Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Forward (+)

19929710 .. 19935500

Gene Structure 5791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0140900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

ATGGCTTCCGACTCTTCTGCACCCAATTTCAACAACGGGCCTTCCTCTCCCGATGACTCCTTCTCCAGCCCAATCGGCAACACCTTCTCTTCTCCGGCCGACGCCGCCGCCGCTCGCCAGAGAACCCGCCGCCGATCCACCACACCCACCGCATTCGCAACCCCTCCCGCCTCCCGCTCCCGCTTCGCCGCCTCCGAAACAACCCCAACCCCATCGTCTCGCACGCGCCGCCCCAACGGCACCACACGCACCCCCTCCTCAACCGATGATGGCCCCCCCTCTTCGGAAGGCGGCGACAGCTACGGCATGGACGAGGACCGCCCCACCTTCGTCTGGGGCACCAATATCAGCGTCAATGATGTTAAGCTCGCCATTATTAGGTTTTTGAAGAATTTTCGGGACCAATCGCAGAACTCCGAGAGCGATTATCTTACCGAAGGCAAGTACATTGAGGCCATCAAGAGAATTCTGGAAATGGAAGGCGATTCGCTAGATGTGGATGCCCGCAATGTGTTTGATTATGATTCCGATTTGTATGCCAAGATGGTCAGGTACCCACTTGAGGTTCTTGCTATTTTCGACATTGTTTTGATGGAAATGTTGCCTGTCATAAACCCCTTGTTCGAGAAGCACATTCAGACTCGCATTTTCAATCTCAAAACATCAACATCCATGAGAAATCTGAACCCATCTGATATTGAGAGGATGGTTTCAATAAAGGGGATGATTATTCGGTCTAGTTCAATAATACCAGAGATAAGGGAAGCAATATTTAGATGCCTCGTGTGTGGTTACTACTCTGACCCTCTTCCTGTAGAAAAAGGGAAAATAAATGAACCTACAAGATGCATGAAGGAAGAGTGTCAAGCCAAGAATTCTATGACACTTGTTCACAACCGTTGCAGGTTTACTGATAAACAGATTGTGAGGCTCCAGGAGACGCCTGATGAGATCCCTGAAGGAGGGACACCGCATACTGTGAGTTTGTTGATGCATGACAAACTGGTTGATGCGGGAAAACCAGGTGACAGAGTTGAGGTTACTGGGATATATCGGGCTATGAGCGTAAGAGTTGGACCTACACAGAGAACTGTAAAATCATTATTCAAGACTTATATTGATTGTCTGCATATAAAAAAGTCTGACAAGTCAAGAATGCTGGCGGAGGAGCAGACGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGATGAGATTCTTTTTGATGAAAAGAAGGTGGAACAATTGAAAGAGCTGGCAAAACAGCCTGATATATATGATCGCCTAACCAGATCTTTGGCACCAAACATCTGGGAGTTAGATGATGTCAAAAAAGGCCTTCTTTGCCAGCTTTTTGGTGGGAATGCTTTGAAGTTGCCATCTGGTGCTAGGTTCCGTGGGGATATTAATATTCTTCTTGTTGGTGATCCTGGAACCAGCAAGTCCCAGCTGCTCCAGTACATACACAAGCTTGCTCCCCGTGGCATATACACTAGTGGAAGAGGGAGTTCTGCTGTTGGTTTGACTGCTTATGTTGCAAAAGATCCTGAAACAGGGGAAACTGTTTTAGAGAGTGGAGCCTTAGTTTTGAGTGATCGAGGCATTTGTTGCATTGATGAATTTGACAAAATGTCTGACAGTGCAAGGAGCATGTTACACGAGGTGATGGAGCAGCAAACTGTGTCAATAGCAAAGGCGGGAATCATTGCTTCCCTTAATGCTAGGACATCAGTCCTGGCTTGTGCAAATCCAAGTGGATCTCGCTATAATCCTCGCTTGTCAGTAATTGACAACATACACCTTCCTCCTACCTTATTATCCAGGTTTGATCTGATCTACTTAATCCTTGACAAGGCTGATGAGCAGACAGACAGGCGCCTTGCAAAGCATATTGTTGCCTTGCACTTTGAGAATCCTGAGACTGTACAGCAGGATGTTTTAGACCTTGCCACGTTGACTGCTTATGTGGGATATGCCCGAAAGCATATTCACCCACAATTATCTGATGAAGCTGCAGAGGAGTTGACTCGTGGCTATGTAGAGTTGAGGAGGAGAGGAAATTTTCCGGGCAGCAGCAAAAAGGTGATAACAGCAACTCCTAGGCAAATCGAGAGTTTGATACGTCTTAGTGAAGCTCTAGCTCGGATTCGTTTTTCAGAATCGGTTGAAAAGCATGATGTAATGGAGGCATTTCGGCTTCTTGAAGTTGCAATGCAACAATCAGCAACAGATCACTCCACTGGAACGATCGACATGGATCTTATTAATACTGGAATTTCGGCAAGTGAAAGAATGAGACGGGAGAATCTAGTGTCATCAGCTCGCAACTTAATTATGGAGAAGATGCAACTTGGGGGACCCTCAATGCGTTTGTTAGAGCTGCTGGAGGAGCTGAAGAAGCAGAGTTCTGGCAGTGAAATTCACCTCAACGATCTTAGGAATGCAATTGCTACTCTTGCAAGTGAGGGATTTGTCGCTGTTCATGGAGACAGTGTCAAAAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

834

Amino Acids

92.61

Weight (kDa)

6.14

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_N	PF14551	125 - 218	7.8e-12	MCM N-terminal domain
MCM_OB	PF17207	225 - 354	2.4e-40	MCM OB domain
MCM	PF00493	412 - 634	3.8e-101	MCM P-loop domain
AAA_5	PF07728	469 - 585	7.9e-07	AAA domain (dynein-related subfamily)
MCM_lid	PF17855	650 - 736	1.1e-26	MCM AAA-lid domain
WHD_MCM4	PF21128	760 - 834	7.1e-07	MCM4, winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	894
Acc65I	GGTACC	1 cut(s)	552
AccB1I	GGYRCC	5 cut(s)	239, 338, 552, 1297, 1872
AccBSI	CCGCTC	2 cut(s)	113, 177
AccII	CGCG	1 cut(s)	226
AclWI	GGATC	6 cut(s)	129, 946, 1418, 1535, 1762, 2262
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	9 cut(s)	391, 465, 874, 1186, 1201, 1616, 2056, 2271, 2415
AcuI	CTGAAG	2 cut(s)	978, 2411
AcyI	GRCGYC	3 cut(s)	102, 941, 1873
AdeI	CACNNNGTG	1 cut(s)	1660
AfaI	GTAC	4 cut(s)	446, 554, 1457, 1923
AfiI	CCNNNNNNNGG	7 cut(s)	283, 333, 378, 562, 962, 1550, 1849
AhdI	GACNNNNNGTC	1 cut(s)	1627
AhlI	ACTAGT	1 cut(s)	1490
AjnI	CCWGG	5 cut(s)	933, 1021, 1426, 1731, 1817
Alw26I	GTCTC	5 cut(s)	222, 932, 1910, 2287, 2478
AlwI	GGATC	6 cut(s)	129, 946, 1418, 1535, 1762, 2262
AoxI	GGCC	5 cut(s)	38, 96, 271, 453, 1333
ApeKI	GCWGC	6 cut(s)	1447, 1669, 2009, 2067, 2070, 2377
ApoI	RAATTY	9 cut(s)	391, 465, 874, 1186, 1201, 1616, 2056, 2271, 2415
AseI	ATTAAT	2 cut(s)	1404, 2262
Asp718I	GGTACC	1 cut(s)	552
AspA2I	CCTAGG	1 cut(s)	2096
AspLEI	GCGC	2 cut(s)	228, 1875
AspS9I	GGNCC	6 cut(s)	38, 272, 316, 400, 1076, 2354
