Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Forward (+)

47007813 .. 47010643

Gene Structure 2831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG256600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGGACGTCCGAAGGCGATCGGCGATGGAGCAGCCCACTAAGGGAGCCGGCGGCAGGCCGGTGAAAATGAAAGTGAAGATGGTCGATCAAAACGACGCCGTTAAGGCCTCCGACGCGTTGCCGCTGCCTATGTACCTGACAAATGCGGTCTTCTTCACTCTCTTCTTCTCCGTCGTCTACTTCCTGCTCACTCGCTGGCGCGAGAAGATCCGCACCTCCACTCCTCTCCACATGGTCAATCTGTCTGAGATTGTAGCCATCCTTGCCTTCGTAGCCTCCTTCATCTACCTCCTCGGCTTCTTCGGCATCGATTTCGTCCAGTCCTTGATTCTCCGGCCCAGTCAAGACGTTTGGGCCGCCGAGGATGACGAGGAGGACATTATTCTCAAGGAGGATGCCCGCAAAGTGCCTTGTGGCCAGGCCCTTGATTGTTCAATTCCCAAAATTGCTCCAATGGCTCCACTGAAACCTGCTCTTAAAGTTGCACAGAAGGTGTTTGATAAAGAGGTGGTGAGCGAGACCTCGCCGCCGACCGCAGAAGACGAAGAGATCATCAACGCTGTGGTGGCTGGAACCATTCCCTCCTACTCACTCGAGACAAAGCTCGGCGATTGCAAGAGGGCAGCTTCTGTCAGGCGTGAGGCTTTGCAGAGAGTTACAGGCAAGTCTCTTGAGGGTTTGCCATTGGACGGATTCGATTACGAGTCAATTCTGGGTCAATGCTGTGAGATGCCAGTCGGATATGTCACCATCCCTGTTGGGATTGCTGGCCCTATTATGCTCGATGGAAGAGAGTTCTCAATCCCCATGGCCACAACTGAAGGTTGCTTGGTGGCCAGTACCAACCGCGGTTGCAAAGCCATCAACCTGTCCGGTGGAGCTGCCAGTGTGCTGTTGAAAGATGGAATGACCAGAGCACCTGTTGTCAGATTCAACTCGGCTAAGAGAGCTGCTGAGTTGAAGTTCTTCATGGAAGACCCTGAGAATGCCGACACCATAGCCACCCTTTTCAACAAATCAAGCAGATTTGGTAGACTTCAATCAGTTAACTGTGCCGTTGCTGGGAAGAACCTGTACATGAGGTTCTGCTGCAGCACTGGTGATGCTATGGGGATGAACATGGTGTCTAAAGGTGTTCAAAACGTTCTCGATTTCCTCCAGAGTGACTTCCCTGACATGGATGTCATTGGCATTTCTGGTAACTACTGCTCAGACAAGAAGCCTGCTGCTGTCAACTGGATCGAAGGCCGTGGCAAGTCTGTGGTCTGTGAGGCTGTGATCAAGGGAGACATAGTGACGAAGGTTTTGAAAACCAACGTGGCGGCTTTGGTGGAGCTCAACATGCTCAAGAACCTTACTGGTTCCGCTATTGCTGGTGCTCTTGGTGGTTTCAATGCACATGCCAGTAACATTGTTTCGGCTGTGTACCTTGCCACTGGTCAAGACCCTGCTCAGAACATTGAGAGTTCTCACTGTATCACCATGATGGAAGCCATCAATGATGGCAAGGATCTTCACGTCTCTGTCACCATGCCGTCCATTGAGGTTGGTACCGTAGGAGGAGGGACCCAACTTGCATCCCAGTCAGCATGTTTGAACTTGCTTGGAGTGAAGGGTGCTAACAGAGAGGCACCAGGAGCGAACGCAAGGCAATTGGCCAGTGTTGTAGCTGCGTCGGTTCTTGCGGGAGAGCTTTCTCTTATGTCTGCTATCGCTGCTGGTCAGCTCGTTAAGAGCCACATGAAGTACAACCGATCCAGCAAAGATGTCTCAACAATGGTTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

596

Amino Acids

63.61

Weight (kDa)

6.57

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	209 - 585	7.4e-145	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1181
AatII	GACGTC	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	478
Acc65I	GGTACC	1 cut(s)	1550
AccB1I	GGYRCC	2 cut(s)	1550, 1630
AccI	GTMKAC	2 cut(s)	177, 1033
AccII	CGCG	3 cut(s)	116, 201, 849
