Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Reverse (-)

19968426 .. 19969274

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTATGGGATTCCGGAGGACTTTGTGTCTAAATATGGAAAAGATCTATCAAATTCAGTGACTTTTAGGCTTCCATGTGGTTCAGAATGGGAAGTAGGATTGACAAGGTACAATGGTGAGGTTTGGTTTAAGAAGGGTTGGCCAGACTTCTCGAAGCTTTACTCTCTTGGCTACAATGACCTGCTGGTTTTCGGATATGAAGGGAAGTCTAGATTTCAGGTTTCCATATTTGATAAAAGCACAATTGAGATCGAGTATCCCATTAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

90

Amino Acids

10.47

Weight (kDa)

5.36

Isoelectric Point (pI)

15.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	3 - 79	1.3e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	110
AhdI	GACNNNNNGTC	1 cut(s)	25
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	128
BaeI	ACNNNNGTAYC	2 cut(s)	100, 133
BalI	TGGCCA	1 cut(s)	142
BciVI	GTATCC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	13
BseAI	TCCGGA	1 cut(s)	13
BshFI	GGCC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	142
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	43, 249
BspANI	GGCC	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	189
BssMI	GATC	2 cut(s)	43, 249
BstKTI	GATC	2 cut(s)	46, 252
BstMBI	GATC	2 cut(s)	43, 249
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	4 cut(s)	70, 142, 157, 171
CviKI_1	RGCY	4 cut(s)	70, 142, 157, 171
CviQI	GTAC	1 cut(s)	109
DpnI	GATC	2 cut(s)	45, 251
DpnII	GATC	2 cut(s)	43, 249
DriI	GACNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	140
Eam1105I	GACNNNNNGTC	1 cut(s)	25
FaeI	CATG	1 cut(s)	78
FaiI	YATR	5 cut(s)	6, 36, 76, 198, 227
FatI	CATG	1 cut(s)	74
FspBI	CTAG	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	14
Hin1II	CATG	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	85, 194
Hpy188III	TCNNGA	3 cut(s)	14, 151, 210
HpyAV	CCTTC	2 cut(s)	127, 194
Hsp92II	CATG	1 cut(s)	78
Kpn2I	TCCGGA	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	43, 249
LpnPI	CCDG	5 cut(s)	27, 156, 170, 194, 203
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	45, 251
MboI	GATC	2 cut(s)	43, 249
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	142
MluCI	AATT	2 cut(s)	52, 243
MluNI	TGGCCA	1 cut(s)	142
MnlI	CCTC	2 cut(s)	10, 112
Mox20I	TGGCCA	1 cut(s)	142
MroI	TCCGGA	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	142
MseI	TTAA	2 cut(s)	129, 264
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	142
MspI	CCGG	1 cut(s)	14
MunI	CAATTG	1 cut(s)	243
NdeII	GATC	2 cut(s)	43, 249
NlaIII	CATG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	129, 264
Sau3AI	GATC	2 cut(s)	43, 249
SetI	ASST	5 cut(s)	110, 123, 159, 183, 222
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	52, 243
SspMI	CTAG	1 cut(s)	210
TaqI	TCGA	2 cut(s)	152, 252
TasI	AATT	2 cut(s)	52, 243
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	129, 264
Tru9I	TTAA	2 cut(s)	129, 264
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	52
XbaI	TCTAGA	1 cut(s)	209
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.