Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Reverse (-)

42514127 .. 42515866

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG254800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGAGCACGCTACCGGCAAGAGAGGCAACAAGCCAGTGAAAACGAAAGTCAAGTTCGTCGACGATGAGGAGACCAAAGTCGTCAAGGCCTCCGACGCCTTGCCTCTGCCGCTCTACCTCACCAACGCCGTCTTCTTCACTCTCTTCTTCTCCGTCGCCTACTTCCTGCTCACCAGCTGGCGTGAGAAGATCCGTTCCAACACGCCTCTCCACATCCTCAATCTCTCTGAGCTCGTCTCCATTCTGGTCTTGGTTGCGTCCTTCGTCTACCTCCTCGCCTTCTTCGGCATCGATTTCGTTCAGACTCCAGCTCTCAAGGAAGACGACGACGAAGAAGAAGAAGAAGACATTATTGTCCAGGAGGATGCCCGCGTGGTCCCTCGCGGCCAAGCCCTCGAGTGCCCGGCGGTTCCCCAGATTGCCCCTAAAGTTGCACAGAAGGATGGAATGACCAGAGCACCTGTTGTCAGATTCAACTCTGCTAAAAGGGCTGCTGAGTTGAAGTTCTTCATGGAAGACCCCGACAATTACGAAACCATCTCTATGGTTTTCAACAAATCAAGCAGATTTGGTAGACTTCAGACCGTCAAGTGTGCTGTTGCTGGGAAGAACCTGTACATGAGATTCTGCTGCAGCACTGGTGATGCTATGGGGATGAACATGGTCTCTAAAGGTGTTCAAAACGTTCTCGATTTCCTCCAGAATGACTTCCCTGACATGGATGTCATTGGCATTTCTGGTAACTACTGCTCAGACAAAAAGCCTGCTGCTGTCAACTGGATTGAAGGCCGTGGCAAATCTGTGGTTTGCGAGGCTGTTATCAAGGGAGACATAGTGACGAAGGTGTTGAAAACCAATGTGGCGGCCTTGGTGGAGCTTAACATGCTCAAGAACCTAACTGGTTCTGCAATTGCTGGTGCCCTTGGTGGTTTCAATGCACATGCCAGTAACATTGTTTCAGCAGTCTACCTAGCCACTGGTCAAGATCCAGCTCAGAACATCGAGAGTTCTCACTGCATCACCATGATGGAAGCCATCAATGATGCCAAGGATCTTCACGTCTCAGTGACCATGCCTTCTATTGAGGTCGGCACAGTAGGAGGAGGTACCCAACTGGCATCGCAGTCGGCTTGCTTGAATTTGCTCGGAGTGAAGGGTGCCAACAGAGAGGCACCAGGATCAAACGCAAGGCAGTTAGCAAGTGTTGTAGCAGGTGCTGTTCTTGCTGGAGAGCTGTCTCTCATGTCTGCCATTGCTGCTGGACAACTTGTTAAGAGCCACATGAAGTACAACAGATCTAGCAAGGATGTCACTGCTGTTGCTGCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

443

Amino Acids

47.58

Weight (kDa)

6.14

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	145 - 432	2.1e-106	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1202
AasI	GACNNNNNNGTC	2 cut(s)	353, 722
Acc36I	ACCTGC	1 cut(s)	1202
Acc65I	GGTACC	1 cut(s)	1106
AccB1I	GGYRCC	4 cut(s)	917, 1106, 1157, 1171
AccBSI	CCGCTC	1 cut(s)	112
AccI	GTMKAC	4 cut(s)	60, 267, 574, 966
AccII	CGCG	2 cut(s)	372, 384
AciI	CCGC	6 cut(s)	110, 370, 384, 407, 863, 1326
AclI	AACGTT	1 cut(s)	684
AclWI	GGATC	4 cut(s)	184, 980, 1059, 1186
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	1138
AcuI	CTGAAG	1 cut(s)	563
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	3 cut(s)	617, 1108, 1289
AfiI	CCNNNNNNNGG	1 cut(s)	718
AgsI	TTSAA	8 cut(s)	475, 502, 553, 680, 785, 850, 934, 1138
AjiI	CACGTC	1 cut(s)	1060
AjnI	CCWGG	2 cut(s)	357, 1174
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	6 cut(s)	177, 232, 311, 877, 992, 1234
AluI	AGCT	6 cut(s)	177, 232, 311, 877, 992, 1234
Alw21I	GWGCWC	3 cut(s)	9, 234, 460
Alw26I	GTCTC	6 cut(s)	65, 241, 670, 822, 1066, 1242
AlwI	GGATC	4 cut(s)	184, 980, 1059, 1186
