Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Reverse (-)

43326786 .. 43329577

Gene Structure 2792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG246600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGGAGCACGCTACCGGCAAGGGAGGCAACAAGCCCGTGAAAACGAAAGTCAAGTTCGTCGACGATGAGGAGACCAAAGTCGTCAAGGCCTCCGACGCCTTGCCTCTGCCGCTCTACCTCACCAACGCCGTCTTCTTCACTCTCTTTTTCTCCGTCGCCTACTTCCTGCTCACCAGCTGGCGTGAGAAGATCCGTTCCAACACGCCTCTCCACATCCTCAATCTCTCTGAGCTCGTCTCCATTCTGGTCTTGGTTGCCTCCTTCGTCTACCTCCTCGCCTTCTTCGGCATCGATTTCGTTCAGACCCCAGCTCTCAAGGACGAAGAAGAAGAAGATGTTCGCGTGGTCCCTTGCGGCCAAGCCCTCGAGTGCCCGGTTCCCCAGATTGCCCCTAAAGTTGCACCGAAGGTGTTTGATGAAAGGCCGGTGACCGAGACACCCCCACCGACTGCAGAAGATGAGGAGATTATCAAGGCTGTGGTTGCCGGAACCATTCCTTCATATTCACTCGAGTCAAAGCTCGGCGATTGCAAGAGGGCTGCTGCTATTAGGCGGGAGGCTTTGCAGAGAGTTACAGGCAAGTCTCTTGAGGGTTTGCCATTGGAGGGTTTCGATTACGAGTCCATTTTGGGTCAATGCTGTGAAATGCCAATTGGGTATGTCACCATTCCTGTTGGGATTGCTGGGCCTCTTCTGCTTGATGGAAGAGAATTCTCAGTCCCCATGGCCACCACTGAAGGTTGCTTGGTGGCTAGTACCAACCGTGGTTGCAAAGCTATCAACTTGTCCGGTGGGGCTTCAAGTGTGCTTTTGAAGGATGGAATGACCAGAGCACCTGTTGTTAGATTCAACTCTGCTAAAAGGGCTGCTGAGTTGAAGTTCTTCATGGAAGATCCCGACAATTACGAAACCATCTCTATGGTTTTCAACAAATCAAGCAGATTTGGTAGACTTCAGACCGTCAAGTGTGCTGTTGCTGGGAAGAACCTGTACATGAGATTCTGCTGCAGCACTGGTGATGCTATGGGGATGAACATGGTCTCTAAAGGTGTTCAAAACGTTCTCGATTTCCTCCAGAATGACTTCCCTGACATGGATGTCATTGGCATTTCTGGTAACTACTGCTCAGACAAAAAGCCTGCTGCTGTTAACTGGATTGAAGGCCGTGGCAAATCTGTGGTTTGCGAGGCTGTTATCAAGGGAGACATAGTGACGAAGGTGTTGAAGACCAATGTGGCGGCCTTGGTGGAGCTTAACATGCTCAAGAACCTAACTGGTTCTGCAATTGCTGGTGCCCTTGGTGGTTTCAATGCACATGCCAGTAACATTGTTTCAGCAGTCTACCTAGCCACTGGTCAAGATCCAGCTCAGAACATCGAGAGTTCTCACTGTATCACCATGATGGAAGCCATCAATGATGCCAAGGATCTTCACGTCTCAGTGACCATGCCTTCTATTGAGGTCGGCACAGTAGGAGGAGGTACCCAACTGGCATCGCAGTCGGCTTGCTTGAATTTGCTCGGAGTGAAGGGTGCCAACAGAGAGGCACCAGGATCAAACGCAAGGCAGTTAGCAAGTGTTGTAGCAGGTGCTGTTCTTGCTGGAGAGCTGTCTCTCATGTCTGCCATTGCTGCTGGACAACTTGTTAAGAGCCACATGAAGTACAACAGATCTAGCAAGGATGTCACTGCTGTTGCTGCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

568

Amino Acids

60.48

Weight (kDa)

6.01

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	181 - 557	5.5e-146	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1577
AasI	GACNNNNNNGTC	1 cut(s)	1097
Acc36I	ACCTGC	1 cut(s)	1577
Acc65I	GGTACC	1 cut(s)	1481
AccB1I	GGYRCC	4 cut(s)	1292, 1481, 1532, 1546
AccBSI	CCGCTC	1 cut(s)	112
AccI	GTMKAC	4 cut(s)	60, 267, 949, 1341
AccII	CGCG	1 cut(s)	342
AciI	CCGC	5 cut(s)	110, 354, 553, 1238, 1701
AclI	AACGTT	1 cut(s)	1059
AclWI	GGATC	5 cut(s)	184, 887, 1355, 1434, 1561
AcoI	YGGCCR	2 cut(s)	355, 726
