Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Reverse (-)

42521177 .. 42521890

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG254900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGATTCTGCTGCAGCACCGGCGATGCTATGGGGATGAACATGGTCTCCAAAGGTGTTCAAAATGTCCTCGACTTCCTTCAGAATGACTTCCCTGACATGGATGTCATTGGCATCTCTGGTAACTACTGCTCAGACAAGAAGCCTGCTGCTGTCAACTGGATCGAAGGCCGTGGCAAATCTGTGGTGTGTGAGGCTGTGATCAAGGGAGACATAGTAAGTAAGGTGTTGAAAACCAACGTGGCGGCCCTGGTGGAGCTTAACATGCTCAAGAACCTCACTGGTTCTGCCATGGCTGGTGCTCTTGGTGGGTTTAATGCTCATGCCAGTAACATTGTTTCAGCTGTCTACCTCGCAACTGGCCAAGACCCTGCTCAGAACATCGAGAGTTCTCACTGCATCACCATGATGGAAGCCATCAATGATGGAAAGGATCTTCACGTCTCAGTGACCATGCCTTCTATTGAGGTCGGCACTGTAGGAGGAGGTACCCAACTTGCATCGCAGTCTGCTTGTTTGAACTTGCTTGGAGTGAAGGGAGCTAACAGAGAAGCACCAGGATCAAACGCAAGGCAGTTGGCCAGTGTTGTAGCTGGTTCTGTTCTTGCTGGAGAGCTATCTCTCATGTCTGCCATTGCAGCTGGACAGCTCGTCAAGAGTCACATGAAGTACAACCGATCGAACAAAGATGTTACAACTGTTGCTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

237

Amino Acids

24.47

Weight (kDa)