AlwNI	CAGNNNCTG	1 cut(s)	1217
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	4 cut(s)	87, 385, 787, 864
ApeKI	GCWGC	6 cut(s)	491, 630, 633, 767, 1256, 1322
ApoI	RAATTY	1 cut(s)	1138
Asp700I	GAANNNNTTC	2 cut(s)	506, 707
Asp718I	GGTACC	1 cut(s)	1106
AspS9I	GGNCC	1 cut(s)	376
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	4 cut(s)	112, 163, 653, 1012
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	376
BaeGI	GKGCMC	2 cut(s)	404, 922
BanI	GGYRCC	4 cut(s)	917, 1106, 1157, 1171
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	599, 631
BbsI	GAAGAC	4 cut(s)	124, 327, 351, 522
Bbv12I	GWGCWC	3 cut(s)	9, 234, 460
BbvI	GCAGC	6 cut(s)	478, 617, 645, 754, 1243, 1309
BccI	CCATC	4 cut(s)	437, 545, 1021, 1043
BceAI	ACGGC	2 cut(s)	113, 774
BcgI	CGANNNNNNTGC	4 cut(s)	277, 311, 1107, 1141
BciT130I	CCWGG	2 cut(s)	359, 1176
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	6 cut(s)	65, 241, 670, 822, 1066, 1242
BfaI	CTAG	2 cut(s)	971, 1299
BfmI	CTRYAG	1 cut(s)	631
BfuAI	ACCTGC	1 cut(s)	1202
BglII	AGATCT	1 cut(s)	1295
Bme1390I	CCNGG	3 cut(s)	359, 404, 1176
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	1060
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	6 cut(s)	378, 411, 919, 1108, 1159, 1173
BmrFI	CCNGG	3 cut(s)	359, 404, 1176
BmsI	GCATC	6 cut(s)	297, 355, 634, 1026, 1033, 1127
BoxI	GACNNNNGTC	1 cut(s)	77
BpiI	GAAGAC	4 cut(s)	124, 327, 351, 522
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	3 cut(s)	291, 683, 1248
BpuEI	CTTGAG	2 cut(s)	299, 872
BpuMI	CCSGG	1 cut(s)	404
Bsa29I	ATCGAT	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	2 cut(s)	65, 670
BsaJI	CCNNGG	4 cut(s)	790, 867, 922, 1047
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	7 cut(s)	35, 643, 782, 904, 945, 982, 1119
Bse3DI	GCAATG	1 cut(s)	1251
BseBI	CCWGG	2 cut(s)	359, 1176
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	790, 867, 922, 1047
BseGI	GGATG	6 cut(s)	213, 370, 448, 660, 727, 1312
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMI	GCAATG	1 cut(s)	1251
BseMII	CTCAG	5 cut(s)	219, 486, 765, 1007, 1077
BseNI	ACTGG	7 cut(s)	35, 643, 782, 904, 945, 982, 1119
BseRI	GAGGAG	3 cut(s)	83, 263, 1116
BseSI	GKGCMC	2 cut(s)	404, 922
BseXI	GCAGC	6 cut(s)	478, 617, 645, 754, 1243, 1309
BseYI	CCCAGC	1 cut(s)	602
Bsh1236I	CGCG	2 cut(s)	372, 384
BshFI	GGCC	4 cut(s)	89, 387, 789, 866
BshNI	GGYRCC	4 cut(s)	917, 1106, 1157, 1171
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	3 cut(s)	9, 234, 460
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	15, 404
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	6 cut(s)	65, 241, 670, 822, 1066, 1242
BsmBI	CGTCTC	2 cut(s)	241, 1066
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	4 cut(s)	89, 387, 789, 866