AcsI	RAATTY	2 cut(s)	710, 1513
AcuI	CTGAAG	2 cut(s)	756, 938
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	4 cut(s)	757, 992, 1483, 1664
AfiI	CCNNNNNNNGG	2 cut(s)	605, 1093
AjiI	CACGTC	1 cut(s)	1435
AjnI	CCWGG	1 cut(s)	1549
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 636, 668
AluBI	AGCT	8 cut(s)	177, 232, 311, 520, 776, 1252, 1367, 1609
AluI	AGCT	8 cut(s)	177, 232, 311, 520, 776, 1252, 1367, 1609
Alw21I	GWGCWC	3 cut(s)	9, 234, 835
Alw26I	GTCTC	8 cut(s)	65, 241, 428, 588, 1045, 1197, 1441, 1617
AlwI	GGATC	5 cut(s)	184, 887, 1355, 1434, 1561
AlwNI	CAGNNNCTG	1 cut(s)	1592
Ama87I	CYCGRG	2 cut(s)	365, 509
AoxI	GGCC	7 cut(s)	87, 355, 422, 686, 726, 1162, 1239
ApeKI	GCWGC	8 cut(s)	539, 542, 866, 1005, 1008, 1142, 1631, 1697
ApoI	RAATTY	2 cut(s)	710, 1513
Asp700I	GAANNNNTTC	3 cut(s)	336, 881, 1082
Asp718I	GGTACC	1 cut(s)	1481
AspS9I	GGNCC	2 cut(s)	346, 686
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	6 cut(s)	112, 163, 439, 655, 1028, 1387
AvaI	CYCGRG	2 cut(s)	365, 509
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	2 cut(s)	374, 1297
BalI	TGGCCA	1 cut(s)	728
BanI	GGYRCC	4 cut(s)	1292, 1481, 1532, 1546
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	974, 1006
BbsI	GAAGAC	2 cut(s)	124, 1232
Bbv12I	GWGCWC	3 cut(s)	9, 234, 835
BbvI	GCAGC	8 cut(s)	526, 529, 853, 992, 1020, 1129, 1618, 1684
BccI	CCATC	5 cut(s)	695, 812, 920, 1396, 1418
BceAI	ACGGC	2 cut(s)	113, 1149
BcgI	CGANNNNNNTGC	4 cut(s)	277, 311, 1482, 1516
BciT130I	CCWGG	1 cut(s)	1551
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	8 cut(s)	65, 241, 428, 588, 1045, 1197, 1441, 1617
BfaI	CTAG	3 cut(s)	753, 1346, 1674
BfmI	CTRYAG	2 cut(s)	450, 1006
BfuAI	ACCTGC	1 cut(s)	1577
BglII	AGATCT	1 cut(s)	1670
Bme1390I	CCNGG	2 cut(s)	374, 1551
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	2 cut(s)	365, 509
BmgBI	CACGTC	1 cut(s)	1435
BmgT120I	GGNCC	2 cut(s)	346, 686
BmiI	GGNNCC	7 cut(s)	348, 378, 490, 1294, 1483, 1534, 1548
BmrFI	CCNGG	2 cut(s)	374, 1551
BmsI	GCATC	4 cut(s)	297, 1009, 1408, 1502
BoxI	GACNNNNGTC	1 cut(s)	77
BpiI	GAAGAC	2 cut(s)	124, 1232
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	2 cut(s)	1058, 1623
BpuEI	CTTGAG	3 cut(s)	299, 608, 1247
BpuMI	CCSGG	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	2 cut(s)	65, 1045
BsaJI	CCNNGG	6 cut(s)	723, 763, 1165, 1242, 1297, 1422
BsaWI	WCCGGW	1 cut(s)	788
BsaXI	ACNNNNNCTCC	2 cut(s)	1194, 1224
Bsc4I	CCNNNNNNNGG	2 cut(s)	605, 1093
Bse118I	RCCGGY	2 cut(s)	14, 424
Bse1I	ACTGG	6 cut(s)	1018, 1157, 1279, 1320, 1357, 1494
Bse3DI	GCAATG	1 cut(s)	1626
