Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039275.1

Orthogroup ID

OG0001040

Physical Location & Seq

Genomic Coordinates Reverse (-)

2775 .. 4340

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039275.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgcggcggctctgcgagagtgaccgctatgtcaggagtgggctgtggaagaagggtgactacaagttgaccaccaagttcactggaaaaacagttggtatcatcggtatgggaagaatcggcaaagcagttgctaagagagctgaggcttttagctgccccattgcctacttttccagatcagaaaaaccagatttgaagtacaagtattatcctactgttgtggaattggcctccaactgtgatgttctagttgttgtatgcccacttactgaagaaacccgccacattatcaatcgtgaagtcatgaatgctttggggccaaagggtgttctcattaacattgggaggggtcctcatgttgatgaacctgagttggtatctgcactgctagaaggccgattaggtggagctggcctcgatgtgtatcagaatgaaccagaagtgccggaggagctgtttgggcttgaaaatgtggtgctcttgcctcatgtaggaagtggcactgtagaaactcgcaatgcaatggctgaccttgttattgggaatctagaggctcacttcttgaacaaaccattgttgacacctgtggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009853 GO:0009854 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0043094 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00130 ko00260 ko00350 ko00360 ko00630 ko00960 ko01100 ko01110 ko01130 ko01200 map00130 map00260 map00350 map00360 map00630 map00960 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

198

Amino Acids

21.75

Weight (kDa)

