Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Forward (+)

19909674 .. 19911935

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0140700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGCGCGTTCCAAGCAGTACCAACCTCTGTAATTGGCATTTGAAGCTCAAAGACTTATCATCCAATGGAAAATGGGTAGAATTACTCTGCCACTACCATCAAGTAAACAAAGCTGGACTTCACCCAACACACTATTCAGTCTTCCCTCCAATTCTCAAAGCATGTTCAAACCTGCTTTCCTACTCCTATGGAAAATCTATACATGGGTGGTTGATCAAAACTGGGTGTGATTCATGCACTTCCATTGCTAACTCCACCATGGACTTCTACATCAAAACCAGGGACCCAGATTCTGCATTGGGTGTTTTTAACTCTGTGAGGTGGAGAGATCAAGTTTCTTGGAATATTATGGTTTATGGGAGCCTTGATCTGGGGAATTTAGAACAAGGGTTATGGTGGTTTAACAAGGCCAGGGTTTCGGTTTGTGGGTTTCAACCCAATACTTCTACTCTGGTGCTTGTGATTCAAGCCTGTCGTCGGCTTAGAGATAAATATGAAGGACTGAAAGTACATGGTTACGTGATTCGAGGCGGGTTTTGTTATATATCTTCAGTTCAGAACTCATTGTTGAGTCTGTATGCAGAAGATGATGACATGGAGAGTGCGCACAAGCTGTTCGACGAAATGTCTGAGAGAGATGTCATCTCTTGGAGTGTGATGATAGGAGGTCATGTGCATTGCGTGGAAGCTGAAATCGGCATGAAGATGTTCCGAAAGATGGTATGTGAGCTTGGAGTTGAACCAGATGGCGTAACTGCGGTCAGTGTTCTTAAAGGGTGCGCTAGTTTGAGGGACTTGACCATGGGAACATCGCTTCATGGGTTGGTAATCTATAGAGGGTTAGATTCTGATCTGTTTGTTGGAAACTCTTTAATTGATATGTATGCCAAGTGTAGTGATGCGGATTCTGCCTTTAAAGTTTTTGAGGAGTTGCCGCAAAGAAATAGGGTCTCATGGAATTCTATGTTGTCTGCATTTGTCCATAATGAGAGGTACATGGATGCCCTGTCACTGTTTTATTCTATGGGGAAGGAAGGTATCAACGCAGATGAAGTGACTCTGGTGAATATTCTTCAAATATGCAAGCATTTGCGCCTAGTTGATTGCAAGTCGGTGCACTGTGTAACAATCAGGTGGGGATTTGAATCAAATGAGTTGCTCCTAAATTCGCTCATTGATGCTTATGCAAAGTGCAATTGTATCGAGCTTGCATGGAAACTTTTTGATAGGATGAAGAAAAGAGATGTGGTTTCGTGGAGCACTATGATTGCAGGGTTTACGCATTGTGGCAGACCTGATCAAGCAATTGCTGTCTTCGGTGAGATGACAAGGCTGCAGGTGCAGGATGATCAGAAGCCCAATGAGATTACACTCATAAATCTTTTGGAAGCTTGTTCAGTTTCAGCTGAATTGAAATGGGCCAAAGGGGCACATGGAATTGCTATTCGAAGAGGTTTGTCAACTGCAGATCAAGTAGCCGTCGGAACTGCAACTGTTGACATGTACTCGAAATGCGGGGCAATAGGAGAATCAAGAAAGGTGTTCGACCAGATTTCCGAAAAAAACATTGTGTCATGGAGTGCCATGATAGCTGCATATGGCATGAATGGTCTTGCACATGAAGCTCTAGCTTTGGTTGAGGAAATGAAGCTGTATGGTGCAAAGCCAAATGCAGTGACCACCCTTTCTATGCTATCTGCCTGCAGCCATGGAGGCTTAGTTGAAGAAGGGCTCTCCTTGTTCAACTCACTTGTTCAAGTTTATGGAATTGAACCAAGATTGGAACATTATGCATGTGTAGTTGACATGTTGGGCCGAGCAGGAAAGCTCCATATGGCTATGGATTTTATCAAGAACATTCCAGAAGGTTTAAAGGTCACTGGGGAAAATGCTGCTTGGAGTGCATTATTGAGTGCTTGTAGAAGCTATGGCAATAGTGACGTTGGCGCAGTAGCTGCTTCTCATGTCCTTGAGTTAGAGCCTGAAAGTTCAACTGGGTATTTACTTGCCTCAAGTATTTATGCAGCAGGTGGGTTGTGGGTTGATGCTGCAAGTATTAGAAGAATGGTGAAAGAAAAAGAGGTGAAGGTTGTTGCTGGTTATAGCTTAGTTTATGTTGATAACAAGGCATGTAGATTTGTTGCTGGGGATATTGATTGCCATTCACTAGCTGCTGGAGAGATGCACTCTACAGTTGAGCTGTTGCATGCTTGTATGAAGACTGAAAAGAGAAATGCTGGTAATTTTGATATAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