AclI	AACGTT	1 cut(s)	1143
AclWI	GGATC	4 cut(s)	202, 1247, 1518, 1749
AcoI	YGGCCR	4 cut(s)	415, 810, 834, 1656
AcuI	CTGAAG	1 cut(s)	840
AcyI	GRCGYC	2 cut(s)	6, 96
AfaI	GTAC	6 cut(s)	134, 841, 1076, 1427, 1552, 1748
AfiI	CCNNNNNNNGG	5 cut(s)	41, 54, 689, 1062, 1177
AflIII	ACRYGT	1 cut(s)	114
AjiI	CACGTC	1 cut(s)	1519
AjnI	CCWGG	2 cut(s)	417, 1633
AluBI	AGCT	8 cut(s)	604, 626, 881, 950, 1336, 1670, 1693, 1726
AluI	AGCT	8 cut(s)	604, 626, 881, 950, 1336, 1670, 1693, 1726
Alw21I	GWGCWC	3 cut(s)	919, 1338, 1381
Alw26I	GTCTC	6 cut(s)	512, 590, 672, 1281, 1525, 1774
AlwI	GGATC	4 cut(s)	202, 1247, 1518, 1749
AlwNI	CAGNNNCTG	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	593
ArsI	GACNNNNNNTTYG	2 cut(s)	1288, 1320
Asp700I	GAANNNNTTC	1 cut(s)	965
Asp718I	GGTACC	1 cut(s)	1550
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	5 cut(s)	336, 354, 421, 770, 1566
AsuHPI	GGTGA	6 cut(s)	73, 523, 739, 1112, 1471, 1519
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	1566
BalI	TGGCCA	4 cut(s)	417, 812, 836, 1658
BanI	GGYRCC	2 cut(s)	1550, 1630
BanII	GRGCYC	1 cut(s)	1338
BarI	GAAGNNNNNNTAC	2 cut(s)	1058, 1090
BbsI	GAAGAC	3 cut(s)	142, 546, 981
Bbv12I	GWGCWC	3 cut(s)	919, 1338, 1381
BceAI	ACGGC	4 cut(s)	83, 1040, 1233, 1519
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	2 cut(s)	419, 1635
BclI	TGATCA	1 cut(s)	1278
BcoDI	GTCTC	6 cut(s)	512, 590, 672, 1281, 1525, 1774
BfmI	CTRYAG	1 cut(s)	1090
BfuAI	ACCTGC	1 cut(s)	478
BglI	GCCNNNNNGGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	419, 1635
Bme18I	GGWCC	1 cut(s)	1566
BmeT110I	CYCGRG	1 cut(s)	593
BmgBI	CACGTC	1 cut(s)	1519
BmgT120I	GGNCC	5 cut(s)	336, 354, 421, 770, 1566
BmiI	GGNNCC	8 cut(s)	46, 459, 574, 1363, 1552, 1567, 1568, 1632
BmrFI	CCNGG	2 cut(s)	419, 1635
BmrI	ACTGGG	2 cut(s)	333, 1576
BmsI	GCATC	5 cut(s)	315, 385, 720, 1093, 1586
BmuI	ACTGGG	2 cut(s)	333, 1576
BpiI	GAAGAC	3 cut(s)	142, 546, 981
BpmI	CTGGAG	1 cut(s)	1142
BpuEI	CTTGAG	3 cut(s)	371, 692, 1331
Bsa29I	ATCGAT	1 cut(s)	309
BsaHI	GRCGYC	2 cut(s)	6, 96
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	5 cut(s)	292, 360, 807, 847, 1249
BsaWI	WCCGGW	1 cut(s)	872
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 1278, 1308
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 54, 689, 1062, 1177
Bse118I	RCCGGY	2 cut(s)	47, 58
BseBI	CCWGG	2 cut(s)	419, 1635
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	5 cut(s)	292, 360, 807, 847, 1249
