Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Forward (+)

43597644 .. 43598696

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGACCAGAGCTCCTGTTGTCAGATTCAACTCTGCTAAAAGAGCTGCTGAGTTGAAGTTCTTCATGGAAGACCCTGCCAATTATGAAACCATTTCCATGGTTTTCAACAAATCAAGCCGATTCGGTAGACTTCAGACAGTCAAGTGTGCCGTTGCTGGGAAGAACCTGTACATGAGATTCTGCTGCAGCACCGGTGATGCTATGGGGATGAACATGGTCTCTAAAGGTGTTCAAAACGTTCTTGATTTCCTCCAGAATGACTTCCCTGACATGGATGTCATTGGCATTTCTGGTAACTACTGCTCAGACAAAAAGCCTGCTGCTGTTAACTGGATTGAAGGTCGTGGCAAATCTGTGGTTTGTGAGGCCGTGATCAAGGGAGACATAGTGACAAAGGTGTTGAAAACCAATGTGGCGGCCTTGGTGGAGCTTAACATGCTCAAGAACCTTACTGGTTCTGCCATGGCTGGTGCTCTTGGTGGGTTCAATGCTCATGCCAGTAACATTGTTTCTGCAGTCTACCTTGCAACTGGCCAAGACCCTGCTCAGAACATCGAAAGTTCTCACTGCATCACCATGATGGAAGCCATCAATGATGGAAAGGATCTTCACGTCTCTGTAACCATGCCTTCTATTGAAGTTGGTACAGTAGGAGGTGGTACCCAACTTGCATCGCAGTCGGCTTGTTTAAACTTGCTTGGAGTGAAGGGTGCTAACAGAGAGGCACCAGGATCAAACGCAAGGCAGTTGGCTTGTGTTGTGGCTGGTTCTGTTCTTGCTGGAGAGCTATCTCTGATGTCAGCTATTGCAGCTGGTCAACTTGTTAAGAGCCACATGAAGTACAACCGATCGAGCAAAGATGTCACAACTGTTGCTTCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

294

Amino Acids

30.96

Weight (kDa)