753

Amino Acids

83.18

Weight (kDa)

6.19

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	315 - 356	7.1e-07	PPR repeat family
PPR	PF01535	317 - 347	7e-06	PPR repeat
PPR_2	PF13041	388 - 416	4.2e-06	PPR repeat family
PPR	PF01535	389 - 415	3.4e-06	PPR repeat
PPR_2	PF13041	414 - 465	1.1e-06	PPR repeat family
PPR	PF01535	417 - 445	9.1e-06	PPR repeat
PPR_2	PF13041	521 - 569	1.5e-09	PPR repeat family
PPR	PF01535	524 - 553	5.2e-06	PPR repeat
E_motif	PF20431	643 - 704	3.8e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1327, 2018
Acc16I	TGCGCA	1 cut(s)	606
Acc36I	ACCTGC	3 cut(s)	180, 1327, 2018
AccII	CGCG	1 cut(s)	6
AciI	CCGC	5 cut(s)	531, 758, 902, 935, 1515
AcsI	RAATTY	3 cut(s)	376, 958, 1165
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	4 cut(s)	19, 510, 995, 1505
AfiI	CCNNNNNNNGG	3 cut(s)	370, 477, 718
AflIII	ACRYGT	2 cut(s)	1500, 1806
AhdI	GACNNNNNGTC	1 cut(s)	625
AjnI	CCWGG	2 cut(s)	278, 410
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
Alw21I	GWGCWC	2 cut(s)	1119, 1262
Alw26I	GTCTC	1 cut(s)	955
Alw44I	GTGCAC	1 cut(s)	1115
AlwNI	CAGNNNCTG	2 cut(s)	293, 1955
AoxI	GGCC	3 cut(s)	408, 1419, 1813
ApaLI	GTGCAC	1 cut(s)	1115
ApeKI	GCWGC	8 cut(s)	1333, 1592, 1704, 1892, 1955, 2024, 2048, 2171
ApoI	RAATTY	3 cut(s)	376, 958, 1165
Asp700I	GAANNNNTTC	1 cut(s)	707
AspLEI	GCGC	5 cut(s)	6, 607, 782, 1095, 1949
AspS9I	GGNCC	3 cut(s)	283, 1419, 1813
AsuHPI	GGTGA	5 cut(s)	113, 1075, 1331, 2080, 2095
AsuII	TTCGAA	1 cut(s)	1447
AvaII	GGWCC	1 cut(s)	283
BaeGI	GKGCMC	2 cut(s)	1119, 1432
BanII	GRGCYC	1 cut(s)	1734
BbsI	GAAGAC	3 cut(s)	133, 1306, 2225
Bbv12I	GWGCWC	2 cut(s)	1119, 1262
BbvI	GCAGC	8 cut(s)	1320, 1579, 1716, 1879, 1942, 2035, 2036, 2158
BccI	CCATC	3 cut(s)	105, 712, 740
BceAI	ACGGC	1 cut(s)	1463
BcgI	CGANNNNNNTGC	2 cut(s)	1183, 1217
BciT130I	CCWGG	2 cut(s)	280, 412
BclI	TGATCA	3 cut(s)	213, 1297, 1348
BcoDI	GTCTC	1 cut(s)	955
BfaI	CTAG	4 cut(s)	783, 1097, 1628, 2168
BfmI	CTRYAG	5 cut(s)	832, 1334, 1464, 1702, 2190
BfuAI	ACCTGC	3 cut(s)	180, 1327, 2018
BglI	GCCNNNNNGGC	2 cut(s)	1427, 1713
BisI	GCNGC	9 cut(s)	935, 1334, 1593, 1705, 1893, 1956, 2025, 2049, 2172
BlsI	GCNGC	9 cut(s)	936, 1335, 1594, 1706, 1894, 1957, 2026, 2050, 2173
Bme1390I	CCNGG	2 cut(s)	280, 412
Bme18I	GGWCC	1 cut(s)	283
BmeRI	GACNNNNNGTC	1 cut(s)	625
BmgT120I	GGNCC	3 cut(s)	283, 1419, 1813
