Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Forward (+)

14812959 .. 14814869

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAAGACCCTGAAAACTATGAAACCATTTCCATGGTTTTCAACAAATCTAGCAGATTTGGTAGACTTCAGACTGTCAAGTGTGCTGTTGCCGGGAAGAACCTTTACATGAGATTCACCTGCAGCACAGGTGATGCTATGGGGATGAACATGGTCTCTAAAGGTGTTCAAAACGTTCTCGATTTCCTCCAGAATGACTTCCCTGACATGGATGTCATTGGCATATCCGGTAACTACTGCTCAGACAAGAAGCCTGCTGCTGTTAACTGGATCGAAGGCCGTGGCAAATCTGTGGTTTGCGAGGCTGTGATCAAGGGAGACATAGTGTCAAAGGTGTTGAAAACCAACGTCGCCGCCTTGGTGGAGCTTAACATGCTCAAGAATCTTACTGGATCCGCTATTGCTGGTGCTCTTGGTGGTTTCAATGCACATGCCAGTAACATTGTTTCAGCCGTCTACCTTGCCACTGGTCAAGACCCGGCTCAAAACATTGAGAGCTCTCACTGTATCACCATGATGGAAGCTATCAATGATGGAAAGGATCTGCACGTCTCAGTGACCATGCCTTCTATTGAGGTTGGCACAGTAGGAGGAGGAACCCAACTTGCATCTCAGTCTGCTTGTTTGAACTTGCTTGGAGTGAAGGGTGCTAACAGAGAGGCACCAGGAACAAACGCAAGGCAGTTGGCCAGTGTTGTAGCTGGTTCTGTTCTTGCCGGAGAGCTATCTCTCATGTCTGCTATTGCAGCTGGACAACTTGTTAAGAGCCACATGAAGTACAACCGATCAAACAAAGATGTCACAGCAGTTGCTTCCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

274

Amino Acids

28.54

Weight (kDa)

