC 1 cut(s) 804
AxyI CCTNAGG 1 cut(s) 808
BalI TGGCCA 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 729
BbvI GCAGC 4 cut(s) 106, 246, 486, 798
BccI CCATC 5 cut(s) 155, 223, 289, 332, 458
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 592
BcnI CCSGG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 46
BfrI CTTAAG 1 cut(s) 611
BisI GCNGC 4 cut(s) 120, 260, 500, 787
BlsI GCNGC 4 cut(s) 121, 261, 501, 788
Bme1390I CCNGG 2 cut(s) 360, 592
Bme18I GGWCC 1 cut(s) 804
BmgT120I GGNCC 3 cut(s) 356, 632, 804
BmiI GGNNCC 1 cut(s) 695
BmrFI CCNGG 2 cut(s) 360, 592
BmsI GCATC 3 cut(s) 585, 798, 814
BpiI GAAGAC 1 cut(s) 729
BpmI CTGGAG 1 cut(s) 574
Bpu14I TTCGAA 2 cut(s) 239, 707
BpuMI CCSGG 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 714
BsaWI WCCGGW 2 cut(s) 70, 557
Bsc4I CCNNNNNNNGG 2 cut(s) 640, 752
Bse21I CCTNAGG 1 cut(s) 808
Bse3DI GCAATG 1 cut(s) 820
Bse8I GATNNNNATC 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 70
BseBI CCWGG 1 cut(s) 592
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 2 cut(s) 79, 600
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 2 cut(s) 640, 752
BseMI GCAATG 1 cut(s) 820
BseRI GAGGAG 2 cut(s) 269, 483
BseXI GCAGC 4 cut(s) 106, 246, 486, 798
BseYI CCCAGC 1 cut(s) 798
BshFI GGCC 5 cut(s) 280, 323, 358, 633, 713
BsiSI CCGG 3 cut(s) 71, 359, 558
BslI CCNNNNNNNGG 2 cut(s) 640, 752
BsnI GGCC 5 cut(s) 280, 323, 358, 633, 713
Bsp119I TTCGAA 2 cut(s) 239, 707
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 67, 298
BspACI CCGC 5 cut(s) 333, 350, 497, 641, 802
BspANI GGCC 5 cut(s) 280, 323, 358, 633, 713
BspEI TCCGGA 1 cut(s) 70
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 695
BspPI GGATC 2 cut(s) 62, 306
BspQI GCTCTTC 1 cut(s) 869
BspT104I TTCGAA 2 cut(s) 239, 707
BspTI CTTAAG 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 820
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 2 cut(s) 67, 298
BssNAI GTATAC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 714
Bst1107I GTATAC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 592
Bst4CI ACNGT 2 cut(s) 289, 521
Bst6I CTCTTC 1 cut(s) 869
BstAFI CTTAAG 1 cut(s) 611
BstBI TTCGAA 2 cut(s) 239, 707
BstC8I GCNNGC 2 cut(s) 264, 881
BstDEI CTNAG 1 cut(s) 808
BstF5I GGATG 2 cut(s) 79, 600
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 2 cut(s) 45, 268
BstKTI GATC 2 cut(s) 70, 301
BstMBI GATC 2 cut(s) 67, 298
BstMWI GCNNNNNNNGC 4 cut(s) 265, 710, 783, 824
BstNI CCWGG 1 cut(s) 592
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 358, 590
BstV1I GCAGC 4 cut(s) 106, 246, 486, 798
BstV2I GAAGAC 1 cut(s) 729
BstXI CCANNNNNNTGG 2 cut(s) 353, 411
BstZ17I GTATAC 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 808
BsuRI GGCC 5 cut(s) 280, 323, 358, 633, 713
BtsCI GGATG 2 cut(s) 79, 600
Cac8I GCNNGC 2 cut(s) 264, 881
CaiI CAGNNNCTG 1 cut(s) 792
CciI TCATGA 1 cut(s) 55
CfoI GCGC 2 cut(s) 45, 268
Cfr13I GGNCC 3 cut(s) 356, 632, 804
Csp6I GTAC 1 cut(s) 537
CviAII CATG 9 cut(s) 19, 56, 91, 347, 411, 488, 531, 606, 681
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 1 cut(s) 808
DpnI GATC 2 cut(s) 69, 300
DpnII GATC 2 cut(s) 67, 298
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 869
EarI CTCTTC 1 cut(s) 869
EciI GGCGGA 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 714
Eco147I AGGCCT 2 cut(s) 280, 713
Eco47I GGWCC 1 cut(s) 804
Eco47III AGCGCT 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 780
Eco81I CCTNAGG 1 cut(s) 808
EcoRII CCWGG 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 9 cut(s) 22, 59, 94, 350, 414, 491, 534, 609, 684
FatI CATG 9 cut(s) 18, 55, 90, 346, 410, 487, 530, 605, 680
FauI CCCGC 1 cut(s) 343
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 4 cut(s) 120, 260, 500, 787
FokI GGATG 2 cut(s) 86, 607
Fsp4HI GCNGC 4 cut(s) 120, 260, 500, 787
GlaI GCGC 2 cut(s) 44, 267
GluI GCNGC 4 cut(s) 120, 260, 500, 787
GsaI CCCAGC 1 cut(s) 802
GsuI CTGGAG 1 cut(s) 574
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 5 cut(s) 280, 323, 358, 633, 713
HapII CCGG 3 cut(s) 71, 359, 558
HhaI GCGC 2 cut(s) 45, 268
Hin1II CATG 9 cut(s) 22, 59, 94, 350, 414, 491, 534, 609, 684
Hin6I GCGC 2 cut(s) 43, 266
HinP1I GCGC 2 cut(s) 43, 266
HinfI GANTC 6 cut(s) 13, 211, 233, 407, 527, 561
HpaII CCGG 3 cut(s) 71, 359, 558
HphI GGTGA 2 cut(s) 473, 655
Hpy166II GTNNAC 3 cut(s) 172, 537, 555
Hpy188I TCNGA 3 cut(s) 109, 294, 832
Hpy188III TCNNGA 3 cut(s) 56, 71, 821
Hpy8I GTNNAC 3 cut(s) 172, 537, 555
HpyAV CCTTC 4 cut(s) 133, 213, 703, 758
HpyCH4III ACNGT 2 cut(s) 289, 521
HpyCH4V TGCA 4 cut(s) 502, 662, 684, 734
HpyF10VI GCNNNNNNNGC 4 cut(s) 265, 710, 783, 824
HpyF3I CTNAG 1 cut(s) 808
Hsp92II CATG 9 cut(s) 22, 59, 94, 350, 414, 491, 534, 609, 684
HspAI GCGC 2 cut(s) 43, 266
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 67, 298
LguI GCTCTTC 1 cut(s) 869
LmnI GCTCC 2 cut(s) 256, 755
Lsp1109I GCAGC 4 cut(s) 106, 246, 486, 798
LweI GCATC 3 cut(s) 585, 798, 814
MaeIII GTNAC 1 cut(s) 577
MalI GATC 2 cut(s) 69, 300
MboI GATC 2 cut(s) 67, 298
MboII GAAGA 8 cut(s) 49, 71, 228, 731, 734, 773, 864, 886
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 3 cut(s) 196, 242, 737
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 7
Mox20I TGGCCA 1 cut(s) 323
MroI TCCGGA 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 323
MseI TTAA 2 cut(s) 447, 612
MslI CAYNNNNRTG 3 cut(s) 60, 351, 679
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 2 cut(s) 499, 802
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 3 cut(s) 71, 359, 558
MspR9I CCNGG 2 cut(s) 360, 592
MvaI CCWGG 1 cut(s) 592
MwoI GCNNNNNNNGC 4 cut(s) 265, 710, 783, 824
NciI CCSGG 1 cut(s) 360
NdeII GATC 2 cut(s) 67, 298
NlaIII CATG 9 cut(s) 22, 59, 94, 350, 414, 491, 534, 609, 684
NlaIV GGNNCC 1 cut(s) 695
NspI RCATGY 1 cut(s) 22
NspV TTCGAA 2 cut(s) 239, 707
PagI TCATGA 1 cut(s) 55
PceI AGGCCT 2 cut(s) 280, 713
PciSI GCTCTTC 1 cut(s) 869
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 5 cut(s) 211, 233, 407, 527, 561
PfoI TCCNGGA 1 cut(s) 590
PkrI GCNGC 4 cut(s) 121, 261, 501, 788
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 590
PspFI CCCAGC 1 cut(s) 798
PspGI CCWGG 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 695
PspPI GGNCC 3 cut(s) 356, 632, 804
PstNI CAGNNNCTG 1 cut(s) 792
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
RseI CAYNNNNRTG 3 cut(s) 60, 351, 679
SapI GCTCTTC 1 cut(s) 869
SaqAI TTAA 2 cut(s) 447, 612
SatI GCNGC 4 cut(s) 120, 260, 500, 787
Sau3AI GATC 2 cut(s) 67, 298
Sau96I GGNCC 3 cut(s) 356, 632, 804
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 360, 592
SfaNI GCATC 3 cut(s) 585, 798, 814
SfuI TTCGAA 2 cut(s) 239, 707
SinI GGWCC 1 cut(s) 804
SmiMI CAYNNNNRTG 3 cut(s) 60, 351, 679
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 3 cut(s) 196, 242, 737
SseBI AGGCCT 2 cut(s) 280, 713
SsiI CCGC 5 cut(s) 333, 350, 497, 641, 802
SspI AATATT 1 cut(s) 432
StuI AGGCCT 2 cut(s) 280, 713
StyD4I CCNGG 2 cut(s) 358, 590
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 2 cut(s) 289, 521
TaqI TCGA 3 cut(s) 239, 399, 707
TasI AATT 3 cut(s) 196, 242, 737
TatI WGTACW 1 cut(s) 536
TfiI GAWTC 5 cut(s) 211, 233, 407, 527, 561
Tru1I TTAA 2 cut(s) 447, 612
Tru9I TTAA 2 cut(s) 447, 612
TseI GCWGC 4 cut(s) 119, 259, 499, 786
TspDTI ATGAA 7 cut(s) 72, 107, 399, 504, 519, 591, 599
Vha464I CTTAAG 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 804
XapI RAATTY 1 cut(s) 737
XceI RCATGY 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.