AsuC2I	CCSGG	1 cut(s)	2064
AsuHPI	GGTGA	6 cut(s)	1037, 1433, 1672, 1979, 2092, 2411
AvaII	GGWCC	4 cut(s)	316, 400, 1076, 2354
AvrII	CCTAGG	1 cut(s)	2096
BaeGI	GKGCMC	1 cut(s)	341
BanI	GGYRCC	5 cut(s)	239, 338, 552, 1297, 1872
BauI	CACGAG	3 cut(s)	782, 1655, 2025
BbvI	GCAGC	6 cut(s)	1434, 1681, 1996, 2079, 2082, 2364
BccI	CCATC	9 cut(s)	220, 263, 464, 538, 586, 697, 700, 1384, 1657
BceAI	ACGGC	2 cut(s)	253, 319
BcgI	CGANNNNNNTGC	3 cut(s)	33, 518, 552
BciT130I	CCWGG	5 cut(s)	935, 1023, 1428, 1733, 1819
BcnI	CCSGG	1 cut(s)	2064
BcoDI	GTCTC	5 cut(s)	222, 932, 1910, 2287, 2478
BcuI	ACTAGT	1 cut(s)	1490
BfaI	CTAG	8 cut(s)	491, 738, 1386, 1491, 1719, 2097, 2135, 2306
BfmI	CTRYAG	2 cut(s)	813, 2010
BfoI	RGCGCY	1 cut(s)	1876
BfuAI	ACCTGC	1 cut(s)	894
BglI	GCCNNNNNGGC	2 cut(s)	75, 237
BglII	AGATCT	1 cut(s)	1289
BlnI	CCTAGG	1 cut(s)	2096
Bme1390I	CCNGG	6 cut(s)	935, 1023, 1428, 1733, 1819, 2064
Bme18I	GGWCC	4 cut(s)	316, 400, 1076, 2354
BmeRI	GACNNNNNGTC	1 cut(s)	1627
BmgT120I	GGNCC	6 cut(s)	38, 272, 316, 400, 1076, 2354
BmrFI	CCNGG	6 cut(s)	935, 1023, 1428, 1733, 1819, 2064
BmrI	ACTGGG	1 cut(s)	1053
BmsI	GCATC	6 cut(s)	490, 767, 836, 981, 1000, 2331
BmuI	ACTGGG	1 cut(s)	1053
BoxI	GACNNNNGTC	1 cut(s)	1727
BpmI	CTGGAG	4 cut(s)	49, 917, 1436, 2402
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	2064
BsaHI	GRCGYC	3 cut(s)	102, 941, 1873
BsaJI	CCNNGG	4 cut(s)	1191, 1393, 1477, 2096
BsaXI	ACNNNNNCTCC	8 cut(s)	47, 77, 1566, 1596, 2077, 2107, 2475, 2505
Bsc4I	CCNNNNNNNGG	7 cut(s)	283, 333, 378, 562, 962, 1550, 1849
Bse1I	ACTGG	5 cut(s)	1008, 1048, 1453, 2242, 2272
Bse3DI	GCAATG	3 cut(s)	514, 1701, 2214
BseBI	CCWGG	5 cut(s)	935, 1023, 1428, 1733, 1819
BseDI	CCNNGG	4 cut(s)	1191, 1393, 1477, 2096
BseGI	GGATG	5 cut(s)	505, 668, 711, 729, 1936
BseLI	CCNNNNNNNGG	7 cut(s)	283, 333, 378, 562, 962, 1550, 1849
BseMI	GCAATG	3 cut(s)	514, 1701, 2214
BseMII	CTCAG	1 cut(s)	1905
BseNI	ACTGG	5 cut(s)	1008, 1048, 1453, 2242, 2272
BseRI	GAGGAG	6 cut(s)	247, 1181, 2030, 2059, 2062, 2399
BseSI	GKGCMC	1 cut(s)	341
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	6 cut(s)	1434, 1681, 1996, 2079, 2082, 2364
