Rorug06G0140800

A reductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
19912880 .. 19914132
1253 bp
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UTR
Exon/CDS
Intron
Rorug06G0140800.1

Sequence Viewer

Length: 309 bp
ATGGTCGTCATTGCTGTCATTGTTGCTTTTAACTTGGCAAGACTGCATGATGTACTAGGATTGAACTGGTTTGGACCAGCAGATTGTCCTTCCCCTGGACTCCTACCTCCAGGTCTCCCTTTGTTTTCTGGAATCTTCTTACCTTATACTCGATTACAACTACAGATATCAAGACTCGATCAAGAGCATCTTTATACCAGAATGAACCTATATTCTCAGTCGGCTGCCTTTTGGCTTGGTGATTTTCTCGTGTGTATGGATATTCCCGAGGCTTTTGGTTGCGGTGGGAATTATTTAAATGGTTCCTAG

Protein Analysis

102

Amino Acids

11.25

Weight (kDa)

4.91

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17370
fragaria_vesca FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica Prupe.8G182300_v2.0.a1
pyrus_communis pycom05g13820 pycom10g12350
rosa_chinensis RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 282
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 2 cut(s) 94, 109
Alw26I GTCTC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 74
BauI CACGAG 1 cut(s) 248
BbvI GCAGC 1 cut(s) 211
BciT130I CCWGG 2 cut(s) 96, 111
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 56, 307
BfmI CTRYAG 1 cut(s) 161
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 2 cut(s) 96, 111
Bme18I GGWCC 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 96, 111
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 94, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 9
BseBI CCWGG 2 cut(s) 96, 111
BseDI CCNNGG 2 cut(s) 94, 267
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 9
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 266
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 9
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 94, 267
BssMI GATC 1 cut(s) 178
BssSI CACGAG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 2 cut(s) 96, 111
BstDEI CTNAG 1 cut(s) 216
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 178
BstNI CCWGG 2 cut(s) 96, 111
BstSCI CCNGG 2 cut(s) 94, 109
BstSFI CTRYAG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 53
CviAII CATG 1 cut(s) 47
CviJI RGCY 3 cut(s) 224, 235, 272
CviKI_1 RGCY 3 cut(s) 224, 235, 272
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DraI TTTAAA 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 119
Eco32I GATATC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 94, 109
EcoRV GATATC 1 cut(s) 168
FaeI CATG 1 cut(s) 50
FaiI YATR 5 cut(s) 48, 147, 195, 211, 257
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 2 cut(s) 56, 307
GluI GCNGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 93
Hin1II CATG 1 cut(s) 50
HinfI GANTC 3 cut(s) 99, 132, 174
HphI GGTGA 1 cut(s) 251
Hpy188III TCNNGA 4 cut(s) 129, 171, 182, 266
HpyAV CCTTC 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 8 cut(s) 52, 81, 90, 96, 108, 114, 123, 211
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 56, 307
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 127
MluCI AATT 1 cut(s) 289
MlyI GAGTC 2 cut(s) 93, 168
MnlI CCTC 2 cut(s) 117, 262
MseI TTAA 2 cut(s) 30, 296
MspR9I CCNGG 2 cut(s) 96, 111
MvaI CCWGG 2 cut(s) 96, 111
NdeII GATC 1 cut(s) 178
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 2 cut(s) 93, 168
PpsI GAGTC 2 cut(s) 93, 168
Psp6I CCWGG 2 cut(s) 94, 109
PspGI CCWGG 2 cut(s) 94, 109
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 74
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SaqAI TTAA 2 cut(s) 30, 296
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 2 cut(s) 93, 168
ScrFI CCNGG 2 cut(s) 96, 111
SetI ASST 4 cut(s) 109, 115, 145, 210
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 161
SinI GGWCC 1 cut(s) 74
SmiI ATTTAAAT 1 cut(s) 297
Sse9I AATT 1 cut(s) 289
SsiI CCGC 1 cut(s) 282
SspMI CTAG 2 cut(s) 56, 307
StyD4I CCNGG 2 cut(s) 94, 109
SwaI ATTTAAAT 1 cut(s) 297
TaqI TCGA 2 cut(s) 151, 177
TasI AATT 1 cut(s) 289
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 2 cut(s) 30, 296
Tru9I TTAA 2 cut(s) 30, 296
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 74
XspI CTAG 2 cut(s) 56, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.