6.41

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	1 - 226	3.1e-89	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc65I	GGTACC	1 cut(s)	488
AccB1I	GGYRCC	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	3 cut(s)	170, 441, 568
AcoI	YGGCCR	2 cut(s)	361, 579
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	490, 671
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	62, 232, 520
AhdI	GACNNNNNGTC	1 cut(s)	650
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	2 cut(s)	249, 556
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	7 cut(s)	259, 344, 542, 593, 616, 641, 649
AluI	AGCT	7 cut(s)	259, 344, 542, 593, 616, 641, 649
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	3 cut(s)	52, 204, 448
AlwI	GGATC	3 cut(s)	170, 441, 568
AoxI	GGCC	4 cut(s)	169, 246, 361, 579
ApeKI	GCWGC	4 cut(s)	12, 15, 149, 638
Asp700I	GAANNNNTTC	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	394
BalI	TGGCCA	2 cut(s)	363, 581
BanI	GGYRCC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	27, 136, 650
BccI	CCATC	3 cut(s)	403, 419, 425
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	2 cut(s)	251, 558
BclI	TGATCA	1 cut(s)	201
BcoDI	GTCTC	3 cut(s)	52, 204, 448
BfmI	CTRYAG	2 cut(s)	13, 477
BisI	GCNGC	5 cut(s)	13, 16, 150, 246, 639
BlsI	GCNGC	5 cut(s)	14, 17, 151, 247, 640
Bme1390I	CCNGG	2 cut(s)	251, 558
BmeRI	GACNNNNNGTC	1 cut(s)	650
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	2 cut(s)	251, 558
BmsI	GCATC	4 cut(s)	16, 123, 408, 509
BpmI	CTGGAG	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	3 cut(s)	172, 249, 291
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	5 cut(s)	164, 286, 327, 364, 582
Bse3DI	GCAATG	1 cut(s)	633
BseBI	CCWGG	2 cut(s)	251, 558
BseDI	CCNNGG	3 cut(s)	172, 249, 291
BseGI	GGATG	2 cut(s)	42, 109
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	3 cut(s)	147, 389, 459
BseNI	ACTGG	5 cut(s)	164, 286, 327, 364, 582
BseRI	GAGGAG	1 cut(s)	498
BseXI	GCAGC	3 cut(s)	27, 136, 650
Bsh1285I	CGRYCG	1 cut(s)	680
BshFI	GGCC	4 cut(s)	171, 248, 363, 581
BshNI	GGYRCC	1 cut(s)	488
BsiEI	CGRYCG	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	3 cut(s)	52, 204, 448
BsmBI	CGTCTC	1 cut(s)	448
BsnI	GGCC	4 cut(s)	171, 248, 363, 581
Bso31I	GGTCTC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	5 cut(s)	162, 201, 433, 560, 677
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	4 cut(s)	171, 248, 363, 581
BspCNI	CTCAG	3 cut(s)	146, 388, 458
BspLI	GGNNCC	1 cut(s)	490
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	3 cut(s)	170, 441, 568
BspT107I	GGYRCC	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	633
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	5 cut(s)	164, 286, 327, 364, 582
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	172, 249, 291
BssMI	GATC	5 cut(s)	162, 201, 433, 560, 677
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	251, 558
Bst4CI	ACNGT	2 cut(s)	478, 700
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	133, 375, 445
BstDSI	CCRYGG	2 cut(s)	172, 291
BstF5I	GGATG	2 cut(s)	42, 109
BstKTI	GATC	5 cut(s)	165, 204, 436, 563, 680
BstMAI	GTCTC	3 cut(s)	52, 204, 448
BstMBI	GATC	5 cut(s)	162, 201, 433, 560, 677
BstMCI	CGRYCG	1 cut(s)	680
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 265, 638
BstNI	CCWGG	2 cut(s)	251, 558
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	249, 556
BstSFI	CTRYAG	2 cut(s)	13, 477
BstV1I	GCAGC	3 cut(s)	27, 136, 650
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	4 cut(s)	171, 248, 363, 581
BtgI	CCRYGG	2 cut(s)	172, 291
BtgZI	GCGATG	2 cut(s)	39, 486
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	42, 109
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	5 cut(s)	279, 394, 453, 474, 589
Cac8I	GCNNGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	489, 670
CviAII	CATG	9 cut(s)	43, 100, 265, 292, 323, 406, 454, 625, 664
CviQI	GTAC	2 cut(s)	489, 670
DdeI	CTNAG	3 cut(s)	133, 375, 445
DpnI	GATC	5 cut(s)	164, 203, 435, 562, 679
DpnII	GATC	5 cut(s)	162, 201, 433, 560, 677