BseBI	CCWGG	1 cut(s)	1551
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	6 cut(s)	723, 763, 1165, 1242, 1297, 1422
BseGI	GGATG	5 cut(s)	213, 823, 1035, 1102, 1687
BseLI	CCNNNNNNNGG	2 cut(s)	605, 1093
BseMI	GCAATG	1 cut(s)	1626
BseMII	CTCAG	6 cut(s)	219, 729, 861, 1140, 1382, 1452
BseNI	ACTGG	6 cut(s)	1018, 1157, 1279, 1320, 1357, 1494
BseRI	GAGGAG	4 cut(s)	83, 263, 476, 1491
BseSI	GKGCMC	2 cut(s)	374, 1297
BseXI	GCAGC	8 cut(s)	526, 529, 853, 992, 1020, 1129, 1618, 1684
BseYI	CCCAGC	3 cut(s)	307, 683, 977
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	7 cut(s)	89, 357, 424, 688, 728, 1164, 1241
BshNI	GGYRCC	4 cut(s)	1292, 1481, 1532, 1546
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	3 cut(s)	9, 234, 835
BsiHKCI	CYCGRG	2 cut(s)	365, 509
BsiSI	CCGG	5 cut(s)	15, 374, 425, 486, 789
BslFI	GGGAC	2 cut(s)	332, 704
BslI	CCNNNNNNNGG	2 cut(s)	605, 1093
BsmAI	GTCTC	8 cut(s)	65, 241, 428, 588, 1045, 1197, 1441, 1617
BsmBI	CGTCTC	2 cut(s)	241, 1441
BsmFI	GGGAC	2 cut(s)	332, 704
BsnI	GGCC	7 cut(s)	89, 357, 424, 688, 728, 1164, 1241
Bso31I	GGTCTC	2 cut(s)	65, 1045
BsoBI	CYCGRG	2 cut(s)	365, 509
Bsp1286I	GDGCHC	5 cut(s)	9, 234, 374, 835, 1297
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	6 cut(s)	189, 892, 1360, 1426, 1553, 1670
Bsp19I	CCATGG	1 cut(s)	723
BspACI	CCGC	5 cut(s)	110, 354, 553, 1238, 1701
BspANI	GGCC	7 cut(s)	89, 357, 424, 688, 728, 1164, 1241
BspCNI	CTCAG	6 cut(s)	220, 728, 862, 1139, 1381, 1451
BspDI	ATCGAT	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	7 cut(s)	348, 378, 490, 1294, 1483, 1534, 1548
BspMAI	CTGCAG	2 cut(s)	454, 1010
BspMI	ACCTGC	1 cut(s)	1577
BspPI	GGATC	5 cut(s)	184, 887, 1355, 1434, 1561
BspT107I	GGYRCC	4 cut(s)	1292, 1481, 1532, 1546
BspTNI	GGTCTC	2 cut(s)	65, 1045
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	1626
BsrFI	RCCGGY	2 cut(s)	14, 424
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	6 cut(s)	1018, 1157, 1279, 1320, 1357, 1494
BssAI	RCCGGY	2 cut(s)	14, 424
BssECI	CCNNGG	6 cut(s)	723, 763, 1165, 1242, 1297, 1422
BssMI	GATC	6 cut(s)	189, 892, 1360, 1426, 1553, 1670
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	4 cut(s)	723, 1242, 1297, 1422
Bst2UI	CCWGG	1 cut(s)	1551
Bst4CI	ACNGT	4 cut(s)	764, 961, 1391, 1471
Bst6I	CTCTTC	2 cut(s)	696, 700
BstACI	GRCGYC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	990
BstC8I	GCNNGC	4 cut(s)	9, 179, 1140, 1507
BstDEI	CTNAG	6 cut(s)	228, 715, 870, 1126, 1368, 1438
BstDSI	CCRYGG	3 cut(s)	723, 763, 1165
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	5 cut(s)	213, 823, 1035, 1102, 1687