BseYI	CCCAGC	1 cut(s)	1443
Bsh1236I	CGCG	1 cut(s)	226
Bsh1285I	CGRYCG	2 cut(s)	99, 2247
BshFI	GGCC	5 cut(s)	40, 98, 273, 455, 1335
BshNI	GGYRCC	5 cut(s)	239, 338, 552, 1297, 1872
BsiEI	CGRYCG	2 cut(s)	99, 2247
BsiSI	CCGG	2 cut(s)	95, 2063
BslFI	GGGAC	4 cut(s)	413, 979, 1426, 2367
BslI	CCNNNNNNNGG	7 cut(s)	283, 333, 378, 562, 962, 1550, 1849
BsmAI	GTCTC	5 cut(s)	222, 932, 1910, 2287, 2478
BsmBI	CGTCTC	3 cut(s)	222, 932, 2287
BsmFI	GGGAC	4 cut(s)	413, 979, 1426, 2367
BsmI	GAATGC	4 cut(s)	152, 1161, 1366, 2443
BsnI	GGCC	5 cut(s)	40, 98, 273, 455, 1335
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp1407I	TGTACA	1 cut(s)	1921
BspANI	GGCC	5 cut(s)	40, 98, 273, 455, 1335
BspCNI	CTCAG	1 cut(s)	1906
BspFNI	CGCG	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	2014
BspMI	ACCTGC	1 cut(s)	894
BspPI	GGATC	6 cut(s)	129, 946, 1418, 1535, 1762, 2262
BspT107I	GGYRCC	5 cut(s)	239, 338, 552, 1297, 1872
BsrBI	CCGCTC	2 cut(s)	113, 177
BsrDI	GCAATG	3 cut(s)	514, 1701, 2214
BsrGI	TGTACA	1 cut(s)	1921
BsrI	ACTGG	5 cut(s)	1008, 1048, 1453, 2242, 2272
BssECI	CCNNGG	4 cut(s)	1191, 1393, 1477, 2096
BssNI	GRCGYC	3 cut(s)	102, 941, 1873
BssSI	CACGAG	3 cut(s)	782, 1655, 2025
BssT1I	CCWWGG	2 cut(s)	1191, 2096
Bst2BI	CACGAG	3 cut(s)	782, 1655, 2025
Bst2UI	CCWGG	5 cut(s)	935, 1023, 1428, 1733, 1819
Bst4CI	ACNGT	8 cut(s)	899, 979, 1093, 1561, 1637, 1678, 1921, 2489
Bst6I	CTCTTC	6 cut(s)	19, 94, 286, 813, 852, 1492
BstACI	GRCGYC	3 cut(s)	102, 941, 1873
BstAPI	GCANNNNNTGC	1 cut(s)	1605
BstAUI	TGTACA	1 cut(s)	1921
BstC8I	GCNNGC	9 cut(s)	115, 224, 369, 505, 1161, 1254, 1346, 1470, 2320
BstDEI	CTNAG	4 cut(s)	1579, 1914, 2123, 2432
BstDSI	CCRYGG	2 cut(s)	1393, 1477
BstENI	CCTNNNNNAGG	3 cut(s)	960, 1548, 1847
BstF5I	GGATG	5 cut(s)	505, 668, 711, 729, 1936
BstFNI	CGCG	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	1876
BstHHI	GCGC	2 cut(s)	228, 1875
BstMAI	GTCTC	5 cut(s)	222, 932, 1910, 2287, 2478
BstMCI	CGRYCG	2 cut(s)	99, 2247
BstNI	CCWGG	5 cut(s)	935, 1023, 1428, 1733, 1819
BstNSI	RCATGY	1 cut(s)	1651
BstPAI	GACNNNNGTC	1 cut(s)	1727
BstSCI	CCNGG	6 cut(s)	933, 1021, 1426, 1731, 1817, 2062
BstSFI	CTRYAG	2 cut(s)	813, 2010