BseGI	GGATG	7 cut(s)	258, 370, 400, 750, 1119, 1186, 1577
BseLI	CCNNNNNNNGG	5 cut(s)	41, 54, 689, 1062, 1177
BseMII	CTCAG	5 cut(s)	237, 945, 972, 1224, 1466
BseRI	GAGGAG	4 cut(s)	213, 281, 386, 1575
BseYI	CCCAGC	1 cut(s)	1061
Bsh1236I	CGCG	3 cut(s)	116, 201, 849
Bsh1285I	CGRYCG	2 cut(s)	20, 534
BshNI	GGYRCC	2 cut(s)	1550, 1630
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	2 cut(s)	20, 534
BsiHKAI	GWGCWC	3 cut(s)	919, 1338, 1381
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	4 cut(s)	48, 59, 334, 873
BslFI	GGGAC	1 cut(s)	1579
BslI	CCNNNNNNNGG	5 cut(s)	41, 54, 689, 1062, 1177
BsmAI	GTCTC	6 cut(s)	512, 590, 672, 1281, 1525, 1774
BsmBI	CGTCTC	1 cut(s)	1525
BsmFI	GGGAC	1 cut(s)	1579
BsmI	GAATGC	1 cut(s)	991
Bso31I	GGTCTC	1 cut(s)	512
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	3 cut(s)	919, 1338, 1381
Bsp1407I	TGTACA	1 cut(s)	1074
Bsp143I	GATC	8 cut(s)	17, 85, 207, 549, 1239, 1278, 1510, 1754
Bsp19I	CCATGG	1 cut(s)	807
BspCNI	CTCAG	5 cut(s)	238, 946, 973, 1223, 1465
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	3 cut(s)	116, 201, 849
BspLI	GGNNCC	8 cut(s)	46, 459, 574, 1363, 1552, 1567, 1568, 1632
BspMAI	CTGCAG	1 cut(s)	1094
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	4 cut(s)	202, 1247, 1518, 1749
BspT107I	GGYRCC	2 cut(s)	1550, 1630
BspTNI	GGTCTC	1 cut(s)	512
BsrFI	RCCGGY	2 cut(s)	47, 58
BsrGI	TGTACA	1 cut(s)	1074
BssAI	RCCGGY	2 cut(s)	47, 58
BssECI	CCNNGG	5 cut(s)	292, 360, 807, 847, 1249
BssMI	GATC	8 cut(s)	17, 85, 207, 549, 1239, 1278, 1510, 1754
BssNI	GRCGYC	2 cut(s)	6, 96
BssT1I	CCWWGG	1 cut(s)	807
Bst2UI	CCWGG	2 cut(s)	419, 1635
Bst4CI	ACNGT	3 cut(s)	1052, 1475, 1555
Bst6I	CTCTTC	3 cut(s)	167, 540, 784
BstACI	GRCGYC	2 cut(s)	6, 96
BstAUI	TGTACA	1 cut(s)	1074
BstC8I	GCNNGC	6 cut(s)	49, 56, 197, 400, 769, 1224
BstDEI	CTNAG	7 cut(s)	39, 246, 942, 954, 981, 1210, 1452
BstDSI	CCRYGG	3 cut(s)	807, 847, 1249
BstF5I	GGATG	7 cut(s)	258, 370, 400, 750, 1119, 1186, 1577
BstFNI	CGCG	3 cut(s)	116, 201, 849
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	8 cut(s)	20, 88, 210, 552, 1242, 1281, 1513, 1757
BstMAI	GTCTC	6 cut(s)	512, 590, 672, 1281, 1525, 1774
BstMBI	GATC	8 cut(s)	17, 85, 207, 549, 1239, 1278, 1510, 1754
BstMCI	CGRYCG	2 cut(s)	20, 534
BstNI	CCWGG	2 cut(s)	419, 1635
BstNSI	RCATGY	3 cut(s)	1345, 1403, 1593
BstSCI	CCNGG	2 cut(s)	417, 1633
BstSFI	CTRYAG	1 cut(s)	1090
BstUI	CGCG	3 cut(s)	116, 201, 849
