Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Reverse (-)

44230019 .. 44232351

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1773 bp

ATGGACGTCAGAAAGCTATCCGCGATGGAGAACACCACCAAGGCAGGCAAGACCATGAAACAGAAAGTCAAGTTTGTCGTGGACGAGGAGGTGGCAAAGGTGTCAGACGCCTTGCCTCTGCCTCTGTACATAACCAACGCCGTCTTCTTCGCTCTCTTCTTCTCCGTCGTCTACTTCTTGCTCACTAGCTGGCGTGAGAAGATCCGTACCAACACTCCTCTTCACAACATAGATCTCTCTGAGATTGTTGCCATCCTTGCTCTTATAGCCTCCTTCATCTATCTCCTCGGCTTCTTCGGCATCGATTTTGTTCAGTCCCTCTTTCTCCAGCCCAGTAATGACATCTGGGCCGCCGACGATGACGAGGAAGAGATTATTCTCAAGCAGGATGCTCGTAAATTTCCTTGTGGCGAGGCACTTGATTACTCAATCCCAAAAATGGCTCCAATTGCTTCTCCTAAATTCGTCCAAAAGGTGTTTGATGACAAGCCAGCGATCCAGACCCCTCCACCAACCGCAGAAGACGAGGAGATTATCAAGGCTGTCGTTGCTGGAACCATTCCTTCATATTCACTCGAGTCAAAGCTAGGCGACTGCAAGAGGGCAGCTTCTGTTAGGCGTGAGGCATTACAGAGAGTTACAGGCAAGTCTTTTGAGGGTCTGCCTTTGGAGGGCTTTGATTACGAATCCATTTTGGGTCAATGCTGTGAAATGCCGGTTGGGTATATTACCATTCCTGTTGGGATTGCCGGGCCTCTCATGCTTGATGGAAGAGAGTTCTCTGTCCCCATGGCCACAACTGAAGGTTGCTTGGTGGCTAGTACCAACCGTGGTTGCAAAGCTATTAACTTGTCCGGTGGAGCTACCAGTGTGCTATTGAAAGATGGAATGACCAGAGCACCTGTTGTCAGATTCAACTCTGCTAAAAGAGCTACTGAGTTGAAGTTCTTCATGGAAGACCCTGCCAATTACGAAACCATTTCCATGATTTTCAACAAATCAAGCAGATTTGGTAGACTTCAGACAGTCAAGTGTGCAGTGGCTGGGAAGAACCTCTACATGAGATTCTGCTGCACCACTGGTGATGCTATGGGGATGAACATGGTCTCTAAAGGTGTTCAAAATGTCCTCGACTTCCTTCAGAATGACTTCCCTGAAATGGATGTAATTGGCATCTCTAGTAACTACTGCTCAGACAAGAAGCCTGCTGCTCTGAACTGGATTGAAGGCCGTGGCAAATCTGTGGTTTGTGAGGCTGTAATCAAGGGAGACATAGTGAGTAAGGTGTTGAAAACCAACGTGGCGGCCTTGGTGGAGCTTAACATGCTCAAGAACCTTACTGGTTCCGCCATTGCTGGTGCTCTTGGTGGTTTCAATGCACATGCCAGTAACATTGTTTCAGCTGTGTACCTCGCCACTGGTCAAGACCCAGCTCAGAACATAGAGAGTTCTCACTGTATCACCATGATGGAAGCCATCAATGATGGCAAGGATCTTCACGTCTCGGTTACCATGCCTTCTATTGAGGTCGGTACAGTAGGAGGAGGTACCCAATTGGCATCGCAGTCGGCTTGCTTGAACTTGCTCGGAGTGAAGGGTGCCAACAGAGAGGCACCAGGATCAAACGCAAGGCAATTGGCCAGTGTTGTAGCTGGTTCTGTTCTTGCCGGAGAGCTTTCTCTCATGTCTGCTATTGCAGCTGGACAGCTTGTCAAGAGTCACATGAAGTATAACCGATCAAACAAAGACGTTACAACTATTGCTTCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

590

Amino Acids

63.48

Weight (kDa)

6.1

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	203 - 579	2.7e-144	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
Acc65I	GGTACC	1 cut(s)	1547
AccB1I	GGYRCC	3 cut(s)	1547, 1598, 1612
AccI	GTMKAC	2 cut(s)	171, 1015
AccII	CGCG	1 cut(s)	23
AciI	CCGC	5 cut(s)	21, 351, 516, 1304, 1347
