Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8270795.1

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 604

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8270795.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 604 bp

tgtcattggcatttctggtaactactgctcagacaaaaagcctgctgctgttaactggattgaaggccgtggcaaatctgtagtttgtgaggccgtgatcaagggagacatagtgacgaaggtgttgaaaaccaacgtggcggccttggtggagcttaacatgctcaagaaccttactggttctgccatcgctggtgctcttggtgggttcaatgctcatgccagtaacattgtttctgcagtctaccttgcaactggccaagaccctgctcagaacattgagagttctcactgcatcaccatgatggaagccatcaataatggaaaggatcttcacgtctctgtaaccatgccttctattgaagttggtacagtaggaggaggtacccaacttgcatcgcagtcggcttgtttgaacttgcttggagtgaagggtgctaacagagaggcaccaggatcaaacgcaaggcaattagctagtgttgtagctggttctgttcttgctggagagctatctctgatgtcagctattgcagcaggacaacttgttaagagccacatgaagtacaatagatcaaacaaagatgtaacaactgttatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

200

Amino Acids

20.45

Weight (kDa)

8.7

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	2 cut(s)	384, 449
AccI	GTMKAC	1 cut(s)	244
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	337, 464
AcoI	YGGCCR	1 cut(s)	257
AfaI	GTAC	3 cut(s)	371, 386, 567
AgsI	TTSAA	5 cut(s)	63, 128, 212, 363, 416
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	5 cut(s)	155, 477, 489, 512, 528
AluI	AGCT	5 cut(s)	155, 477, 489, 512, 528
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	2 cut(s)	100, 344
AlwI	GGATC	2 cut(s)	337, 464
AoxI	GGCC	4 cut(s)	65, 91, 142, 257
ApeKI	GCWGC	2 cut(s)	45, 534
Asp718I	GGTACC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	259
BanI	GGYRCC	2 cut(s)	384, 449
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	32, 546
BccI	CCATC	3 cut(s)	195, 299, 321
BceAI	ACGGC	2 cut(s)	52, 78
BcgI	CGANNNNNNTGC	2 cut(s)	385, 419
BciT130I	CCWGG	1 cut(s)	454
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	100, 344
BfaI	CTAG	1 cut(s)	478
BfmI	CTRYAG	2 cut(s)	79, 238
BisI	GCNGC	3 cut(s)	46, 142, 535
BlsI	GCNGC	3 cut(s)	47, 143, 536
Bme1390I	CCNGG	1 cut(s)	454
BmgBI	CACGTC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	386, 451
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	2 cut(s)	304, 405
BpmI	CTGGAG	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	68, 145
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bse1I	ACTGG	4 cut(s)	60, 182, 223, 260
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	68, 145
BseMII	CTCAG	2 cut(s)	43, 285
BseNI	ACTGG	4 cut(s)	60, 182, 223, 260
BseRI	GAGGAG	1 cut(s)	394
BseXI	GCAGC	2 cut(s)	32, 546
BshFI	GGCC	4 cut(s)	67, 93, 144, 259
BshNI	GGYRCC	2 cut(s)	384, 449
BsiHKAI	GWGCWC	1 cut(s)	200
BsmAI	GTCTC	2 cut(s)	100, 344
BsmBI	CGTCTC	1 cut(s)	344
BsnI	GGCC	4 cut(s)	67, 93, 144, 259
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	4 cut(s)	97, 329, 456, 573
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	4 cut(s)	67, 93, 144, 259
BspCNI	CTCAG	2 cut(s)	42, 284
BspLI	GGNNCC	2 cut(s)	386, 451
BspMAI	CTGCAG	1 cut(s)	242
BspPI	GGATC	2 cut(s)	337, 464
BspT107I	GGYRCC	2 cut(s)	384, 449
BsrI	ACTGG	4 cut(s)	60, 182, 223, 260
BssECI	CCNNGG	2 cut(s)	68, 145
BssMI	GATC	4 cut(s)	97, 329, 456, 573
BssT1I	CCWWGG	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	2 cut(s)	374, 596
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	29, 271
BstDSI	CCRYGG	1 cut(s)	68
BstKTI	GATC	4 cut(s)	100, 332, 459, 576
BstMAI	GTCTC	2 cut(s)	100, 344
BstMBI	GATC	4 cut(s)	97, 329, 456, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 534