BmiI	GGNNCC	3 cut(s)	284, 285, 362
BmrFI	CCNGG	2 cut(s)	280, 412
BmrI	ACTGGG	3 cut(s)	231, 1890, 2004
BmsI	GCATC	5 cut(s)	889, 991, 1168, 2035, 2172
BmuI	ACTGGG	3 cut(s)	231, 1890, 2004
BpiI	GAAGAC	3 cut(s)	133, 1306, 2225
BplI	GAGNNNNNCTC	2 cut(s)	2171, 2203
BpmI	CTGGAG	1 cut(s)	2196
Bpu14I	TTCGAA	1 cut(s)	1447
BpuEI	CTTGAG	2 cut(s)	1991, 1996
BsaAI	YACGTR	1 cut(s)	520
BsaBI	GATNNNNATC	2 cut(s)	849, 1144
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	5 cut(s)	258, 279, 411, 801, 1708
BsaXI	ACNNNNNCTCC	4 cut(s)	657, 687, 1704, 1734
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 477, 718
Bse1I	ACTGG	3 cut(s)	226, 1885, 1999
Bse3DI	GCAATG	2 cut(s)	243, 676
Bse8I	GATNNNNATC	2 cut(s)	849, 1144
BseBI	CCWGG	2 cut(s)	280, 412
BseDI	CCNNGG	5 cut(s)	258, 279, 411, 801, 1708
BseGI	GGATG	4 cut(s)	59, 1006, 1236, 1351
BseJI	GATNNNNATC	2 cut(s)	849, 1144
BseLI	CCNNNNNNNGG	3 cut(s)	370, 477, 718
BseMI	GCAATG	2 cut(s)	243, 676
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	3 cut(s)	226, 1885, 1999
BseRI	GAGGAG	1 cut(s)	941
BseSI	GKGCMC	2 cut(s)	1119, 1432
BseXI	GCAGC	8 cut(s)	1320, 1579, 1716, 1879, 1942, 2035, 2036, 2158
BseYI	CCCAGC	1 cut(s)	2144
BsgI	GTGCAG	1 cut(s)	1361
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	3 cut(s)	410, 1421, 1815
BsiHKAI	GWGCWC	2 cut(s)	1119, 1262
BslFI	GGGAC	2 cut(s)	296, 806
BslI	CCNNNNNNNGG	3 cut(s)	370, 477, 718
BsmAI	GTCTC	1 cut(s)	955
BsmFI	GGGAC	2 cut(s)	296, 806
BsnI	GGCC	3 cut(s)	410, 1421, 1815
Bso31I	GGTCTC	1 cut(s)	955
Bsp119I	TTCGAA	1 cut(s)	1447
Bsp1286I	GDGCHC	4 cut(s)	1119, 1262, 1432, 1734
Bsp143I	GATC	7 cut(s)	213, 328, 367, 850, 1297, 1348, 1468
Bsp19I	CCATGG	3 cut(s)	258, 801, 1708
BspACI	CCGC	5 cut(s)	531, 758, 902, 935, 1515
BspANI	GGCC	3 cut(s)	410, 1421, 1815
BspCNI	CTCAG	1 cut(s)	622
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	284, 285, 362
BspMAI	CTGCAG	3 cut(s)	1338, 1468, 1706
BspMI	ACCTGC	3 cut(s)	180, 1327, 2018
BspT104I	TTCGAA	1 cut(s)	1447
BspTNI	GGTCTC	1 cut(s)	955
BsrDI	GCAATG	2 cut(s)	243, 676
BsrI	ACTGG	3 cut(s)	226, 1885, 1999
BssECI	CCNNGG	5 cut(s)	258, 279, 411, 801, 1708
BssMI	GATC	7 cut(s)	213, 328, 367, 850, 1297, 1348, 1468
BssT1I	CCWWGG	3 cut(s)	258, 801, 1708
Bst2UI	CCWGG	2 cut(s)	280, 412
Bst4CI	ACNGT	4 cut(s)	1014, 1121, 1495, 2194
Bst6I	CTCTTC	1 cut(s)	1444
BstAPI	GCANNNNNTGC	1 cut(s)	1955
BstBAI	YACGTR	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	1447
BstC8I	GCNNGC	4 cut(s)	1085, 1209, 1702, 2208