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	6 cut(s)	192, 895, 1363, 1429, 1556, 1673
BstMAI	GTCTC	8 cut(s)	65, 241, 428, 588, 1045, 1197, 1441, 1617
BstMBI	GATC	6 cut(s)	189, 892, 1360, 1426, 1553, 1670
BstNI	CCWGG	1 cut(s)	1551
BstNSI	RCATGY	2 cut(s)	1261, 1319
BstPAI	GACNNNNGTC	1 cut(s)	77
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	372, 1549
BstSFI	CTRYAG	2 cut(s)	450, 1006
BstSLI	GKGCMC	2 cut(s)	374, 1297
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	8 cut(s)	526, 529, 853, 992, 1020, 1129, 1618, 1684
BstV2I	GAAGAC	2 cut(s)	124, 1232
BstX2I	RGATCY	5 cut(s)	189, 892, 1360, 1426, 1670
BstXI	CCANNNNNNTGG	1 cut(s)	919
BstYI	RGATCY	5 cut(s)	189, 892, 1360, 1426, 1670
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	7 cut(s)	89, 357, 424, 688, 728, 1164, 1241
BsuTUI	ATCGAT	1 cut(s)	291
BtgI	CCRYGG	3 cut(s)	723, 763, 1165
BtgZI	GCGATG	1 cut(s)	1479
BtrI	CACGTC	1 cut(s)	1435
BtsCI	GGATG	5 cut(s)	213, 823, 1035, 1102, 1687
BtsI	GCAGTG	1 cut(s)	1686
BtsIMutI	CAGTG	6 cut(s)	732, 1011, 1350, 1387, 1446, 1686
BveI	ACCTGC	1 cut(s)	1577
Cac8I	GCNNGC	4 cut(s)	9, 179, 1140, 1507
CaiI	CAGNNNCTG	1 cut(s)	1592
Cfr10I	RCCGGY	2 cut(s)	14, 424
Cfr13I	GGNCC	2 cut(s)	346, 686
ClaI	ATCGAT	1 cut(s)	291
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	4 cut(s)	756, 991, 1482, 1663
CviQI	GTAC	4 cut(s)	756, 991, 1482, 1663
DdeI	CTNAG	6 cut(s)	228, 715, 870, 1126, 1368, 1438
DpnI	GATC	6 cut(s)	191, 894, 1362, 1428, 1555, 1672
DpnII	GATC	6 cut(s)	189, 892, 1360, 1426, 1553, 1670
DrdI	GACNNNNNNGTC	1 cut(s)	1097
DseDI	GACNNNNNNGTC	1 cut(s)	1097
EaeI	YGGCCR	2 cut(s)	355, 726
Eam1104I	CTCTTC	2 cut(s)	696, 700
EarI	CTCTTC	2 cut(s)	696, 700
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	4 cut(s)	723, 1242, 1297, 1422
Eco147I	AGGCCT	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	2 cut(s)	65, 1045
Eco47I	GGWCC	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	756, 938
Eco88I	CYCGRG	2 cut(s)	365, 509
Eco91I	GGTNACC	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	1549
EcoT14I	CCWWGG	4 cut(s)	723, 1242, 1297, 1422
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	4 cut(s)	723, 1242, 1297, 1422
Esp3I	CGTCTC	2 cut(s)	241, 1441
FaqI	GGGAC	2 cut(s)	332, 704
FauI	CCCGC	1 cut(s)	546
FblI	GTMKAC	4 cut(s)	60, 267, 949, 1341
FokI	GGATG	5 cut(s)	200, 830, 1042, 1109, 1694
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	3 cut(s)	753, 1346, 1674
GsaI	CCCAGC	3 cut(s)	311, 687, 981
GsuI	CTGGAG	2 cut(s)	1058, 1623
HaeIII	GGCC	7 cut(s)	89, 357, 424, 688, 728, 1164, 1241