Bso31I	GGTCTC	2 cut(s)	65, 670
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	5 cut(s)	9, 234, 404, 460, 922
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	5 cut(s)	189, 985, 1051, 1178, 1295
BspACI	CCGC	6 cut(s)	110, 370, 384, 407, 863, 1326
BspANI	GGCC	4 cut(s)	89, 387, 789, 866
BspCNI	CTCAG	5 cut(s)	220, 487, 764, 1006, 1076
BspDI	ATCGAT	1 cut(s)	291
BspFNI	CGCG	2 cut(s)	372, 384
BspLI	GGNNCC	6 cut(s)	378, 411, 919, 1108, 1159, 1173
BspMAI	CTGCAG	1 cut(s)	635
BspMI	ACCTGC	1 cut(s)	1202
BspPI	GGATC	4 cut(s)	184, 980, 1059, 1186
BspT107I	GGYRCC	4 cut(s)	917, 1106, 1157, 1171
BspTNI	GGTCTC	2 cut(s)	65, 670
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	1251
BsrFI	RCCGGY	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	7 cut(s)	35, 643, 782, 904, 945, 982, 1119
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	4 cut(s)	790, 867, 922, 1047
BssMI	GATC	5 cut(s)	189, 985, 1051, 1178, 1295
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	3 cut(s)	867, 922, 1047
Bst2UI	CCWGG	2 cut(s)	359, 1176
Bst4CI	ACNGT	2 cut(s)	586, 1096
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	5 cut(s)	9, 179, 370, 765, 1132
BstDEI	CTNAG	5 cut(s)	228, 495, 751, 993, 1063
BstDSI	CCRYGG	1 cut(s)	790
BstF5I	GGATG	6 cut(s)	213, 370, 448, 660, 727, 1312
BstFNI	CGCG	2 cut(s)	372, 384
BstKTI	GATC	5 cut(s)	192, 988, 1054, 1181, 1298
BstMAI	GTCTC	6 cut(s)	65, 241, 670, 822, 1066, 1242
BstMBI	GATC	5 cut(s)	189, 985, 1051, 1178, 1295
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 95, 109, 488, 883, 1223, 1256, 1322
BstNI	CCWGG	2 cut(s)	359, 1176
BstNSI	RCATGY	2 cut(s)	886, 944
BstPAI	GACNNNNGTC	1 cut(s)	77
BstSCI	CCNGG	3 cut(s)	357, 402, 1174
BstSFI	CTRYAG	1 cut(s)	631
BstSLI	GKGCMC	2 cut(s)	404, 922
BstUI	CGCG	2 cut(s)	372, 384
BstV1I	GCAGC	6 cut(s)	478, 617, 645, 754, 1243, 1309
BstV2I	GAAGAC	4 cut(s)	124, 327, 351, 522
BstX2I	RGATCY	4 cut(s)	189, 985, 1051, 1295
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	4 cut(s)	189, 985, 1051, 1295
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	89, 387, 789, 866
BsuTUI	ATCGAT	1 cut(s)	291
BtgI	CCRYGG	1 cut(s)	790
BtgZI	GCGATG	1 cut(s)	1104
BtrI	CACGTC	1 cut(s)	1060
BtsCI	GGATG	6 cut(s)	213, 370, 448, 660, 727, 1312
BtsI	GCAGTG	2 cut(s)	1012, 1311
BtsIMutI	CAGTG	6 cut(s)	42, 636, 975, 1012, 1071, 1311
BveI	ACCTGC	1 cut(s)	1202
Cac8I	GCNNGC	5 cut(s)	9, 179, 370, 765, 1132
CaiI	CAGNNNCTG	1 cut(s)	1217
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	376
ClaI	ATCGAT	1 cut(s)	291
CseI	GACGC	2 cut(s)	104, 246
Csp6I	GTAC	3 cut(s)	616, 1107, 1288
CviQI	GTAC	3 cut(s)	616, 1107, 1288
DdeI	CTNAG	5 cut(s)	228, 495, 751, 993, 1063
DpnI	GATC	5 cut(s)	191, 987, 1053, 1180, 1297