BstDEI	CTNAG	4 cut(s)	482, 630, 1717, 2107
BstDSI	CCRYGG	3 cut(s)	258, 801, 1708
BstF5I	GGATG	4 cut(s)	59, 1006, 1236, 1351
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	5 cut(s)	6, 607, 782, 1095, 1949
BstKTI	GATC	7 cut(s)	216, 331, 370, 853, 1300, 1351, 1471
BstMAI	GTCTC	1 cut(s)	955
BstMBI	GATC	7 cut(s)	213, 328, 367, 850, 1297, 1348, 1468
BstNI	CCWGG	2 cut(s)	280, 412
BstNSI	RCATGY	6 cut(s)	165, 1504, 1797, 1810, 2133, 2210
BstSCI	CCNGG	2 cut(s)	278, 410
BstSFI	CTRYAG	5 cut(s)	832, 1334, 1464, 1702, 2190
BstSLI	GKGCMC	2 cut(s)	1119, 1432
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	8 cut(s)	1320, 1579, 1716, 1879, 1942, 2035, 2036, 2158
BstV2I	GAAGAC	3 cut(s)	133, 1306, 2225
BsuRI	GGCC	3 cut(s)	410, 1421, 1815
BtgI	CCRYGG	3 cut(s)	258, 801, 1708
BtgZI	GCGATG	1 cut(s)	795
BtsCI	GGATG	4 cut(s)	59, 1006, 1236, 1351
BtsI	GCAGTG	1 cut(s)	1680
BtsIMutI	CAGTG	5 cut(s)	769, 1010, 1117, 1680, 1878
BveI	ACCTGC	3 cut(s)	180, 1327, 2018
Cac8I	GCNNGC	4 cut(s)	1085, 1209, 1702, 2208
CaiI	CAGNNNCTG	2 cut(s)	293, 1955
CfoI	GCGC	5 cut(s)	6, 607, 782, 1095, 1949
Cfr13I	GGNCC	3 cut(s)	283, 1419, 1813
Csp6I	GTAC	4 cut(s)	18, 509, 994, 1504
CviQI	GTAC	4 cut(s)	18, 509, 994, 1504
DdeI	CTNAG	4 cut(s)	482, 630, 1717, 2107
DpnI	GATC	7 cut(s)	215, 330, 369, 852, 1299, 1350, 1470
DpnII	GATC	7 cut(s)	213, 328, 367, 850, 1297, 1348, 1468
DraI	TTTAAA	2 cut(s)	916, 1872
DriI	GACNNNNNGTC	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	1444
Eam1105I	GACNNNNNGTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	1444
Eco130I	CCWWGG	3 cut(s)	258, 801, 1708
Eco24I	GRGCYC	1 cut(s)	1734
Eco31I	GGTCTC	1 cut(s)	955
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	958
EcoRII	CCWGG	2 cut(s)	278, 410
EcoT14I	CCWWGG	3 cut(s)	258, 801, 1708
EcoT22I	ATGCAT	1 cut(s)	1795
EcoT38I	GRGCYC	1 cut(s)	1734
ErhI	CCWWGG	3 cut(s)	258, 801, 1708
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	2 cut(s)	296, 806
FauI	CCCGC	2 cut(s)	524, 1508
FauNDI	CATATG	2 cut(s)	1597, 1833
FbaI	TGATCA	3 cut(s)	213, 1297, 1348
Fnu4HI	GCNGC	9 cut(s)	935, 1334, 1593, 1705, 1893, 1956, 2025, 2049, 2172
FokI	GGATG	4 cut(s)	46, 1013, 1243, 1358
FriOI	GRGCYC	1 cut(s)	1734
Fsp4HI	GCNGC	9 cut(s)	935, 1334, 1593, 1705, 1893, 1956, 2025, 2049, 2172
FspAI	RTGCGCAY	1 cut(s)	606
FspBI	CTAG	4 cut(s)	783, 1097, 1628, 2168
FspI	TGCGCA	1 cut(s)	606
GlaI	GCGC	5 cut(s)	5, 606, 781, 1094, 1948