HapII	CCGG	5 cut(s)	15, 374, 425, 486, 789
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	96
HincII	GTYRAC	2 cut(s)	61, 1150
HindII	GTYRAC	2 cut(s)	61, 1150
HinfI	GANTC	4 cut(s)	512, 620, 846, 999
HpaI	GTTAAC	1 cut(s)	1150
HpaII	CCGG	5 cut(s)	15, 374, 425, 486, 789
HphI	GGTGA	6 cut(s)	112, 163, 439, 655, 1028, 1387
Hpy166II	GTNNAC	5 cut(s)	61, 268, 950, 1150, 1342
Hpy188I	TCNGA	7 cut(s)	94, 229, 303, 957, 1129, 1371, 1523
Hpy188III	TCNNGA	7 cut(s)	587, 896, 1064, 1075, 1264, 1358, 1378
Hpy8I	GTNNAC	5 cut(s)	61, 268, 950, 1150, 1342
Hpy99I	CGWCG	4 cut(s)	62, 65, 98, 158
HpyCH4III	ACNGT	4 cut(s)	764, 961, 1391, 1471
HpyCH4IV	ACGT	2 cut(s)	1059, 1434
HpyCH4V	TGCA	8 cut(s)	401, 452, 531, 565, 771, 1008, 1283, 1313
HpyF3I	CTNAG	6 cut(s)	228, 715, 870, 1126, 1368, 1438
HpySE526I	ACGT	2 cut(s)	1059, 1434
Hsp92I	GRCGYC	1 cut(s)	96
KpnI	GGTACC	1 cut(s)	1485
KspAI	GTTAAC	1 cut(s)	1150
Kzo9I	GATC	6 cut(s)	189, 892, 1360, 1426, 1553, 1670
LmnI	GCTCC	2 cut(s)	4, 1249
Lsp1109I	GCAGC	8 cut(s)	526, 529, 853, 992, 1020, 1129, 1618, 1684
LweI	GCATC	4 cut(s)	297, 1009, 1408, 1502
MaeI	CTAG	3 cut(s)	753, 1346, 1674
MaeII	ACGT	2 cut(s)	1059, 1434
MaeIII	GTNAC	8 cut(s)	427, 571, 661, 1115, 1210, 1322, 1441, 1684
MalI	GATC	6 cut(s)	191, 894, 1362, 1428, 1555, 1672
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	6 cut(s)	189, 892, 1360, 1426, 1553, 1670
MfeI	CAATTG	2 cut(s)	651, 1284
MflI	RGATCY	5 cut(s)	189, 892, 1360, 1426, 1670
MhlI	GDGCHC	5 cut(s)	9, 234, 374, 835, 1297
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	5 cut(s)	651, 710, 901, 1284, 1513
MluNI	TGGCCA	1 cut(s)	728
MlyI	GAGTC	2 cut(s)	521, 629
MmeI	TCCRAC	2 cut(s)	117, 222
Mox20I	TGGCCA	1 cut(s)	728
MroXI	GAANNNNTTC	3 cut(s)	336, 881, 1082
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	3 cut(s)	1149, 1254, 1647
MslI	CAYNNNNRTG	2 cut(s)	917, 1400
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	5 cut(s)	15, 374, 425, 486, 789
MspR9I	CCNGG	2 cut(s)	374, 1551
MunI	CAATTG	2 cut(s)	651, 1284
MvaI	CCWGG	1 cut(s)	1551
MvnI	CGCG	1 cut(s)	342
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	723
NdeII	GATC	6 cut(s)	189, 892, 1360, 1426, 1553, 1670
NlaIV	GGNNCC	7 cut(s)	348, 378, 490, 1294, 1483, 1534, 1548
NmeAIII	GCCGAG	1 cut(s)	501
NmuCI	GTSAC	5 cut(s)	427, 661, 1210, 1441, 1684
NspI	RCATGY	2 cut(s)	1261, 1319
PaeR7I	CTCGAG	2 cut(s)	365, 509
PaqCI	CACCTGC	1 cut(s)	1577
PceI	AGGCCT	1 cut(s)	89
PdmI	GAANNNNTTC	3 cut(s)	336, 881, 1082
PfeI	GAWTC	2 cut(s)	846, 999
PleI	GAGTC	2 cut(s)	520, 628
PpsI	GAGTC	2 cut(s)	520, 628