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	6 cut(s)	1434, 1681, 1996, 2079, 2082, 2364
BstX2I	RGATCY	5 cut(s)	951, 1289, 1540, 1754, 2254
BstXI	CCANNNNNNTGG	3 cut(s)	1294, 1308, 1352
BstYI	RGATCY	5 cut(s)	951, 1289, 1540, 1754, 2254
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	5 cut(s)	40, 98, 273, 455, 1335
BtgI	CCRYGG	2 cut(s)	1393, 1477
BtsCI	GGATG	5 cut(s)	505, 668, 711, 729, 1936
BtsI	GCAGTG	1 cut(s)	2416
BtsIMutI	CAGTG	4 cut(s)	1642, 2235, 2416, 2494
BveI	ACCTGC	1 cut(s)	894
Cac8I	GCNNGC	9 cut(s)	115, 224, 369, 505, 1161, 1254, 1346, 1470, 2320
CfoI	GCGC	2 cut(s)	228, 1875
Cfr13I	GGNCC	6 cut(s)	38, 272, 316, 400, 1076, 2354
CseI	GACGC	3 cut(s)	110, 340, 949
CsiI	ACCWGGT	1 cut(s)	1021
Csp6I	GTAC	4 cut(s)	445, 553, 1456, 1922
CviAII	CATG	8 cut(s)	307, 673, 850, 995, 1648, 2171, 2251, 2480
CviQI	GTAC	4 cut(s)	445, 553, 1456, 1922
DdeI	CTNAG	4 cut(s)	1579, 1914, 2123, 2432
DinI	GGCGCC	1 cut(s)	1874
DraIII	CACNNNGTG	1 cut(s)	1660
DriI	GACNNNNNGTC	1 cut(s)	1627
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	6 cut(s)	19, 94, 286, 813, 852, 1492
Eam1105I	GACNNNNNGTC	1 cut(s)	1627
EarI	CTCTTC	6 cut(s)	19, 94, 286, 813, 852, 1492
EciI	GGCGGA	1 cut(s)	1178
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	1191, 2096
Eco147I	AGGCCT	1 cut(s)	1335
Eco47I	GGWCC	4 cut(s)	316, 400, 1076, 2354
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	978, 2411
EcoNI	CCTNNNNNAGG	3 cut(s)	960, 1548, 1847
EcoO109I	RGGNCCY	1 cut(s)	2354
EcoRI	GAATTC	3 cut(s)	465, 874, 1186
EcoRII	CCWGG	5 cut(s)	933, 1021, 1426, 1731, 1817
EcoT14I	CCWWGG	2 cut(s)	1191, 2096
EcoT22I	ATGCAT	2 cut(s)	851, 996
EgeI	GGCGCC	1 cut(s)	1874
EheI	GGCGCC	1 cut(s)	1874
ErhI	CCWWGG	2 cut(s)	1191, 2096
Esp3I	CGTCTC	3 cut(s)	222, 932, 2287
FaeI	CATG	8 cut(s)	310, 676, 853, 998, 1651, 2174, 2254, 2483
FalI	AAGNNNNNCTT	2 cut(s)	1323, 1355
FaqI	GGGAC	4 cut(s)	413, 979, 1426, 2367
FatI	CATG	8 cut(s)	306, 672, 849, 994, 1647, 2170, 2250, 2479
FauI	CCCGC	7 cut(s)	134, 175, 182, 188, 512, 1006, 1687
FokI	GGATG	5 cut(s)	512, 655, 718, 736, 1943
FspBI	CTAG	8 cut(s)	491, 738, 1386, 1491, 1719, 2097, 2135, 2306
GlaI	GCGC	2 cut(s)	227, 1874
GsaI	CCCAGC	1 cut(s)	1447