6.89

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	3 - 262	3.2e-99	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	128
AasI	GACNNNNNNGTC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	661
AccI	GTMKAC	2 cut(s)	64, 456
AciI	CCGC	3 cut(s)	354, 396, 816
AclI	AACGTT	1 cut(s)	174
AclWI	GGATC	4 cut(s)	278, 387, 400, 549
AcoI	YGGCCR	1 cut(s)	687
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	779
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	5 cut(s)	43, 170, 340, 424, 628
AhdI	GACNNNNNGTC	1 cut(s)	325
AjiI	CACGTC	1 cut(s)	550
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	6 cut(s)	367, 498, 524, 701, 724, 749
AluI	AGCT	6 cut(s)	367, 498, 524, 701, 724, 749
Alw21I	GWGCWC	2 cut(s)	412, 500
Alw26I	GTCTC	3 cut(s)	160, 312, 556
AlwI	GGATC	4 cut(s)	278, 387, 400, 549
AoxI	GGCC	2 cut(s)	277, 687
ApeKI	GCWGC	3 cut(s)	123, 257, 746
Asp700I	GAANNNNTTC	1 cut(s)	197
AsuC2I	CCSGG	2 cut(s)	94, 479
AsuHPI	GGTGA	3 cut(s)	109, 143, 502
BalI	TGGCCA	1 cut(s)	689
BamHI	GGATCC	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	500
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	412, 500
BbvI	GCAGC	3 cut(s)	135, 244, 758
BccI	CCATC	2 cut(s)	511, 527
BceAI	ACGGC	2 cut(s)	264, 437
BciT130I	CCWGG	1 cut(s)	666
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	2 cut(s)	94, 479
BcoDI	GTCTC	3 cut(s)	160, 312, 556
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	4 cut(s)	124, 258, 354, 747
BlsI	GCNGC	4 cut(s)	125, 259, 355, 748
Bme1390I	CCNGG	3 cut(s)	94, 479, 666
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmgBI	CACGTC	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	394, 598, 663
BmrFI	CCNGG	3 cut(s)	94, 479, 666
BmsI	GCATC	2 cut(s)	124, 617
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	94, 479
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	33, 280, 357
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	5 cut(s)	272, 394, 435, 472, 690
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	3 cut(s)	33, 280, 357
BseGI	GGATG	2 cut(s)	150, 217
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	3 cut(s)	255, 567, 626
BseNI	ACTGG	5 cut(s)	272, 394, 435, 472, 690
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	3 cut(s)	135, 244, 758
BsgI	GTGCAG	1 cut(s)	530
BshFI	GGCC	2 cut(s)	279, 689
BshNI	GGYRCC	1 cut(s)	661
BsiHKAI	GWGCWC	2 cut(s)	412, 500
BsiSI	CCGG	4 cut(s)	93, 228, 479, 717
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	3 cut(s)	160, 312, 556
BsmBI	CGTCTC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	279, 689
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	412, 500
Bsp143I	GATC	5 cut(s)	270, 309, 392, 541, 785
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	3 cut(s)	354, 396, 816
BspANI	GGCC	2 cut(s)	279, 689
BspCNI	CTCAG	3 cut(s)	254, 566, 625
BspLI	GGNNCC	3 cut(s)	394, 598, 663
BspMAI	CTGCAG	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	4 cut(s)	278, 387, 400, 549
BspT107I	GGYRCC	1 cut(s)	661
BspTNI	GGTCTC	1 cut(s)	160
BsrI	ACTGG	5 cut(s)	272, 394, 435, 472, 690
BssECI	CCNNGG	3 cut(s)	33, 280, 357
BssMI	GATC	5 cut(s)	270, 309, 392, 541, 785
BssT1I	CCWWGG	2 cut(s)	33, 357
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	3 cut(s)	76, 506, 586
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	241, 553, 612
BstDSI	CCRYGG	2 cut(s)	33, 280
BstF5I	GGATG	2 cut(s)	150, 217
BstKTI	GATC	5 cut(s)	273, 312, 395, 544, 788
BstMAI	GTCTC	3 cut(s)	160, 312, 556
BstMBI	GATC	5 cut(s)	270, 309, 392, 541, 785
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 746
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	2 cut(s)	376, 434
BstSCI	CCNGG	3 cut(s)	92, 477, 664
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	3 cut(s)	135, 244, 758
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	392, 541
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	2 cut(s)	392, 541
BsuRI	GGCC	2 cut(s)	279, 689
BtgI	CCRYGG	2 cut(s)	33, 280
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	2 cut(s)	150, 217
BtsIMutI	CAGTG	4 cut(s)	465, 502, 561, 697
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	778
CviQI	GTAC	1 cut(s)	778
DdeI	CTNAG	3 cut(s)	241, 553, 612
DpnI	GATC	5 cut(s)	272, 311, 394, 543, 787
DpnII	GATC	5 cut(s)	270, 309, 392, 541, 785