8.74

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	1 - 283	1.9e-105	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
Acc65I	GGTACC	1 cut(s)	659
AccB1I	GGYRCC	2 cut(s)	659, 724
AccI	GTMKAC	2 cut(s)	127, 519
AciI	CCGC	1 cut(s)	416
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	2 cut(s)	612, 739
AcoI	YGGCCR	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	4 cut(s)	170, 646, 661, 842
AfiI	CCNNNNNNNGG	2 cut(s)	156, 271
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	8 cut(s)	28, 55, 106, 233, 338, 403, 487, 638
AjiI	CACGTC	1 cut(s)	613
AjnI	CCWGG	1 cut(s)	727
AluBI	AGCT	6 cut(s)	11, 44, 430, 787, 803, 812
AluI	AGCT	6 cut(s)	11, 44, 430, 787, 803, 812
Alw21I	GWGCWC	2 cut(s)	13, 475
Alw26I	GTCTC	3 cut(s)	223, 375, 619
AlwI	GGATC	2 cut(s)	612, 739
AoxI	GGCC	3 cut(s)	366, 417, 532
ApeKI	GCWGC	5 cut(s)	44, 183, 186, 320, 809
AsiGI	ACCGGT	1 cut(s)	191
Asp700I	GAANNNNTTC	2 cut(s)	59, 260
Asp718I	GGTACC	1 cut(s)	659
AsuHPI	GGTGA	2 cut(s)	206, 565
BalI	TGGCCA	1 cut(s)	534
BanI	GGYRCC	2 cut(s)	659, 724
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	13, 475
BbvI	GCAGC	5 cut(s)	31, 170, 198, 307, 821
BccI	CCATC	3 cut(s)	574, 590, 596
BceAI	ACGGC	2 cut(s)	134, 353
BcgI	CGANNNNNNTGC	2 cut(s)	660, 694
BciT130I	CCWGG	1 cut(s)	729
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	3 cut(s)	223, 375, 619
BfmI	CTRYAG	2 cut(s)	184, 513
BisI	GCNGC	6 cut(s)	45, 184, 187, 321, 417, 810
BlsI	GCNGC	6 cut(s)	46, 185, 188, 322, 418, 811
Bme1390I	CCNGG	1 cut(s)	729
BmgBI	CACGTC	1 cut(s)	613
BmiI	GGNNCC	2 cut(s)	661, 726
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	3 cut(s)	187, 579, 680
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	2 cut(s)	236, 801
BpuEI	CTTGAG	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	96, 420, 462
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	3 cut(s)	25, 372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 271
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	4 cut(s)	335, 457, 498, 535
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	3 cut(s)	96, 420, 462
BseGI	GGATG	2 cut(s)	213, 280
BseLI	CCNNNNNNNGG	2 cut(s)	156, 271
BseMII	CTCAG	3 cut(s)	39, 318, 560
BseNI	ACTGG	4 cut(s)	335, 457, 498, 535
BseXI	GCAGC	5 cut(s)	31, 170, 198, 307, 821
BseYI	CCCAGC	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	851
BshFI	GGCC	3 cut(s)	368, 419, 534
BshNI	GGYRCC	2 cut(s)	659, 724
BshTI	ACCGGT	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	851
BsiHKAI	GWGCWC	2 cut(s)	13, 475
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	156, 271
BsmAI	GTCTC	3 cut(s)	223, 375, 619
BsmBI	CGTCTC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	368, 419, 534
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	13, 475
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	372, 604, 731, 848
Bsp19I	CCATGG	2 cut(s)	96, 462
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	3 cut(s)	368, 419, 534
BspCNI	CTCAG	3 cut(s)	40, 317, 559
BspLI	GGNNCC	2 cut(s)	661, 726
BspMAI	CTGCAG	2 cut(s)	188, 517
BspPI	GGATC	2 cut(s)	612, 739
BspT107I	GGYRCC	2 cut(s)	659, 724
BspTNI	GGTCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	4 cut(s)	335, 457, 498, 535
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	96, 420, 462
BssMI	GATC	4 cut(s)	372, 604, 731, 848
BssT1I	CCWWGG	3 cut(s)	96, 420, 462
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	3 cut(s)	139, 649, 871
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	3 cut(s)	48, 304, 546
BstDSI	CCRYGG	2 cut(s)	96, 462
BstF5I	GGATG	2 cut(s)	213, 280
BstKTI	GATC	4 cut(s)	375, 607, 734, 851
BstMAI	GTCTC	3 cut(s)	223, 375, 619
BstMBI	GATC	4 cut(s)	372, 604, 731, 848
BstMCI	CGRYCG	1 cut(s)	851
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 436, 809
BstNI	CCWGG	1 cut(s)	729
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	727
BstSFI	CTRYAG	2 cut(s)	184, 513
BstV1I	GCAGC	5 cut(s)	31, 170, 198, 307, 821
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	604
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	604
BsuRI	GGCC	3 cut(s)	368, 419, 534
BtgI	CCRYGG	2 cut(s)	96, 462
BtgZI	GCGATG	1 cut(s)	657
BtrI	CACGTC	1 cut(s)	613
BtsCI	GGATG	2 cut(s)	213, 280
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	191
Csp6I	GTAC	4 cut(s)	169, 645, 660, 841
CspAI	ACCGGT	1 cut(s)	191
CviQI	GTAC	4 cut(s)	169, 645, 660, 841
DdeI	CTNAG	3 cut(s)	48, 304, 546
