Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Reverse (-)

44671451 .. 44672099

Gene Structure 649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTCAAGAACCTTACTGGTTCCGCCATTGCTGGTGCTCTTGGTGGTTTCAATGCACATGCCAGTAACATTGTTTCAGCTGTGTACCTCGCCACTGGTCAAGACCCAGCTCAGAACATAGAGAGTTCTCACTGTATCACCATGATGGAAGCCATCAATGATGGCAAGGATCTTCACGTCTCGGTTACCATGCCTTCTATTGAGGTCGGTACAGTAGGAGGAGGTACCCAATTGGCATCGCAGTCGGCTTGCTTGAACTTGCTCGGAGTGAAGGGTGCCAACAGAGAGGCACCAGGATCAAACGCAAGGCAATTGGCCAGTGTTGTAGCTGGTTCTGTTCTTGCCGGAGAGCTTTCTCTCATGTCTGCTATTGCAGCTGGACAGCTCGTCAAGAGTCACATGAAGTATAACCGATCAAACAAAGATGTTACAACTGTTGCTTCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

149

Amino Acids

15.09

Weight (kDa)

6.89

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	3 - 138	6e-52	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	3 cut(s)	224, 275, 289
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	177, 304
AcoI	YGGCCR	1 cut(s)	315
AfaI	GTAC	3 cut(s)	86, 211, 226
AgsI	TTSAA	2 cut(s)	52, 256
AhdI	GACNNNNNGTC	1 cut(s)	386
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	6 cut(s)	80, 110, 329, 352, 377, 385
AluI	AGCT	6 cut(s)	80, 110, 329, 352, 377, 385
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	177, 304
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	374
Asp718I	GGTACC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	317
BanI	GGYRCC	3 cut(s)	224, 275, 289
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	3 cut(s)	139, 155, 161
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	294
BmeRI	GACNNNNNGTC	1 cut(s)	386
BmgBI	CACGTC	1 cut(s)	178
BmiI	GGNNCC	4 cut(s)	22, 226, 277, 291
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	245
Bse1I	ACTGG	4 cut(s)	22, 63, 100, 318
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	4 cut(s)	22, 63, 100, 318
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	386
BseYI	CCCAGC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	317
BshNI	GGYRCC	3 cut(s)	224, 275, 289
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	169, 296, 413
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	4 cut(s)	22, 226, 277, 291
BspPI	GGATC	2 cut(s)	177, 304
BspT107I	GGYRCC	3 cut(s)	224, 275, 289
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	4 cut(s)	22, 63, 100, 318
BssMI	GATC	3 cut(s)	169, 296, 413
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	134, 214, 436
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	172, 299, 416
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	169, 296, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	62
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	317
BtgZI	GCGATG	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	178
BtsIMutI	CAGTG	3 cut(s)	93, 130, 325
Cac8I	GCNNGC	1 cut(s)	250
Csp6I	GTAC	3 cut(s)	85, 210, 225
CviAII	CATG	5 cut(s)	59, 142, 190, 361, 400
CviJI	RGCY	9 cut(s)	80, 110, 152, 248, 317, 329, 352, 377, 385
CviKI_1	RGCY	9 cut(s)	80, 110, 152, 248, 317, 329, 352, 377, 385
CviQI	GTAC	3 cut(s)	85, 210, 225
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	3 cut(s)	171, 298, 415
DpnII	GATC	3 cut(s)	169, 296, 413
DriI	GACNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	315
Eam1105I	GACNNNNNGTC	1 cut(s)	386
EciI	GGCGGA	1 cut(s)	13
Eco91I	GGTNACC	1 cut(s)	184
EcoO65I	GGTNACC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	5 cut(s)	62, 145, 193, 364, 403
FaiI	YATR	7 cut(s)	60, 119, 143, 191, 362, 401, 408
FatI	CATG	5 cut(s)	58, 141, 189, 360, 399
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	375
GsaI	CCCAGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	5 cut(s)	62, 145, 193, 364, 403
HinfI	GANTC	1 cut(s)	394
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	114, 266
Hpy188III	TCNNGA	3 cut(s)	7, 101, 391
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	204, 265
HpyCH4III	ACNGT	3 cut(s)	134, 214, 436
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	56, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	5 cut(s)	62, 145, 193, 364, 403
KpnI	GGTACC	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	169, 296, 413
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	1 cut(s)	245
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	4 cut(s)	65, 184, 395, 427
MalI	GATC	3 cut(s)	171, 298, 415
MboI	GATC	3 cut(s)	169, 296, 413
MboII	GAAGA	1 cut(s)	164
MfeI	CAATTG	2 cut(s)	230, 311
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	2 cut(s)	230, 311
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	5 cut(s)	98, 196, 212, 215, 280
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	1 cut(s)	448
MslI	CAYNNNNRTG	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	317
MspA1I	CMGCKG	2 cut(s)	80, 377
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	2 cut(s)	230, 311
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	3 cut(s)	169, 296, 413
NlaIII	CATG	5 cut(s)	62, 145, 193, 364, 403
NlaIV	GGNNCC	4 cut(s)	22, 226, 277, 291
NmuCI	GTSAC	1 cut(s)	395
NspI	RCATGY	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	4 cut(s)	22, 226, 277, 291
PsuI	RGATCY	1 cut(s)	169
PvuII	CAGCTG	2 cut(s)	80, 377
RsaI	GTAC	3 cut(s)	86, 211, 226
RsaNI	GTAC	3 cut(s)	85, 210, 225
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	3 cut(s)	169, 296, 413
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	2 cut(s)	230, 311
SsiI	CCGC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	3 cut(s)	134, 214, 436
TaiI	ACGT	1 cut(s)	180
TasI	AATT	2 cut(s)	230, 311
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TscAI	CASTG	3 cut(s)	100, 137, 325
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	416, 432
TspRI	CASTG	3 cut(s)	100, 137, 325
XceI	RCATGY	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.