GluI	GCNGC	9 cut(s)	935, 1334, 1593, 1705, 1893, 1956, 2025, 2049, 2172
GsaI	CCCAGC	1 cut(s)	2148
GsuI	CTGGAG	1 cut(s)	2196
HaeIII	GGCC	3 cut(s)	410, 1421, 1815
HhaI	GCGC	5 cut(s)	6, 607, 782, 1095, 1949
Hin6I	GCGC	5 cut(s)	4, 605, 780, 1093, 1947
HinP1I	GCGC	5 cut(s)	4, 605, 780, 1093, 1947
HincII	GTYRAC	3 cut(s)	1461, 1498, 1804
HindII	GTYRAC	3 cut(s)	1461, 1498, 1804
HindIII	AAGCTT	1 cut(s)	1389
HphI	GGTGA	5 cut(s)	113, 1075, 1331, 2080, 2095
Hpy166II	GTNNAC	6 cut(s)	106, 1117, 1278, 1461, 1498, 1804
Hpy188I	TCNGA	7 cut(s)	558, 631, 713, 850, 1353, 1484, 1558
Hpy188III	TCNNGA	3 cut(s)	1533, 1852, 1862
Hpy8I	GTNNAC	6 cut(s)	106, 1117, 1278, 1461, 1498, 1804
Hpy99I	CGWCG	3 cut(s)	480, 623, 1484
HpyAV	CCTTC	6 cut(s)	491, 1024, 1028, 1721, 1859, 2080
HpyCH4III	ACNGT	4 cut(s)	1014, 1121, 1495, 2194
HpyCH4IV	ACGT	2 cut(s)	519, 1941
HpyF3I	CTNAG	4 cut(s)	482, 630, 1717, 2107
HpySE526I	ACGT	2 cut(s)	519, 1941
HspAI	GCGC	5 cut(s)	4, 605, 780, 1093, 1947
KflI	GGGWCCC	1 cut(s)	283
Ksp22I	TGATCA	3 cut(s)	213, 1297, 1348
Kzo9I	GATC	7 cut(s)	213, 328, 367, 850, 1297, 1348, 1468
LmnI	GCTCC	4 cut(s)	360, 1164, 1257, 1833
Lsp1109I	GCAGC	8 cut(s)	1320, 1579, 1716, 1879, 1942, 2035, 2036, 2158
LweI	GCATC	5 cut(s)	889, 991, 1168, 2035, 2172
MaeI	CTAG	4 cut(s)	783, 1097, 1628, 2168
MaeII	ACGT	2 cut(s)	519, 1941
MaeIII	GTNAC	8 cut(s)	515, 751, 1008, 1054, 1123, 1675, 1876, 1937
MalI	GATC	7 cut(s)	215, 330, 369, 852, 1299, 1350, 1470
MboI	GATC	7 cut(s)	213, 328, 367, 850, 1297, 1348, 1468
MfeI	CAATTG	2 cut(s)	1195, 1305
MhlI	GDGCHC	4 cut(s)	1119, 1262, 1432, 1734
MlyI	GAGTC	2 cut(s)	580, 1051
MmeI	TCCRAC	2 cut(s)	841, 1462
Mph1103I	ATGCAT	1 cut(s)	1795
MroXI	GAANNNNTTC	1 cut(s)	707
MseI	TTAA	6 cut(s)	309, 402, 771, 872, 915, 1871
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	1406
MspR9I	CCNGG	2 cut(s)	280, 412
MunI	CAATTG	2 cut(s)	1195, 1305
MvaI	CCWGG	2 cut(s)	280, 412
MvnI	CGCG	1 cut(s)	6
NcoI	CCATGG	3 cut(s)	258, 801, 1708
NdeI	CATATG	2 cut(s)	1597, 1833
NdeII	GATC	7 cut(s)	213, 328, 367, 850, 1297, 1348, 1468
NlaIV	GGNNCC	3 cut(s)	284, 285, 362
NmeAIII	GCCGAG	1 cut(s)	1841
NmuCI	GTSAC	5 cut(s)	1008, 1054, 1675, 1876, 1937
NsbI	TGCGCA	1 cut(s)	606
NsiI	ATGCAT	1 cut(s)	1795
NspI	RCATGY	6 cut(s)	165, 1504, 1797, 1810, 2133, 2210
NspV	TTCGAA	1 cut(s)	1447
PaeI	GCATGC	1 cut(s)	2210
PaqCI	CACCTGC	2 cut(s)	1327, 2018
PciI	ACATGT	2 cut(s)	1500, 1806
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	8 cut(s)	230, 290, 463, 523, 845, 905, 1145, 1529