DpnI	GATC	4 cut(s)	374, 606, 733, 850
DpnII	GATC	4 cut(s)	372, 604, 731, 848
DraI	TTTAAA	1 cut(s)	690
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	532
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	3 cut(s)	96, 420, 462
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	727
EcoT14I	CCWWGG	3 cut(s)	96, 420, 462
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	3 cut(s)	96, 420, 462
Esp3I	CGTCTC	1 cut(s)	619
FbaI	TGATCA	1 cut(s)	372
FblI	GTMKAC	2 cut(s)	127, 519
Fnu4HI	GCNGC	6 cut(s)	45, 184, 187, 321, 417, 810
FokI	GGATG	2 cut(s)	220, 287
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	6 cut(s)	45, 184, 187, 321, 417, 810
GluI	GCNGC	6 cut(s)	45, 184, 187, 321, 417, 810
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	2 cut(s)	236, 801
HaeIII	GGCC	3 cut(s)	368, 419, 534
HapII	CCGG	1 cut(s)	192
HincII	GTYRAC	2 cut(s)	328, 818
HindII	GTYRAC	2 cut(s)	328, 818
HinfI	GANTC	3 cut(s)	24, 120, 177
HpaI	GTTAAC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	2 cut(s)	206, 565
Hpy166II	GTNNAC	4 cut(s)	128, 328, 520, 818
Hpy188I	TCNGA	5 cut(s)	23, 135, 307, 549, 795
Hpy188III	TCNNGA	3 cut(s)	242, 253, 442
Hpy8I	GTNNAC	4 cut(s)	128, 328, 520, 818
HpyAV	CCTTC	3 cut(s)	332, 639, 700
HpyCH4III	ACNGT	3 cut(s)	139, 649, 871
HpyCH4IV	ACGT	2 cut(s)	237, 612
HpyCH4V	TGCA	6 cut(s)	186, 515, 527, 570, 671, 809
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 436, 809
HpyF3I	CTNAG	3 cut(s)	48, 304, 546
HpySE526I	ACGT	2 cut(s)	237, 612
KpnI	GGTACC	1 cut(s)	663
Ksp22I	TGATCA	1 cut(s)	372
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	372, 604, 731, 848
LmnI	GCTCC	2 cut(s)	16, 427
Lsp1109I	GCAGC	5 cut(s)	31, 170, 198, 307, 821
LweI	GCATC	3 cut(s)	187, 579, 680
MaeII	ACGT	2 cut(s)	237, 612
MaeIII	GTNAC	5 cut(s)	293, 388, 500, 619, 862
MalI	GATC	4 cut(s)	374, 606, 733, 850
MboI	GATC	4 cut(s)	372, 604, 731, 848
MboII	GAAGA	4 cut(s)	52, 80, 172, 599
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	2 cut(s)	13, 475
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	1 cut(s)	79
MluNI	TGGCCA	1 cut(s)	534
MnlI	CCTC	4 cut(s)	260, 358, 647, 715
Mox20I	TGGCCA	1 cut(s)	534
MroXI	GAANNNNTTC	2 cut(s)	59, 260
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	5 cut(s)	327, 432, 689, 825, 883
MslI	CAYNNNNRTG	3 cut(s)	95, 575, 578
Msp20I	TGGCCA	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	729
MssI	GTTTAAAC	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	3 cut(s)	41, 436, 809
NcoI	CCATGG	2 cut(s)	96, 462
NdeII	GATC	4 cut(s)	372, 604, 731, 848
NlaIV	GGNNCC	2 cut(s)	661, 726
NmuCI	GTSAC	2 cut(s)	388, 862
NspI	RCATGY	1 cut(s)	439
PdmI	GAANNNNTTC	2 cut(s)	59, 260
PfeI	GAWTC	3 cut(s)	24, 120, 177
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	6 cut(s)	46, 185, 188, 322, 418, 811
Ple19I	CGATCG	1 cut(s)	851
PmeI	GTTTAAAC	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	727
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	2 cut(s)	661, 726
PstI	CTGCAG	2 cut(s)	188, 517
PsuI	RGATCY	1 cut(s)	604
PvuI	CGATCG	1 cut(s)	851
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	4 cut(s)	170, 646, 661, 842
RsaNI	GTAC	4 cut(s)	169, 645, 660, 841
RseI	CAYNNNNRTG	3 cut(s)	95, 575, 578
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	5 cut(s)	327, 432, 689, 825, 883
SatI	GCNGC	6 cut(s)	45, 184, 187, 321, 417, 810
Sau3AI	GATC	4 cut(s)	372, 604, 731, 848
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	2 cut(s)	13, 475
SfaNI	GCATC	3 cut(s)	187, 579, 680
SfcI	CTRYAG	2 cut(s)	184, 513
SgrAI	CRCCGGYG	1 cut(s)	191
SmiMI	CAYNNNNRTG	3 cut(s)	95, 575, 578
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	416
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	3 cut(s)	96, 420, 462
TaaI	ACNGT	3 cut(s)	139, 649, 871
TaiI	ACGT	2 cut(s)	240, 615
TaqI	TCGA	2 cut(s)	555, 851
TasI	AATT	1 cut(s)	79
TatI	WGTACW	2 cut(s)	168, 840
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	3 cut(s)	24, 120, 177
Tru1I	TTAA	5 cut(s)	327, 432, 689, 825, 883
Tru9I	TTAA	5 cut(s)	327, 432, 689, 825, 883
TscAI	CASTG	1 cut(s)	572
TseFI	GTSAC	2 cut(s)	388, 862
TseI	GCWGC	5 cut(s)	44, 183, 186, 320, 809
Tsp45I	GTSAC	2 cut(s)	388, 862
TspDTI	ATGAA	4 cut(s)	52, 99, 224, 851
TspRI	CASTG	1 cut(s)	572
XceI	RCATGY	1 cut(s)	439
XmiI	GTMKAC	2 cut(s)	127, 519
XmnI	GAANNNNTTC	2 cut(s)	59, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.