Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Reverse (-)

19846928 .. 19847881

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0140400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCTTCTCGGTTTTGGCTTTGGTTTTGTTTCGGTGTTTTGGAATGCTTTTTGGACTTTGTTTCGTGGATTTGTGGCTGGACTGCTATTTTGCAATGCCATGGCTGTACTGAATGAGCACAGGTTTCTCGGTCGAATGGGGCTAACTCTGAAAGATGATGAAGCTGGGGATGATGAGAGGAAGAAGCTCATCACTTTCAAGTATTGGGTCACACGGATTTTACAGGCCGCCCGATGGTCGAGGCAAATCCTCATATTGGTGAACGGCATCACTGTTTGCATTCTGTTGTTGCTTGGGTACTGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

102

Amino Acids

11.81

Weight (kDa)

9.51

Isoelectric Point (pI)

21.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yos1	PF08571	25 - 99	1.4e-13	Yos1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	228
AfaI	GTAC	2 cut(s)	108, 299
AfiI	CCNNNNNNNGG	2 cut(s)	234, 256
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	2 cut(s)	164, 187
AluI	AGCT	2 cut(s)	164, 187
Alw21I	GWGCWC	1 cut(s)	120
AoxI	GGCC	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AsuHPI	GGTGA	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	307
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmsI	GCATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 256
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	234, 256
BseMI	GCAATG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	234, 256
BsmI	GAATGC	2 cut(s)	49, 279
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	274
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	175
BstMCI	CGRYCG	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	107, 298
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	8 cut(s)	18, 77, 104, 142, 164, 187, 227, 304
CviKI_1	RGCY	8 cut(s)	18, 77, 104, 142, 164, 187, 227, 304
CviQI	GTAC	2 cut(s)	107, 298
Eco130I	CCWWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	103
FaiI	YATR	2 cut(s)	101, 254
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	307
GluI	GCNGC	1 cut(s)	228
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	150
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	93, 279
Hsp92II	CATG	1 cut(s)	103
LpnPI	CCDG	5 cut(s)	63, 106, 150, 209, 286
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	120
MnlI	CCTC	3 cut(s)	171, 234, 260
MslI	CAYNNNNRTG	1 cut(s)	257
Mva1269I	GAATGC	2 cut(s)	49, 279
NcoI	CCATGG	1 cut(s)	99
NlaIII	CATG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	208
PctI	GAATGC	2 cut(s)	49, 279
PkrI	GCNGC	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	164
RsaI	GTAC	2 cut(s)	108, 299
RsaNI	GTAC	2 cut(s)	107, 298
RseI	CAYNNNNRTG	1 cut(s)	257
SatI	GCNGC	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	3 cut(s)	125, 166, 189
SfaNI	GCATC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	257
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	133, 239
TaqII	GACCGA	1 cut(s)	119
TatI	WGTACW	1 cut(s)	106
TauI	GCSGC	1 cut(s)	230
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	277
XspI	CTAG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.