AclWI	GGATC	4 cut(s)	196, 490, 1500, 1627
AcoI	YGGCCR	2 cut(s)	792, 1638
AcsI	RAATTY	2 cut(s)	398, 461
AcuI	CTGAAG	3 cut(s)	822, 1004, 1124
AcyI	GRCGYC	2 cut(s)	6, 108
AfaI	GTAC	6 cut(s)	128, 208, 823, 1409, 1534, 1549
AfiI	CCNNNNNNNGG	3 cut(s)	439, 671, 1159
AgsI	TTSAA	9 cut(s)	880, 916, 943, 994, 1121, 1226, 1291, 1375, 1579
AhdI	GACNNNNNGTC	1 cut(s)	1709
AjiI	CACGTC	1 cut(s)	1501
AjnI	CCWGG	1 cut(s)	1615
AjuI	GAANNNNNNNTTGG	4 cut(s)	128, 160, 702, 734
Alw21I	GWGCWC	2 cut(s)	901, 1363
Alw26I	GTCTC	3 cut(s)	1111, 1263, 1507
AlwI	GGATC	4 cut(s)	196, 490, 1500, 1627
AlwNI	CAGNNNCTG	2 cut(s)	611, 1043
Ama87I	CYCGRG	1 cut(s)	575
AoxI	GGCC	6 cut(s)	348, 752, 792, 1228, 1305, 1638
ApeKI	GCWGC	4 cut(s)	605, 1071, 1208, 1697
ApoI	RAATTY	2 cut(s)	398, 461
Asp700I	GAANNNNTTC	2 cut(s)	947, 1148
Asp718I	GGTACC	1 cut(s)	1547
AspS9I	GGNCC	2 cut(s)	348, 752
AsuC2I	CCSGG	1 cut(s)	751
AsuHPI	GGTGA	2 cut(s)	1094, 1453
AvaI	CYCGRG	1 cut(s)	575
BalI	TGGCCA	2 cut(s)	794, 1640
BanI	GGYRCC	3 cut(s)	1547, 1598, 1612
BarI	GAAGNNNNNNTAC	2 cut(s)	1040, 1072
BbsI	GAAGAC	3 cut(s)	136, 528, 963
Bbv12I	GWGCWC	2 cut(s)	901, 1363
BbvI	GCAGC	4 cut(s)	617, 1058, 1195, 1709
BccI	CCATC	7 cut(s)	19, 260, 761, 878, 1462, 1478, 1484
BceAI	ACGGC	2 cut(s)	125, 1215
BcgI	CGANNNNNNTGC	4 cut(s)	374, 408, 1548, 1582
BciT130I	CCWGG	1 cut(s)	1617
BcnI	CCSGG	1 cut(s)	751
BcoDI	GTCTC	3 cut(s)	1111, 1263, 1507
BfaI	CTAG	4 cut(s)	186, 587, 819, 1179
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	6 cut(s)	351, 606, 1072, 1209, 1305, 1698
BlsI	GCNGC	6 cut(s)	352, 607, 1073, 1210, 1306, 1699
Bme1390I	CCNGG	2 cut(s)	751, 1617
BmeRI	GACNNNNNGTC	1 cut(s)	1709
BmeT110I	CYCGRG	1 cut(s)	575
BmgBI	CACGTC	1 cut(s)	1501
BmgT120I	GGNCC	2 cut(s)	348, 752
BmiI	GGNNCC	6 cut(s)	444, 556, 1345, 1549, 1600, 1614
BmrFI	CCNGG	2 cut(s)	751, 1617
BmrI	ACTGGG	1 cut(s)	327
BmsI	GCATC	5 cut(s)	309, 379, 1075, 1182, 1568
BmuI	ACTGGG	1 cut(s)	327
BpiI	GAAGAC	3 cut(s)	136, 528, 963
BpmI	CTGGAG	1 cut(s)	311
BpuEI	CTTGAG	2 cut(s)	365, 1313
BpuMI	CCSGG	1 cut(s)	751
Bsa29I	ATCGAT	1 cut(s)	303
BsaHI	GRCGYC	2 cut(s)	6, 108
BsaI	GGTCTC	1 cut(s)	1111
BsaJI	CCNNGG	6 cut(s)	39, 286, 789, 829, 1231, 1308
BsaWI	WCCGGW	1 cut(s)	854
BsaXI	ACNNNNNCTCC	4 cut(s)	199, 229, 1260, 1290
Bsc4I	CCNNNNNNNGG	3 cut(s)	439, 671, 1159