DpnII	GATC	5 cut(s)	189, 985, 1051, 1178, 1295
DrdI	GACNNNNNNGTC	2 cut(s)	353, 722
DseDI	GACNNNNNNGTC	2 cut(s)	353, 722
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	3 cut(s)	867, 922, 1047
Eco147I	AGGCCT	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	2 cut(s)	65, 670
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	563
Eco88I	CYCGRG	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	357, 1174
EcoT14I	CCWWGG	3 cut(s)	867, 922, 1047
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	3 cut(s)	867, 922, 1047
Esp3I	CGTCTC	2 cut(s)	241, 1066
FaqI	GGGAC	1 cut(s)	362
FauI	CCCGC	1 cut(s)	377
FblI	GTMKAC	4 cut(s)	60, 267, 574, 966
FokI	GGATG	6 cut(s)	200, 377, 455, 667, 734, 1319
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	971, 1299
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	3 cut(s)	291, 683, 1248
HaeIII	GGCC	4 cut(s)	89, 387, 789, 866
HapII	CCGG	2 cut(s)	15, 404
HgaI	GACGC	2 cut(s)	104, 246
Hin1I	GRCGYC	1 cut(s)	96
HincII	GTYRAC	2 cut(s)	61, 775
HindII	GTYRAC	2 cut(s)	61, 775
HinfI	GANTC	3 cut(s)	304, 471, 624
HpaII	CCGG	2 cut(s)	15, 404
HphI	GGTGA	4 cut(s)	112, 163, 653, 1012
Hpy166II	GTNNAC	5 cut(s)	61, 268, 575, 775, 967
Hpy188I	TCNGA	8 cut(s)	94, 229, 303, 470, 582, 754, 996, 1148
Hpy188III	TCNNGA	5 cut(s)	689, 700, 889, 983, 1003
Hpy8I	GTNNAC	5 cut(s)	61, 268, 575, 775, 967
Hpy99I	CGWCG	6 cut(s)	62, 65, 98, 158, 329, 332
HpyAV	CCTTC	7 cut(s)	271, 289, 433, 779, 835, 1086, 1147
HpyCH4III	ACNGT	2 cut(s)	586, 1096
HpyCH4IV	ACGT	2 cut(s)	684, 1059
HpyCH4V	TGCA	5 cut(s)	434, 633, 908, 938, 1017
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 95, 109, 488, 883, 1223, 1256, 1322
HpyF3I	CTNAG	5 cut(s)	228, 495, 751, 993, 1063
HpySE526I	ACGT	2 cut(s)	684, 1059
Hsp92I	GRCGYC	1 cut(s)	96
KpnI	GGTACC	1 cut(s)	1110
Kzo9I	GATC	5 cut(s)	189, 985, 1051, 1178, 1295
LmnI	GCTCC	2 cut(s)	4, 874
Lsp1109I	GCAGC	6 cut(s)	478, 617, 645, 754, 1243, 1309
LweI	GCATC	6 cut(s)	297, 355, 634, 1026, 1033, 1127
MaeI	CTAG	2 cut(s)	971, 1299
MaeII	ACGT	2 cut(s)	684, 1059
MaeIII	GTNAC	5 cut(s)	740, 835, 947, 1066, 1309
MalI	GATC	5 cut(s)	191, 987, 1053, 1180, 1297
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	5 cut(s)	189, 985, 1051, 1178, 1295
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	4 cut(s)	189, 985, 1051, 1295
MhlI	GDGCHC	5 cut(s)	9, 234, 404, 460, 922
MluCI	AATT	3 cut(s)	526, 909, 1138
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	2 cut(s)	117, 222
MroXI	GAANNNNTTC	2 cut(s)	506, 707
MseI	TTAA	2 cut(s)	879, 1272
MslI	CAYNNNNRTG	3 cut(s)	542, 1022, 1025
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	2 cut(s)	15, 404
MspR9I	CCNGG	3 cut(s)	359, 404, 1176
MunI	CAATTG	1 cut(s)	909