DrdI	GACNNNNNNGTC	1 cut(s)	212
DriI	GACNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	687
Eam1105I	GACNNNNNGTC	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	498
Eco130I	CCWWGG	2 cut(s)	33, 357
Eco24I	GRGCYC	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	498
Eco57I	CTGAAG	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	2 cut(s)	33, 357
EcoT38I	GRGCYC	1 cut(s)	500
ErhI	CCWWGG	2 cut(s)	33, 357
Esp3I	CGTCTC	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	2 cut(s)	64, 456
Fnu4HI	GCNGC	4 cut(s)	124, 258, 354, 747
FokI	GGATG	2 cut(s)	157, 224
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	4 cut(s)	124, 258, 354, 747
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	4 cut(s)	124, 258, 354, 747
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	279, 689
HapII	CCGG	4 cut(s)	93, 228, 479, 717
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	114, 382
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	4 cut(s)	93, 228, 479, 717
HphI	GGTGA	3 cut(s)	109, 143, 502
Hpy166II	GTNNAC	3 cut(s)	65, 265, 457
Hpy188I	TCNGA	2 cut(s)	72, 244
Hpy188III	TCNNGA	4 cut(s)	179, 190, 379, 473
Hpy8I	GTNNAC	3 cut(s)	65, 265, 457
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	269, 576, 637
HpyCH4III	ACNGT	3 cut(s)	76, 506, 586
HpyCH4IV	ACGT	3 cut(s)	174, 348, 549
HpyCH4V	TGCA	5 cut(s)	123, 428, 547, 608, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 746
HpyF3I	CTNAG	3 cut(s)	241, 553, 612
HpySE526I	ACGT	3 cut(s)	174, 348, 549
Ksp22I	TGATCA	1 cut(s)	309
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	270, 309, 392, 541, 785
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	3 cut(s)	135, 244, 758
LweI	GCATC	2 cut(s)	124, 617
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	3 cut(s)	174, 348, 549
MaeIII	GTNAC	4 cut(s)	230, 437, 556, 799
MalI	GATC	5 cut(s)	272, 311, 394, 543, 787
MboI	GATC	5 cut(s)	270, 309, 392, 541, 785
MboII	GAAGA	2 cut(s)	17, 109
MflI	RGATCY	2 cut(s)	392, 541
MhlI	GDGCHC	2 cut(s)	412, 500
MlsI	TGGCCA	1 cut(s)	689
MluNI	TGGCCA	1 cut(s)	689
MnlI	CCTC	6 cut(s)	197, 295, 568, 584, 587, 652
Mox20I	TGGCCA	1 cut(s)	689
MroXI	GAANNNNTTC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	4 cut(s)	264, 369, 762, 820
MslI	CAYNNNNRTG	2 cut(s)	32, 515
Msp20I	TGGCCA	1 cut(s)	689
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	4 cut(s)	93, 228, 479, 717
MspR9I	CCNGG	3 cut(s)	94, 479, 666
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	2 cut(s)	373, 746
NciI	CCSGG	2 cut(s)	94, 479
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	5 cut(s)	270, 309, 392, 541, 785
NlaIV	GGNNCC	3 cut(s)	394, 598, 663
NmuCI	GTSAC	2 cut(s)	556, 799
NspI	RCATGY	2 cut(s)	376, 434
PaqCI	CACCTGC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	114, 382
PkrI	GCNGC	4 cut(s)	125, 259, 355, 748
Psp124BI	GAGCTC	1 cut(s)	500
Psp1406I	AACGTT	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	3 cut(s)	394, 598, 663
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	392, 541
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	1 cut(s)	779
RsaNI	GTAC	1 cut(s)	778
RseI	CAYNNNNRTG	2 cut(s)	32, 515
SacI	GAGCTC	1 cut(s)	500
SaqAI	TTAA	4 cut(s)	264, 369, 762, 820
SatI	GCNGC	4 cut(s)	124, 258, 354, 747
Sau3AI	GATC	5 cut(s)	270, 309, 392, 541, 785
ScrFI	CCNGG	3 cut(s)	94, 479, 666
SduI	GDGCHC	2 cut(s)	412, 500
SfaNI	GCATC	2 cut(s)	124, 617
SfcI	CTRYAG	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	32, 515
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SsiI	CCGC	3 cut(s)	354, 396, 816
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	500
StyD4I	CCNGG	3 cut(s)	92, 477, 664
StyI	CCWWGG	2 cut(s)	33, 357
TaaI	ACNGT	3 cut(s)	76, 506, 586
TaiI	ACGT	3 cut(s)	177, 351, 552
TaqI	TCGA	2 cut(s)	180, 273
TatI	WGTACW	1 cut(s)	777
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	2 cut(s)	114, 382
Tru1I	TTAA	4 cut(s)	264, 369, 762, 820
Tru9I	TTAA	4 cut(s)	264, 369, 762, 820
TscAI	CASTG	4 cut(s)	472, 509, 561, 697
TseFI	GTSAC	2 cut(s)	556, 799
TseI	GCWGC	3 cut(s)	123, 257, 746
Tsp45I	GTSAC	2 cut(s)	556, 799
TspDTI	ATGAA	3 cut(s)	36, 161, 788
TspRI	CASTG	4 cut(s)	472, 509, 561, 697
XceI	RCATGY	2 cut(s)	376, 434
XmiI	GTMKAC	2 cut(s)	64, 456
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.