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	8 cut(s)	333, 867, 1084, 1223, 1345, 1386, 1423, 1641
Bse3DI	GCAATG	1 cut(s)	1350
BseBI	CCWGG	1 cut(s)	1617
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	6 cut(s)	39, 286, 789, 829, 1231, 1308
BseGI	GGATG	4 cut(s)	252, 394, 1101, 1168
BseLI	CCNNNNNNNGG	3 cut(s)	439, 671, 1159
BseMI	GCAATG	1 cut(s)	1350
BseMII	CTCAG	4 cut(s)	231, 927, 1206, 1448
BseNI	ACTGG	8 cut(s)	333, 867, 1084, 1223, 1345, 1386, 1423, 1641
BseRI	GAGGAG	5 cut(s)	101, 207, 275, 542, 1557
BseXI	GCAGC	4 cut(s)	617, 1058, 1195, 1709
BseYI	CCCAGC	2 cut(s)	1043, 1429
BsgI	GTGCAG	2 cut(s)	1056, 1057
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	6 cut(s)	350, 754, 794, 1230, 1307, 1640
BshNI	GGYRCC	3 cut(s)	1547, 1598, 1612
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	2 cut(s)	901, 1363
BsiHKCI	CYCGRG	1 cut(s)	575
BsiSI	CCGG	4 cut(s)	716, 750, 855, 1668
BslFI	GGGAC	2 cut(s)	301, 770
BslI	CCNNNNNNNGG	3 cut(s)	439, 671, 1159
BsmAI	GTCTC	3 cut(s)	1111, 1263, 1507
BsmBI	CGTCTC	1 cut(s)	1507
BsmFI	GGGAC	2 cut(s)	301, 770
BsnI	GGCC	6 cut(s)	350, 754, 794, 1230, 1307, 1640
Bso31I	GGTCTC	1 cut(s)	1111
BsoBI	CYCGRG	1 cut(s)	575
Bsp1286I	GDGCHC	2 cut(s)	901, 1363
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	6 cut(s)	201, 232, 495, 1492, 1619, 1736
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	5 cut(s)	21, 351, 516, 1304, 1347
BspANI	GGCC	6 cut(s)	350, 754, 794, 1230, 1307, 1640
BspCNI	CTCAG	4 cut(s)	232, 928, 1205, 1447
BspDI	ATCGAT	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	6 cut(s)	444, 556, 1345, 1549, 1600, 1614
BspPI	GGATC	4 cut(s)	196, 490, 1500, 1627
BspT107I	GGYRCC	3 cut(s)	1547, 1598, 1612
BspTNI	GGTCTC	1 cut(s)	1111
BsrDI	GCAATG	1 cut(s)	1350
BsrFI	RCCGGY	1 cut(s)	715
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	8 cut(s)	333, 867, 1084, 1223, 1345, 1386, 1423, 1641
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	6 cut(s)	39, 286, 789, 829, 1231, 1308
BssMI	GATC	6 cut(s)	201, 232, 495, 1492, 1619, 1736
BssNI	GRCGYC	2 cut(s)	6, 108
BssT1I	CCWWGG	3 cut(s)	39, 789, 1308
Bst2UI	CCWGG	1 cut(s)	1617
Bst4CI	ACNGT	4 cut(s)	830, 1027, 1457, 1537
Bst6I	CTCTTC	4 cut(s)	161, 225, 363, 766
BstACI	GRCGYC	2 cut(s)	6, 108
BstAUI	TGTACA	1 cut(s)	126
BstC8I	GCNNGC	5 cut(s)	46, 191, 492, 1206, 1573
BstDEI	CTNAG	4 cut(s)	240, 936, 1192, 1434