6.91

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25891 FvH4_2g13411
rosa_chinensis	RchiOBHm_Chr2g0136121 RchiOBHm_Chr2g0138881
rosa_laevigata	RLG00000004497 RLG00000004523 RLG00000015462 RLG00000019566 RLG00000019706 RLG00000019762
rosa_multiflora	Rmu_sc0002070.1_g000013 Rmu_sc0010558.1_g000006 Rmu_sc0010783.1_g000001 Rmu_sc0010783.1_g000002 Rmu_sc0039275.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105940 Rroxscaffold_3G00264300 Rroxscaffold_7G00216760
rosa_rugosa	Rorug02G0352600 Rorug03G0322000 Rorug05G0502700 Rorug06G0507000
rosa_samantha	Rh2AG147800 Rh2AG395200 Rh2AG402800 Rh2BG153100 Rh2BG404000 Rh2BG405000 Rh2BG411800 Rh2BG411900 Rh2BG412000 Rh2BG412100 Rh2BG412200 Rh2BG412300 Rh2BG412400 Rh2BG412500 Rh2BG412600 Rh2BG412700 Rh2BG412800 Rh2BG412900 Rh2BG413000 Rh2BG413100 Rh2BG413200 Rh2BG413300 Rh2CG372000 Rh2CG381800 Rh2CG388900 Rh2DG153400 Rh2DG417000 Rh2DG423000 Rh4BG147300 Rh4DG020200 Rh4DG020600 Rh6AG011000 Rh6CG008900 Rh6DG009900 Rh7AG113700 Rh7BG116200 Rh7BG116300 Rh7CG118800
rosa_wichuraiana	Rw2G032770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AciI	CCGC	4 cut(s)	4, 7, 25, 283
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	3 cut(s)	199, 470, 568
AluBI	AGCT	4 cut(s)	143, 156, 413, 457
AluI	AGCT	4 cut(s)	143, 156, 413, 457
Alw21I	GWGCWC	1 cut(s)	483
AoxI	GGCC	4 cut(s)	231, 320, 397, 415
ApeKI	GCWGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	320, 353
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	353
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
Bbv12I	GWGCWC	1 cut(s)	483
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	143
BfaI	CTAG	3 cut(s)	251, 392, 551
BfmI	CTRYAG	1 cut(s)	507
BisI	GCNGC	3 cut(s)	5, 8, 157
BlsI	GCNGC	3 cut(s)	6, 9, 158
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	320, 353
BmiI	GGNNCC	2 cut(s)	321, 354
BplI	GAGNNNNNCTC	4 cut(s)	340, 372, 402, 434
Bpu10I	CCTNAGC	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	3 cut(s)	162, 526, 531
Bse8I	GATNNNNATC	1 cut(s)	426
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMI	GCAATG	3 cut(s)	162, 526, 531
BseMII	CTCAG	2 cut(s)	135, 363
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	4 cut(s)	233, 322, 399, 417
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	4 cut(s)	233, 322, 399, 417
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	1 cut(s)	179
BspACI	CCGC	4 cut(s)	4, 7, 25, 283
BspANI	GGCC	4 cut(s)	233, 322, 399, 417
BspCNI	CTCAG	2 cut(s)	136, 364
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	321, 354
BsrDI	GCAATG	3 cut(s)	162, 526, 531
BsrI	ACTGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	179
Bst4CI	ACNGT	4 cut(s)	94, 220, 242, 508
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	3 cut(s)	135, 144, 372
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstKTI	GATC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 454, 463
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	1 cut(s)	143
BsuRI	GGCC	4 cut(s)	233, 322, 399, 417
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	3 cut(s)	81, 386, 504
Cac8I	GCNNGC	1 cut(s)	415
CciI	TCATGA	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	320, 353
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	307, 359, 491
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	135, 144, 372
DpnI	GATC	1 cut(s)	181
DpnII	GATC	1 cut(s)	179
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	294
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	353
FaeI	CATG	3 cut(s)	310, 362, 494
FaiI	YATR	6 cut(s)	30, 110, 262, 308, 360, 492
FatI	CATG	3 cut(s)	306, 358, 490
FauI	CCCGC	1 cut(s)	290
Fnu4HI	GCNGC	3 cut(s)	5, 8, 157
Fsp4HI	GCNGC	3 cut(s)	5, 8, 157
FspBI	CTAG	3 cut(s)	251, 392, 551
GluI	GCNGC	3 cut(s)	5, 8, 157
HaeIII	GGCC	4 cut(s)	233, 322, 399, 417
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	3 cut(s)	310, 362, 494
HincII	GTYRAC	2 cut(s)	69, 582
HindII	GTYRAC	2 cut(s)	69, 582
HinfI	GANTC	2 cut(s)	117, 547
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	3 cut(s)	69, 81, 582
Hpy188I	TCNGA	2 cut(s)	184, 432
Hpy188III	TCNNGA	6 cut(s)	34, 177, 299, 307, 551, 565
Hpy8I	GTNNAC	3 cut(s)	69, 81, 582
HpyAV	CCTTC	2 cut(s)	46, 389
HpyCH4III	ACNGT	4 cut(s)	94, 220, 242, 508
HpyCH4V	TGCA	2 cut(s)	386, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 454, 463
HpyF3I	CTNAG	3 cut(s)	135, 144, 372
Hsp92II	CATG	3 cut(s)	310, 362, 494
Kzo9I	GATC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	410, 454
LpnPI	CCDG	8 cut(s)	19, 69, 190, 204, 384, 399, 453, 462
Lsp1109I	GCAGC	1 cut(s)	143
MaeI	CTAG	3 cut(s)	251, 392, 551
MaeIII	GTNAC	2 cut(s)	20, 56
MalI	GATC	1 cut(s)	181
MboI	GATC	1 cut(s)	179
MboII	GAAGA	3 cut(s)	61, 126, 287
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	8 cut(s)	139, 244, 342, 366, 428, 445, 498, 547
MseI	TTAA	2 cut(s)	339, 595
MslI	CAYNNNNRTG	2 cut(s)	107, 363
MspI	CCGG	1 cut(s)	449
Mva1269I	GAATGC	1 cut(s)	316
MwoI	GCNNNNNNNGC	3 cut(s)	140, 454, 463
NdeII	GATC	1 cut(s)	179
NlaIII	CATG	3 cut(s)	310, 362, 494
NlaIV	GGNNCC	2 cut(s)	321, 354
NmuCI	GTSAC	2 cut(s)	20, 56
PagI	TCATGA	1 cut(s)	306
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	117, 547
PkrI	GCNGC	3 cut(s)	6, 9, 158
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	321, 354
PspPI	GGNCC	2 cut(s)	320, 353
PspPPI	RGGWCCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	2 cut(s)	107, 363
SaqAI	TTAA	2 cut(s)	339, 595
SatI	GCNGC	3 cut(s)	5, 8, 157
Sau3AI	GATC	1 cut(s)	179
Sau96I	GGNCC	2 cut(s)	320, 353
SduI	GDGCHC	1 cut(s)	483
SetI	ASST	8 cut(s)	145, 158, 373, 409, 415, 459, 537, 589
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	2 cut(s)	107, 363
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	4 cut(s)	4, 7, 25, 283
SspMI	CTAG	3 cut(s)	251, 392, 551
TaaI	ACNGT	4 cut(s)	94, 220, 242, 508
TaqI	TCGA	1 cut(s)	420
TasI	AATT	1 cut(s)	227
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	2 cut(s)	7, 10
TfiI	GAWTC	2 cut(s)	117, 547
Tru1I	TTAA	2 cut(s)	339, 595
Tru9I	TTAA	2 cut(s)	339, 595
TscAI	CASTG	3 cut(s)	88, 393, 511
TseFI	GTSAC	2 cut(s)	20, 56
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	2 cut(s)	20, 56
TspDTI	ATGAA	3 cut(s)	323, 381, 450
TspRI	CASTG	3 cut(s)	88, 393, 511
VpaK11BI	GGWCC	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	492
XbaI	TCTAGA	1 cut(s)	550
XspI	CTAG	3 cut(s)	251, 392, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.