PkrI	GCNGC	9 cut(s)	936, 1335, 1594, 1706, 1894, 1957, 2026, 2050, 2173
PleI	GAGTC	2 cut(s)	579, 1051
PpsI	GAGTC	2 cut(s)	579, 1051
Ppu21I	YACGTR	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	283
PscI	ACATGT	2 cut(s)	1500, 1806
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	278, 410
PspFI	CCCAGC	1 cut(s)	2144
PspGI	CCWGG	2 cut(s)	278, 410
PspN4I	GGNNCC	3 cut(s)	284, 285, 362
PspPI	GGNCC	3 cut(s)	283, 1419, 1813
PspPPI	RGGWCCY	1 cut(s)	283
PstI	CTGCAG	3 cut(s)	1338, 1468, 1706
PstNI	CAGNNNCTG	2 cut(s)	293, 1955
PvuII	CAGCTG	1 cut(s)	1406
RsaI	GTAC	4 cut(s)	19, 510, 995, 1505
RsaNI	GTAC	4 cut(s)	18, 509, 994, 1504
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	6 cut(s)	309, 402, 771, 872, 915, 1871
SatI	GCNGC	9 cut(s)	935, 1334, 1593, 1705, 1893, 1956, 2025, 2049, 2172
Sau3AI	GATC	7 cut(s)	213, 328, 367, 850, 1297, 1348, 1468
Sau96I	GGNCC	3 cut(s)	283, 1419, 1813
SchI	GAGTC	2 cut(s)	580, 1051
ScrFI	CCNGG	2 cut(s)	280, 412
SduI	GDGCHC	4 cut(s)	1119, 1262, 1432, 1734
SfaNI	GCATC	5 cut(s)	889, 991, 1168, 2035, 2172
SfcI	CTRYAG	5 cut(s)	832, 1334, 1464, 1702, 2190
SfuI	TTCGAA	1 cut(s)	1447
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	1970, 2011
SmoI	CTYRAG	2 cut(s)	1970, 2011
SphI	GCATGC	1 cut(s)	2210
SsiI	CCGC	5 cut(s)	531, 758, 902, 935, 1515
SspI	AATATT	2 cut(s)	346, 1069
SspMI	CTAG	4 cut(s)	783, 1097, 1628, 2168
StyD4I	CCNGG	2 cut(s)	278, 410
StyI	CCWWGG	3 cut(s)	258, 801, 1708
TaaI	ACNGT	4 cut(s)	1014, 1121, 1495, 2194
TaiI	ACGT	2 cut(s)	522, 1944
TaqI	TCGA	6 cut(s)	526, 618, 1203, 1447, 1508, 1545
TatI	WGTACW	2 cut(s)	508, 1503
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	8 cut(s)	230, 290, 463, 523, 845, 905, 1145, 1529
Tru1I	TTAA	6 cut(s)	309, 402, 771, 872, 915, 1871
Tru9I	TTAA	6 cut(s)	309, 402, 771, 872, 915, 1871
TscAI	CASTG	5 cut(s)	769, 1017, 1124, 1680, 1885
TseFI	GTSAC	5 cut(s)	1008, 1054, 1675, 1876, 1937
TseI	GCWGC	8 cut(s)	1333, 1592, 1704, 1892, 1955, 2024, 2048, 2171
Tsp45I	GTSAC	5 cut(s)	1008, 1054, 1675, 1876, 1937
TspRI	CASTG	5 cut(s)	769, 1017, 1124, 1680, 1885
VneI	GTGCAC	1 cut(s)	1115
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	3 cut(s)	376, 958, 1165
XceI	RCATGY	6 cut(s)	165, 1504, 1797, 1810, 2133, 2210
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	4 cut(s)	783, 1097, 1628, 2168
Zsp2I	ATGCAT	1 cut(s)	1795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.