BstDSI	CCRYGG	3 cut(s)	789, 829, 1231
BstEII	GGTNACC	1 cut(s)	1507
BstF5I	GGATG	4 cut(s)	252, 394, 1101, 1168
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	6 cut(s)	204, 235, 498, 1495, 1622, 1739
BstMAI	GTCTC	3 cut(s)	1111, 1263, 1507
BstMBI	GATC	6 cut(s)	201, 232, 495, 1492, 1619, 1736
BstMWI	GCNNNNNNNGC	9 cut(s)	257, 266, 297, 449, 548, 760, 929, 1324, 1697
BstNI	CCWGG	1 cut(s)	1617
BstNSI	RCATGY	2 cut(s)	1327, 1385
BstPI	GGTNACC	1 cut(s)	1507
BstSCI	CCNGG	2 cut(s)	749, 1615
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	4 cut(s)	617, 1058, 1195, 1709
BstV2I	GAAGAC	3 cut(s)	136, 528, 963
BstX2I	RGATCY	3 cut(s)	201, 232, 1492
BstYI	RGATCY	3 cut(s)	201, 232, 1492
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	6 cut(s)	350, 754, 794, 1230, 1307, 1640
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	3 cut(s)	789, 829, 1231
BtgZI	GCGATG	2 cut(s)	38, 1545
BtrI	CACGTC	1 cut(s)	1501
BtsCI	GGATG	4 cut(s)	252, 394, 1101, 1168
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	6 cut(s)	874, 1044, 1077, 1416, 1453, 1648
Cac8I	GCNNGC	5 cut(s)	46, 191, 492, 1206, 1573
CaiI	CAGNNNCTG	2 cut(s)	611, 1043
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	2 cut(s)	348, 752
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	6 cut(s)	127, 207, 822, 1408, 1533, 1548
CviQI	GTAC	6 cut(s)	127, 207, 822, 1408, 1533, 1548
DdeI	CTNAG	4 cut(s)	240, 936, 1192, 1434
DpnI	GATC	6 cut(s)	203, 234, 497, 1494, 1621, 1738
DpnII	GATC	6 cut(s)	201, 232, 495, 1492, 1619, 1736
DriI	GACNNNNNGTC	1 cut(s)	1709
EaeI	YGGCCR	2 cut(s)	792, 1638
Eam1104I	CTCTTC	4 cut(s)	161, 225, 363, 766
Eam1105I	GACNNNNNGTC	1 cut(s)	1709
EarI	CTCTTC	4 cut(s)	161, 225, 363, 766
EciI	GGCGGA	1 cut(s)	1336
Eco130I	CCWWGG	3 cut(s)	39, 789, 1308
Eco31I	GGTCTC	1 cut(s)	1111
Eco57I	CTGAAG	3 cut(s)	822, 1004, 1124
Eco88I	CYCGRG	1 cut(s)	575
Eco91I	GGTNACC	1 cut(s)	1507
EcoO65I	GGTNACC	1 cut(s)	1507
EcoRII	CCWGG	1 cut(s)	1615
EcoT14I	CCWWGG	3 cut(s)	39, 789, 1308
ErhI	CCWWGG	3 cut(s)	39, 789, 1308
Esp3I	CGTCTC	1 cut(s)	1507
FaqI	GGGAC	2 cut(s)	301, 770
FblI	GTMKAC	2 cut(s)	171, 1015
Fnu4HI	GCNGC	6 cut(s)	351, 606, 1072, 1209, 1305, 1698
FokI	GGATG	4 cut(s)	239, 401, 1108, 1175
Fsp4HI	GCNGC	6 cut(s)	351, 606, 1072, 1209, 1305, 1698
FspBI	CTAG	4 cut(s)	186, 587, 819, 1179
GluI	GCNGC	6 cut(s)	351, 606, 1072, 1209, 1305, 1698