MvaI	CCWGG	2 cut(s)	359, 1176
MvnI	CGCG	2 cut(s)	372, 384
MwoI	GCNNNNNNNGC	8 cut(s)	24, 95, 109, 488, 883, 1223, 1256, 1322
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	5 cut(s)	189, 985, 1051, 1178, 1295
NlaIV	GGNNCC	6 cut(s)	378, 411, 919, 1108, 1159, 1173
NmuCI	GTSAC	3 cut(s)	835, 1066, 1309
NspI	RCATGY	2 cut(s)	886, 944
PaeR7I	CTCGAG	1 cut(s)	395
PaqCI	CACCTGC	1 cut(s)	1202
PceI	AGGCCT	1 cut(s)	89
PdmI	GAANNNNTTC	2 cut(s)	506, 707
PfeI	GAWTC	2 cut(s)	471, 624
PfoI	TCCNGGA	1 cut(s)	357
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	684
Psp6I	CCWGG	2 cut(s)	357, 1174
PspFI	CCCAGC	1 cut(s)	602
PspGI	CCWGG	2 cut(s)	357, 1174
PspN4I	GGNNCC	6 cut(s)	378, 411, 919, 1108, 1159, 1173
PspPI	GGNCC	1 cut(s)	376
PspXI	VCTCGAGB	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	635
PstNI	CAGNNNCTG	1 cut(s)	1217
PsuI	RGATCY	4 cut(s)	189, 985, 1051, 1295
PvuII	CAGCTG	1 cut(s)	177
RsaI	GTAC	3 cut(s)	617, 1108, 1289
RsaNI	GTAC	3 cut(s)	616, 1107, 1288
RseI	CAYNNNNRTG	3 cut(s)	542, 1022, 1025
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	879, 1272
Sau3AI	GATC	5 cut(s)	189, 985, 1051, 1178, 1295
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	3 cut(s)	359, 404, 1176
SduI	GDGCHC	5 cut(s)	9, 234, 404, 460, 922
SfaNI	GCATC	6 cut(s)	297, 355, 634, 1026, 1033, 1127
SfcI	CTRYAG	1 cut(s)	631
Sfr274I	CTCGAG	1 cut(s)	395
SgrDI	CGTCGACG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	3 cut(s)	542, 1022, 1025
SmlI	CTYRAG	3 cut(s)	314, 395, 887
SmoI	CTYRAG	3 cut(s)	314, 395, 887
Sse9I	AATT	3 cut(s)	526, 909, 1138
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	6 cut(s)	110, 370, 384, 407, 863, 1326
SspMI	CTAG	2 cut(s)	971, 1299
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	357, 402, 1174
StyI	CCWWGG	3 cut(s)	867, 922, 1047
TaaI	ACNGT	2 cut(s)	586, 1096
TaiI	ACGT	2 cut(s)	687, 1062
TaqI	TCGA	5 cut(s)	60, 291, 396, 690, 1002
TasI	AATT	3 cut(s)	526, 909, 1138
TatI	WGTACW	2 cut(s)	615, 1287
TauI	GCSGC	4 cut(s)	112, 387, 866, 1328
TfiI	GAWTC	2 cut(s)	471, 624
Tru1I	TTAA	2 cut(s)	879, 1272
Tru9I	TTAA	2 cut(s)	879, 1272
TscAI	CASTG	6 cut(s)	42, 643, 982, 1019, 1071, 1318
TseFI	GTSAC	3 cut(s)	835, 1066, 1309
TseI	GCWGC	6 cut(s)	491, 630, 633, 767, 1256, 1322
Tsp45I	GTSAC	3 cut(s)	835, 1066, 1309
TspDTI	ATGAA	3 cut(s)	499, 671, 1298
TspGWI	ACGGA	2 cut(s)	142, 182
TspRI	CASTG	6 cut(s)	42, 643, 982, 1019, 1071, 1318
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	1 cut(s)	1138
XceI	RCATGY	2 cut(s)	886, 944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	395
XmiI	GTMKAC	4 cut(s)	60, 267, 574, 966
XmnI	GAANNNNTTC	2 cut(s)	506, 707
XspI	CTAG	2 cut(s)	971, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.