BstV2I	GAAGAC	3 cut(s)	142, 546, 981
BstX2I	RGATCY	2 cut(s)	207, 1510
BstYI	RGATCY	2 cut(s)	207, 1510
Bsu15I	ATCGAT	1 cut(s)	309
BsuTUI	ATCGAT	1 cut(s)	309
BtgI	CCRYGG	3 cut(s)	807, 847, 1249
BtgZI	GCGATG	1 cut(s)	38
BtrI	CACGTC	1 cut(s)	1519
BtsCI	GGATG	7 cut(s)	258, 370, 400, 750, 1119, 1186, 1577
BtsIMutI	CAGTG	6 cut(s)	461, 892, 1095, 1434, 1471, 1666
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	6 cut(s)	49, 56, 197, 400, 769, 1224
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	1 cut(s)	201
Cfr10I	RCCGGY	2 cut(s)	47, 58
Cfr13I	GGNCC	5 cut(s)	336, 354, 421, 770, 1566
Cfr42I	CCGCGG	1 cut(s)	850
ClaI	ATCGAT	1 cut(s)	309
CseI	GACGC	3 cut(s)	104, 122, 1662
Csp6I	GTAC	6 cut(s)	133, 840, 1075, 1426, 1551, 1747
CviQI	GTAC	6 cut(s)	133, 840, 1075, 1426, 1551, 1747
DdeI	CTNAG	7 cut(s)	39, 246, 942, 954, 981, 1210, 1452
DpnI	GATC	8 cut(s)	19, 87, 209, 551, 1241, 1280, 1512, 1756
DpnII	GATC	8 cut(s)	17, 85, 207, 549, 1239, 1278, 1510, 1754
DrdI	GACNNNNNNGTC	1 cut(s)	1181
DseDI	GACNNNNNNGTC	1 cut(s)	1181
EaeI	YGGCCR	4 cut(s)	415, 810, 834, 1656
Eam1104I	CTCTTC	3 cut(s)	167, 540, 784
EarI	CTCTTC	3 cut(s)	167, 540, 784
Ecl136II	GAGCTC	1 cut(s)	1336
Eco130I	CCWWGG	1 cut(s)	807
Eco147I	AGGCCT	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	1338
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	1566
Eco53kI	GAGCTC	1 cut(s)	1336
Eco57I	CTGAAG	1 cut(s)	840
Eco88I	CYCGRG	1 cut(s)	593
EcoICRI	GAGCTC	1 cut(s)	1336
EcoO109I	RGGNCCY	2 cut(s)	421, 1566
EcoRII	CCWGG	2 cut(s)	417, 1633
EcoT14I	CCWWGG	1 cut(s)	807
EcoT38I	GRGCYC	1 cut(s)	1338
ErhI	CCWWGG	1 cut(s)	807
Esp3I	CGTCTC	1 cut(s)	1525
FaqI	GGGAC	1 cut(s)	1579
FauI	CCCGC	2 cut(s)	407, 1678
FbaI	TGATCA	1 cut(s)	1278
FblI	GTMKAC	2 cut(s)	177, 1033
FokI	GGATG	7 cut(s)	245, 377, 407, 737, 1126, 1193, 1564
FriOI	GRGCYC	1 cut(s)	1338
GlaI	GCGC	1 cut(s)	200
GsaI	CCCAGC	1 cut(s)	1065
GsuI	CTGGAG	1 cut(s)	1142
HapII	CCGG	4 cut(s)	48, 59, 334, 873
HgaI	GACGC	3 cut(s)	104, 122, 1662
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	2 cut(s)	6, 96
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	2 cut(s)	1048, 1234
HindII	GTYRAC	2 cut(s)	1048, 1234
HinfI	GANTC	4 cut(s)	328, 693, 704, 930
HpaI	GTTAAC	1 cut(s)	1048
HpaII	CCGG	4 cut(s)	48, 59, 334, 873
HphI	GGTGA	6 cut(s)	73, 523, 739, 1112, 1471, 1519
Hpy166II	GTNNAC	5 cut(s)	178, 1034, 1048, 1234, 1426
Hpy188I	TCNGA	7 cut(s)	11, 112, 247, 740, 929, 1213, 1455