GsaI	CCCAGC	2 cut(s)	1047, 1433
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	6 cut(s)	350, 754, 794, 1230, 1307, 1640
HapII	CCGG	4 cut(s)	716, 750, 855, 1668
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	2 cut(s)	6, 108
HinfI	GANTC	5 cut(s)	578, 686, 912, 1065, 1717
HpaII	CCGG	4 cut(s)	716, 750, 855, 1668
HphI	GGTGA	2 cut(s)	1094, 1453
Hpy166II	GTNNAC	4 cut(s)	82, 172, 1016, 1408
Hpy188III	TCNNGA	4 cut(s)	499, 1330, 1424, 1714
Hpy8I	GTNNAC	4 cut(s)	82, 172, 1016, 1408
Hpy99I	CGWCG	2 cut(s)	170, 359
HpyAV	CCTTC	7 cut(s)	283, 573, 797, 1148, 1220, 1527, 1588
HpyCH4III	ACNGT	4 cut(s)	830, 1027, 1457, 1537
HpyCH4IV	ACGT	4 cut(s)	6, 1299, 1500, 1749
HpyCH4V	TGCA	6 cut(s)	597, 837, 1037, 1074, 1379, 1697
HpyF10VI	GCNNNNNNNGC	9 cut(s)	257, 266, 297, 449, 548, 760, 929, 1324, 1697
HpyF3I	CTNAG	4 cut(s)	240, 936, 1192, 1434
HpySE526I	ACGT	4 cut(s)	6, 1299, 1500, 1749
Hsp92I	GRCGYC	2 cut(s)	6, 108
KpnI	GGTACC	1 cut(s)	1551
Kzo9I	GATC	6 cut(s)	201, 232, 495, 1492, 1619, 1736
LmnI	GCTCC	3 cut(s)	448, 860, 1315
Lsp1109I	GCAGC	4 cut(s)	617, 1058, 1195, 1709
LweI	GCATC	5 cut(s)	309, 379, 1075, 1182, 1568
MaeI	CTAG	4 cut(s)	186, 587, 819, 1179
MaeII	ACGT	4 cut(s)	6, 1299, 1500, 1749
MaeIII	GTNAC	6 cut(s)	637, 1181, 1388, 1507, 1718, 1750
MalI	GATC	6 cut(s)	203, 234, 497, 1494, 1621, 1738
MboI	GATC	6 cut(s)	201, 232, 495, 1492, 1619, 1736
MfeI	CAATTG	3 cut(s)	447, 1553, 1634
MflI	RGATCY	3 cut(s)	201, 232, 1492
MhlI	GDGCHC	2 cut(s)	901, 1363
MlsI	TGGCCA	2 cut(s)	794, 1640
MluCI	AATT	7 cut(s)	398, 447, 461, 967, 1167, 1553, 1634
MluNI	TGGCCA	2 cut(s)	794, 1640
MlyI	GAGTC	2 cut(s)	587, 1726
Mox20I	TGGCCA	2 cut(s)	794, 1640
MroXI	GAANNNNTTC	2 cut(s)	947, 1148
MscI	TGGCCA	2 cut(s)	794, 1640
MseI	TTAA	3 cut(s)	846, 1320, 1771
MslI	CAYNNNNRTG	2 cut(s)	983, 1466
Msp20I	TGGCCA	2 cut(s)	794, 1640
MspA1I	CMGCKG	2 cut(s)	1403, 1700
MspI	CCGG	4 cut(s)	716, 750, 855, 1668
MspR9I	CCNGG	2 cut(s)	751, 1617
MunI	CAATTG	3 cut(s)	447, 1553, 1634
MvaI	CCWGG	1 cut(s)	1617
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	9 cut(s)	257, 266, 297, 449, 548, 760, 929, 1324, 1697
NciI	CCSGG	1 cut(s)	751
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	6 cut(s)	201, 232, 495, 1492, 1619, 1736
NlaIV	GGNNCC	6 cut(s)	444, 556, 1345, 1549, 1600, 1614
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	1718