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	2 cut(s)	79, 238
BstV1I	GCAGC	2 cut(s)	32, 546
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	67, 93, 144, 259
BtgI	CCRYGG	1 cut(s)	68
BtgZI	GCGATG	2 cut(s)	173, 382
BtrI	CACGTC	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	43
Csp6I	GTAC	3 cut(s)	370, 385, 566
CviAII	CATG	5 cut(s)	161, 219, 302, 350, 560
CviQI	GTAC	3 cut(s)	370, 385, 566
DdeI	CTNAG	2 cut(s)	29, 271
DpnI	GATC	4 cut(s)	99, 331, 458, 575
DpnII	GATC	4 cut(s)	97, 329, 456, 573
EaeI	YGGCCR	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	5 cut(s)	164, 222, 305, 353, 563
FaiI	YATR	6 cut(s)	111, 162, 220, 303, 351, 561
FatI	CATG	5 cut(s)	160, 218, 301, 349, 559
FbaI	TGATCA	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	46, 142, 535
Fsp4HI	GCNGC	3 cut(s)	46, 142, 535
FspBI	CTAG	1 cut(s)	478
GluI	GCNGC	3 cut(s)	46, 142, 535
GsuI	CTGGAG	1 cut(s)	526
HaeIII	GGCC	4 cut(s)	67, 93, 144, 259
Hin1II	CATG	5 cut(s)	164, 222, 305, 353, 563
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HpaI	GTTAAC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	53, 245
Hpy188I	TCNGA	3 cut(s)	32, 274, 520
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	53, 245
HpyAV	CCTTC	4 cut(s)	57, 113, 364, 425
HpyCH4III	ACNGT	2 cut(s)	374, 596
HpyCH4IV	ACGT	2 cut(s)	136, 337
HpyCH4V	TGCA	5 cut(s)	240, 252, 295, 396, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 534
HpyF3I	CTNAG	2 cut(s)	29, 271
HpySE526I	ACGT	2 cut(s)	136, 337
Hsp92II	CATG	5 cut(s)	164, 222, 305, 353, 563
KpnI	GGTACC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	53
Kzo9I	GATC	4 cut(s)	97, 329, 456, 573
LmnI	GCTCC	1 cut(s)	152
Lsp1109I	GCAGC	2 cut(s)	32, 546
LweI	GCATC	2 cut(s)	304, 405
MaeI	CTAG	1 cut(s)	478
MaeII	ACGT	2 cut(s)	136, 337
MaeIII	GTNAC	5 cut(s)	18, 113, 225, 344, 587
MalI	GATC	4 cut(s)	99, 331, 458, 575
MboI	GATC	4 cut(s)	97, 329, 456, 573
MboII	GAAGA	1 cut(s)	324
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	200
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	1 cut(s)	471
MluNI	TGGCCA	1 cut(s)	259
MnlI	CCTC	4 cut(s)	83, 372, 375, 440
Mox20I	TGGCCA	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	259
MseI	TTAA	3 cut(s)	52, 157, 550
MslI	CAYNNNNRTG	2 cut(s)	300, 303
Msp20I	TGGCCA	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	2 cut(s)	161, 534
NdeII	GATC	4 cut(s)	97, 329, 456, 573
NlaIII	CATG	5 cut(s)	164, 222, 305, 353, 563
NlaIV	GGNNCC	2 cut(s)	386, 451
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	47, 143, 536
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	386, 451
PstI	CTGCAG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	3 cut(s)	371, 386, 567
RsaNI	GTAC	3 cut(s)	370, 385, 566
RseI	CAYNNNNRTG	2 cut(s)	300, 303
SaqAI	TTAA	3 cut(s)	52, 157, 550
SatI	GCNGC	3 cut(s)	46, 142, 535
Sau3AI	GATC	4 cut(s)	97, 329, 456, 573
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	200
SfaNI	GCATC	2 cut(s)	304, 405
SfcI	CTRYAG	2 cut(s)	79, 238
SmiMI	CAYNNNNRTG	2 cut(s)	300, 303
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	471
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	374, 596
TaiI	ACGT	2 cut(s)	139, 340
TasI	AATT	1 cut(s)	471
TatI	WGTACW	1 cut(s)	565
TauI	GCSGC	1 cut(s)	144
Tru1I	TTAA	3 cut(s)	52, 157, 550
Tru9I	TTAA	3 cut(s)	52, 157, 550
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	45, 534
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	576
TspRI	CASTG	1 cut(s)	297
XceI	RCATGY	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.