PshAI	GACNNNNGTC	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	1059
Psp6I	CCWGG	1 cut(s)	1549
PspEI	GGTNACC	1 cut(s)	427
PspFI	CCCAGC	3 cut(s)	307, 683, 977
PspGI	CCWGG	1 cut(s)	1549
PspN4I	GGNNCC	7 cut(s)	348, 378, 490, 1294, 1483, 1534, 1548
PspPI	GGNCC	2 cut(s)	346, 686
PspXI	VCTCGAGB	2 cut(s)	365, 509
PstI	CTGCAG	2 cut(s)	454, 1010
PstNI	CAGNNNCTG	1 cut(s)	1592
PsuI	RGATCY	5 cut(s)	189, 892, 1360, 1426, 1670
PvuII	CAGCTG	1 cut(s)	177
RsaI	GTAC	4 cut(s)	757, 992, 1483, 1664
RsaNI	GTAC	4 cut(s)	756, 991, 1482, 1663
RseI	CAYNNNNRTG	2 cut(s)	917, 1400
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	1149, 1254, 1647
Sau3AI	GATC	6 cut(s)	189, 892, 1360, 1426, 1553, 1670
Sau96I	GGNCC	2 cut(s)	346, 686
SchI	GAGTC	2 cut(s)	521, 629
ScrFI	CCNGG	2 cut(s)	374, 1551
SduI	GDGCHC	5 cut(s)	9, 234, 374, 835, 1297
SfaNI	GCATC	4 cut(s)	297, 1009, 1408, 1502
SfcI	CTRYAG	2 cut(s)	450, 1006
Sfr274I	CTCGAG	2 cut(s)	365, 509
SgrDI	CGTCGACG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	346
SlaI	CTCGAG	2 cut(s)	365, 509
SmiMI	CAYNNNNRTG	2 cut(s)	917, 1400
SmlI	CTYRAG	5 cut(s)	314, 365, 509, 587, 1262
SmoI	CTYRAG	5 cut(s)	314, 365, 509, 587, 1262
Sse9I	AATT	5 cut(s)	651, 710, 901, 1284, 1513
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	5 cut(s)	110, 354, 553, 1238, 1701
SspMI	CTAG	3 cut(s)	753, 1346, 1674
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	372, 1549
StyI	CCWWGG	4 cut(s)	723, 1242, 1297, 1422
TaaI	ACNGT	4 cut(s)	764, 961, 1391, 1471
TaiI	ACGT	2 cut(s)	1062, 1437
TaqI	TCGA	7 cut(s)	60, 291, 366, 510, 612, 1065, 1377
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	5 cut(s)	651, 710, 901, 1284, 1513
TatI	WGTACW	2 cut(s)	990, 1662
TauI	GCSGC	4 cut(s)	112, 357, 1241, 1703
TfiI	GAWTC	2 cut(s)	846, 999
Tru1I	TTAA	3 cut(s)	1149, 1254, 1647
Tru9I	TTAA	3 cut(s)	1149, 1254, 1647
TscAI	CASTG	6 cut(s)	739, 1018, 1357, 1394, 1446, 1693
TseFI	GTSAC	5 cut(s)	427, 661, 1210, 1441, 1684
TseI	GCWGC	8 cut(s)	539, 542, 866, 1005, 1008, 1142, 1631, 1697
Tsp45I	GTSAC	5 cut(s)	427, 661, 1210, 1441, 1684
TspDTI	ATGAA	5 cut(s)	432, 489, 874, 1046, 1673
TspGWI	ACGGA	2 cut(s)	142, 182
TspRI	CASTG	6 cut(s)	739, 1018, 1357, 1394, 1446, 1693
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	710, 1513
XceI	RCATGY	2 cut(s)	1261, 1319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XhoI	CTCGAG	2 cut(s)	365, 509
XmiI	GTMKAC	4 cut(s)	60, 267, 949, 1341
XmnI	GAANNNNTTC	3 cut(s)	336, 881, 1082
XspI	CTAG	3 cut(s)	753, 1346, 1674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.