NspI	RCATGY	2 cut(s)	1327, 1385
PaeR7I	CTCGAG	1 cut(s)	575
PdmI	GAANNNNTTC	2 cut(s)	947, 1148
PfeI	GAWTC	3 cut(s)	686, 912, 1065
PkrI	GCNGC	6 cut(s)	352, 607, 1073, 1210, 1306, 1699
PleI	GAGTC	2 cut(s)	586, 1725
PpsI	GAGTC	2 cut(s)	586, 1725
Psp6I	CCWGG	1 cut(s)	1615
PspEI	GGTNACC	1 cut(s)	1507
PspFI	CCCAGC	2 cut(s)	1043, 1429
PspGI	CCWGG	1 cut(s)	1615
PspN4I	GGNNCC	6 cut(s)	444, 556, 1345, 1549, 1600, 1614
PspPI	GGNCC	2 cut(s)	348, 752
PspXI	VCTCGAGB	1 cut(s)	575
PstNI	CAGNNNCTG	2 cut(s)	611, 1043
PsuI	RGATCY	3 cut(s)	201, 232, 1492
PvuII	CAGCTG	2 cut(s)	1403, 1700
RsaI	GTAC	6 cut(s)	128, 208, 823, 1409, 1534, 1549
RsaNI	GTAC	6 cut(s)	127, 207, 822, 1408, 1533, 1548
RseI	CAYNNNNRTG	2 cut(s)	983, 1466
SaqAI	TTAA	3 cut(s)	846, 1320, 1771
SatI	GCNGC	6 cut(s)	351, 606, 1072, 1209, 1305, 1698
Sau3AI	GATC	6 cut(s)	201, 232, 495, 1492, 1619, 1736
Sau96I	GGNCC	2 cut(s)	348, 752
SchI	GAGTC	2 cut(s)	587, 1726
ScrFI	CCNGG	2 cut(s)	751, 1617
SduI	GDGCHC	2 cut(s)	901, 1363
SfaNI	GCATC	5 cut(s)	309, 379, 1075, 1182, 1568
Sfr274I	CTCGAG	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	575
SmiMI	CAYNNNNRTG	2 cut(s)	983, 1466
SmlI	CTYRAG	3 cut(s)	380, 575, 1328
SmoI	CTYRAG	3 cut(s)	380, 575, 1328
Sse9I	AATT	7 cut(s)	398, 447, 461, 967, 1167, 1553, 1634
SsiI	CCGC	5 cut(s)	21, 351, 516, 1304, 1347
SspMI	CTAG	4 cut(s)	186, 587, 819, 1179
StyD4I	CCNGG	2 cut(s)	749, 1615
StyI	CCWWGG	3 cut(s)	39, 789, 1308
TaaI	ACNGT	4 cut(s)	830, 1027, 1457, 1537
TaiI	ACGT	4 cut(s)	9, 1302, 1503, 1752
TaqI	TCGA	3 cut(s)	303, 576, 1131
TasI	AATT	7 cut(s)	398, 447, 461, 967, 1167, 1553, 1634
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	2 cut(s)	353, 1307
TfiI	GAWTC	3 cut(s)	686, 912, 1065
Tru1I	TTAA	3 cut(s)	846, 1320, 1771
Tru9I	TTAA	3 cut(s)	846, 1320, 1771
TscAI	CASTG	6 cut(s)	874, 1044, 1084, 1423, 1460, 1648
TseFI	GTSAC	1 cut(s)	1718
TseI	GCWGC	4 cut(s)	605, 1071, 1208, 1697
Tsp45I	GTSAC	1 cut(s)	1718
TspDTI	ATGAA	7 cut(s)	71, 265, 555, 940, 1112, 1739, 1755
TspGWI	ACGGA	2 cut(s)	154, 194
TspRI	CASTG	6 cut(s)	874, 1044, 1084, 1423, 1460, 1648
XapI	RAATTY	2 cut(s)	398, 461
XceI	RCATGY	2 cut(s)	1327, 1385
XhoI	CTCGAG	1 cut(s)	575
XmiI	GTMKAC	2 cut(s)	171, 1015
XmnI	GAANNNNTTC	2 cut(s)	947, 1148
XspI	CTAG	4 cut(s)	186, 587, 819, 1179
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.