Hpy188III	TCNNGA	7 cut(s)	344, 595, 671, 1148, 1159, 1348, 1442
Hpy8I	GTNNAC	5 cut(s)	178, 1034, 1048, 1234, 1426
Hpy99I	CGWCG	4 cut(s)	98, 116, 176, 1678
HpyAV	CCTTC	8 cut(s)	6, 277, 289, 484, 815, 1238, 1294, 1606
HpyCH4III	ACNGT	3 cut(s)	1052, 1475, 1555
HpyCH4IV	ACGT	5 cut(s)	6, 348, 1143, 1317, 1518
HpyCH4V	TGCA	7 cut(s)	485, 615, 649, 855, 1092, 1397, 1577
HpyF3I	CTNAG	7 cut(s)	39, 246, 942, 954, 981, 1210, 1452
HpySE526I	ACGT	5 cut(s)	6, 348, 1143, 1317, 1518
Hsp92I	GRCGYC	2 cut(s)	6, 96
HspAI	GCGC	1 cut(s)	199
KflI	GGGWCCC	1 cut(s)	1566
KpnI	GGTACC	1 cut(s)	1554
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	1278
KspAI	GTTAAC	1 cut(s)	1048
KspI	CCGCGG	1 cut(s)	850
Kzo9I	GATC	8 cut(s)	17, 85, 207, 549, 1239, 1278, 1510, 1754
LmnI	GCTCC	7 cut(s)	28, 44, 454, 463, 878, 1333, 1637
LweI	GCATC	5 cut(s)	315, 385, 720, 1093, 1586
MaeII	ACGT	5 cut(s)	6, 348, 1143, 1317, 1518
MaeIII	GTNAC	7 cut(s)	655, 745, 1163, 1199, 1294, 1406, 1525
MalI	GATC	8 cut(s)	19, 87, 209, 551, 1241, 1280, 1512, 1756
MboI	GATC	8 cut(s)	17, 85, 207, 549, 1239, 1278, 1510, 1754
MfeI	CAATTG	1 cut(s)	1652
MflI	RGATCY	2 cut(s)	207, 1510
MhlI	GDGCHC	3 cut(s)	919, 1338, 1381
MlsI	TGGCCA	4 cut(s)	417, 812, 836, 1658
MluCI	AATT	4 cut(s)	435, 444, 708, 1652
MluI	ACGCGT	1 cut(s)	114
MluNI	TGGCCA	4 cut(s)	417, 812, 836, 1658
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	2 cut(s)	135, 718
Mox20I	TGGCCA	4 cut(s)	417, 812, 836, 1658
MroNI	GCCGGC	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	965
MscI	TGGCCA	4 cut(s)	417, 812, 836, 1658
MseI	TTAA	5 cut(s)	102, 477, 1047, 1731, 1789
MslI	CAYNNNNRTG	1 cut(s)	1484
Msp20I	TGGCCA	4 cut(s)	417, 812, 836, 1658
MspA1I	CMGCKG	2 cut(s)	124, 849
MspI	CCGG	4 cut(s)	48, 59, 334, 873
MspR9I	CCNGG	2 cut(s)	419, 1635
MunI	CAATTG	1 cut(s)	1652
Mva1269I	GAATGC	1 cut(s)	991
MvaI	CCWGG	2 cut(s)	419, 1635
MvnI	CGCG	3 cut(s)	116, 201, 849
NaeI	GCCGGC	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	8 cut(s)	17, 85, 207, 549, 1239, 1278, 1510, 1754
NgoMIV	GCCGGC	1 cut(s)	47
NlaIV	GGNNCC	8 cut(s)	46, 459, 574, 1363, 1552, 1567, 1568, 1632
NmeAIII	GCCGAG	4 cut(s)	273, 385, 585, 917
NmuCI	GTSAC	4 cut(s)	745, 1163, 1294, 1525
NspI	RCATGY	3 cut(s)	1345, 1403, 1593
PaeR7I	CTCGAG	1 cut(s)	593
PceI	AGGCCT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	991
PdiI	GCCGGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	3 cut(s)	328, 693, 930
Ple19I	CGATCG	1 cut(s)	20