DrdI	GACNNNNNNGTC	1 cut(s)	104
DriI	GACNNNNNGTC	1 cut(s)	650
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	2 cut(s)	361, 579
Eam1105I	GACNNNNNGTC	1 cut(s)	650
Eco130I	CCWWGG	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	249, 556
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	448
FaeI	CATG	9 cut(s)	46, 103, 268, 295, 326, 409, 457, 628, 667
FatI	CATG	9 cut(s)	42, 99, 264, 291, 322, 405, 453, 624, 663
FbaI	TGATCA	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	5 cut(s)	13, 16, 150, 246, 639
FokI	GGATG	2 cut(s)	49, 116
Fsp4HI	GCNGC	5 cut(s)	13, 16, 150, 246, 639
GluI	GCNGC	5 cut(s)	13, 16, 150, 246, 639
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	4 cut(s)	171, 248, 363, 581
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	9 cut(s)	46, 103, 268, 295, 326, 409, 457, 628, 667
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	6, 658
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	157, 349
Hpy188I	TCNGA	3 cut(s)	84, 136, 378
Hpy188III	TCNNGA	3 cut(s)	271, 385, 655
Hpy8I	GTNNAC	2 cut(s)	157, 349
HpyAV	CCTTC	4 cut(s)	89, 161, 468, 529
HpyCH4III	ACNGT	2 cut(s)	478, 700
HpyCH4IV	ACGT	2 cut(s)	240, 441
HpyCH4V	TGCA	4 cut(s)	15, 399, 500, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 265, 638
HpyF3I	CTNAG	3 cut(s)	133, 375, 445
HpySE526I	ACGT	2 cut(s)	240, 441
Hsp92II	CATG	9 cut(s)	46, 103, 268, 295, 326, 409, 457, 628, 667
KpnI	GGTACC	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	162, 201, 433, 560, 677
LmnI	GCTCC	2 cut(s)	256, 539
Lsp1109I	GCAGC	3 cut(s)	27, 136, 650
LweI	GCATC	4 cut(s)	16, 123, 408, 509
MaeII	ACGT	2 cut(s)	240, 441
MaeIII	GTNAC	5 cut(s)	122, 329, 448, 659, 691
MalI	GATC	5 cut(s)	164, 203, 435, 562, 679
MboI	GATC	5 cut(s)	162, 201, 433, 560, 677
MboII	GAAGA	1 cut(s)	428
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	304
MlsI	TGGCCA	2 cut(s)	363, 581
MluNI	TGGCCA	2 cut(s)	363, 581
MlyI	GAGTC	1 cut(s)	667
MnlI	CCTC	7 cut(s)	80, 187, 287, 362, 460, 476, 479
Mox20I	TGGCCA	2 cut(s)	363, 581
MroXI	GAANNNNTTC	1 cut(s)	89
MscI	TGGCCA	2 cut(s)	363, 581
MseI	TTAA	3 cut(s)	261, 315, 712
MslI	CAYNNNNRTG	2 cut(s)	404, 407
Msp20I	TGGCCA	2 cut(s)	363, 581
MspA1I	CMGCKG	2 cut(s)	344, 641
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	251, 558
MvaI	CCWGG	2 cut(s)	251, 558
MwoI	GCNNNNNNNGC	3 cut(s)	21, 265, 638
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	5 cut(s)	162, 201, 433, 560, 677
NlaIII	CATG	9 cut(s)	46, 103, 268, 295, 326, 409, 457, 628, 667
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	448, 659
NspI	RCATGY	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	5 cut(s)	14, 17, 151, 247, 640
Ple19I	CGATCG	1 cut(s)	680
PleI	GAGTC	1 cut(s)	666
PpsI	GAGTC	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	249, 556
PspGI	CCWGG	2 cut(s)	249, 556
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	433
PvuI	CGATCG	1 cut(s)	680
PvuII	CAGCTG	2 cut(s)	344, 641
RsaI	GTAC	2 cut(s)	490, 671
RsaNI	GTAC	2 cut(s)	489, 670
RseI	CAYNNNNRTG	2 cut(s)	404, 407
SaqAI	TTAA	3 cut(s)	261, 315, 712
SatI	GCNGC	5 cut(s)	13, 16, 150, 246, 639
Sau3AI	GATC	5 cut(s)	162, 201, 433, 560, 677
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	2 cut(s)	251, 558
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	4 cut(s)	16, 123, 408, 509
SfcI	CTRYAG	2 cut(s)	13, 477
SgrAI	CRCCGGYG	1 cut(s)	20
SmiMI	CAYNNNNRTG	2 cut(s)	404, 407
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SsiI	CCGC	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	249, 556
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	478, 700
TaiI	ACGT	2 cut(s)	243, 444
TaqI	TCGA	4 cut(s)	72, 165, 384, 680
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	3 cut(s)	261, 315, 712
Tru9I	TTAA	3 cut(s)	261, 315, 712
TscAI	CASTG	5 cut(s)	286, 401, 453, 481, 589
TseFI	GTSAC	2 cut(s)	448, 659
TseI	GCWGC	4 cut(s)	12, 15, 149, 638
Tsp45I	GTSAC	2 cut(s)	448, 659
TspDTI	ATGAA	2 cut(s)	53, 680
TspRI	CASTG	5 cut(s)	286, 401, 453, 481, 589
XceI	RCATGY	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.