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
PpuMI	RGGWCCY	1 cut(s)	1566
Psp124BI	GAGCTC	1 cut(s)	1338
Psp1406I	AACGTT	1 cut(s)	1143
Psp5II	RGGWCCY	1 cut(s)	1566
Psp6I	CCWGG	2 cut(s)	417, 1633
PspFI	CCCAGC	1 cut(s)	1061
PspGI	CCWGG	2 cut(s)	417, 1633
PspN4I	GGNNCC	8 cut(s)	46, 459, 574, 1363, 1552, 1567, 1568, 1632
PspPI	GGNCC	5 cut(s)	336, 354, 421, 770, 1566
PspPPI	RGGWCCY	1 cut(s)	1566
PsrI	GAACNNNNNNTAC	2 cut(s)	1067, 1099
PstI	CTGCAG	1 cut(s)	1094
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	2 cut(s)	207, 1510
PvuI	CGATCG	1 cut(s)	20
RsaI	GTAC	6 cut(s)	134, 841, 1076, 1427, 1552, 1748
RsaNI	GTAC	6 cut(s)	133, 840, 1075, 1426, 1551, 1747
RseI	CAYNNNNRTG	1 cut(s)	1484
SacI	GAGCTC	1 cut(s)	1338
SacII	CCGCGG	1 cut(s)	850
SaqAI	TTAA	5 cut(s)	102, 477, 1047, 1731, 1789
Sau3AI	GATC	8 cut(s)	17, 85, 207, 549, 1239, 1278, 1510, 1754
Sau96I	GGNCC	5 cut(s)	336, 354, 421, 770, 1566
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	2 cut(s)	419, 1635
SduI	GDGCHC	3 cut(s)	919, 1338, 1381
SfaNI	GCATC	5 cut(s)	315, 385, 720, 1093, 1586
SfcI	CTRYAG	1 cut(s)	1090
Sfr274I	CTCGAG	1 cut(s)	593
Sfr303I	CCGCGG	1 cut(s)	850
SgrBI	CCGCGG	1 cut(s)	850
SinI	GGWCC	1 cut(s)	1566
SlaI	CTCGAG	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	1484
SmlI	CTYRAG	4 cut(s)	386, 593, 671, 1346
SmoI	CTYRAG	4 cut(s)	386, 593, 671, 1346
Sse9I	AATT	4 cut(s)	435, 444, 708, 1652
SseBI	AGGCCT	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	1338
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	417, 1633
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	3 cut(s)	1052, 1475, 1555
TaiI	ACGT	5 cut(s)	9, 351, 1146, 1320, 1521
TaqI	TCGA	7 cut(s)	84, 309, 594, 696, 783, 1149, 1242
TasI	AATT	4 cut(s)	435, 444, 708, 1652
TatI	WGTACW	2 cut(s)	1074, 1746
TauI	GCSGC	5 cut(s)	54, 124, 359, 529, 1325
TfiI	GAWTC	3 cut(s)	328, 693, 930
Tru1I	TTAA	5 cut(s)	102, 477, 1047, 1731, 1789
Tru9I	TTAA	5 cut(s)	102, 477, 1047, 1731, 1789
TscAI	CASTG	6 cut(s)	468, 892, 1102, 1441, 1478, 1666
TseFI	GTSAC	4 cut(s)	745, 1163, 1294, 1525
Tsp45I	GTSAC	4 cut(s)	745, 1163, 1294, 1525
TspDTI	ATGAA	5 cut(s)	83, 271, 958, 1130, 1757
TspGWI	ACGGA	2 cut(s)	160, 705
TspRI	CASTG	6 cut(s)	468, 892, 1102, 1441, 1478, 1666
VpaK11BI	GGWCC	1 cut(s)	1566
XceI	RCATGY	3 cut(s)	1345, 1403, 1593
XhoI	CTCGAG	1 cut(s)	593
XmiI	GTMKAC	2 cut(s)	177, 1033
XmnI	GAANNNNTTC	1 cut(s)	965
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.