GsuI	CTGGAG	4 cut(s)	49, 917, 1436, 2402
HaeII	RGCGCY	1 cut(s)	1876
HaeIII	GGCC	5 cut(s)	40, 98, 273, 455, 1335
HapII	CCGG	2 cut(s)	95, 2063
HgaI	GACGC	3 cut(s)	110, 340, 949
HhaI	GCGC	2 cut(s)	228, 1875
Hin1I	GRCGYC	3 cut(s)	102, 941, 1873
Hin1II	CATG	8 cut(s)	310, 676, 853, 998, 1651, 2174, 2254, 2483
Hin6I	GCGC	2 cut(s)	226, 1873
HinP1I	GCGC	2 cut(s)	226, 1873
HincII	GTYRAC	2 cut(s)	1953, 2022
HindII	GTYRAC	2 cut(s)	1953, 2022
HindIII	AAGCTT	1 cut(s)	1466
HpaII	CCGG	2 cut(s)	95, 2063
HphI	GGTGA	6 cut(s)	1037, 1433, 1672, 1979, 2092, 2411
Hpy166II	GTNNAC	4 cut(s)	892, 909, 1953, 2022
Hpy8I	GTNNAC	4 cut(s)	892, 909, 1953, 2022
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	8 cut(s)	899, 979, 1093, 1561, 1637, 1678, 1921, 2489
HpyCH4IV	ACGT	2 cut(s)	1949, 2119
HpyF3I	CTNAG	4 cut(s)	1579, 1914, 2123, 2432
HpySE526I	ACGT	2 cut(s)	1949, 2119
Hsp92I	GRCGYC	3 cut(s)	102, 941, 1873
Hsp92II	CATG	8 cut(s)	310, 676, 853, 998, 1651, 2174, 2254, 2483
HspAI	GCGC	2 cut(s)	226, 1873
KasI	GGCGCC	1 cut(s)	1872
KflI	GGGWCCC	1 cut(s)	2354
KpnI	GGTACC	1 cut(s)	556
LmnI	GCTCC	9 cut(s)	182, 936, 1168, 1455, 1477, 1574, 1644, 1666, 2386
Lsp1109I	GCAGC	6 cut(s)	1434, 1681, 1996, 2079, 2082, 2364
LweI	GCATC	6 cut(s)	490, 767, 836, 981, 1000, 2331
MabI	ACCWGGT	1 cut(s)	1021
MaeI	CTAG	8 cut(s)	491, 738, 1386, 1491, 1719, 2097, 2135, 2306
MaeII	ACGT	2 cut(s)	1949, 2119
MaeIII	GTNAC	4 cut(s)	791, 1025, 1039, 1650
MbiI	CCGCTC	2 cut(s)	113, 177
MfeI	CAATTG	2 cut(s)	1241, 2442
MflI	RGATCY	5 cut(s)	951, 1289, 1540, 1754, 2254
MhlI	GDGCHC	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	1873
MlyI	GAGTC	4 cut(s)	5, 50, 634, 2017
MmeI	TCCRAC	2 cut(s)	33, 1054
Mph1103I	ATGCAT	2 cut(s)	851, 996
MseI	TTAA	6 cut(s)	363, 1404, 1713, 1838, 2262, 2327
MspA1I	CMGCKG	1 cut(s)	1447
MspI	CCGG	2 cut(s)	95, 2063
MspR9I	CCNGG	6 cut(s)	935, 1023, 1428, 1733, 1819, 2064
MunI	CAATTG	2 cut(s)	1241, 2442
Mva1269I	GAATGC	4 cut(s)	152, 1161, 1366, 2443
MvaI	CCWGG	5 cut(s)	935, 1023, 1428, 1733, 1819
MvnI	CGCG	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	1873
NciI	CCSGG	1 cut(s)	2064
NlaIII	CATG	8 cut(s)	310, 676, 853, 998, 1651, 2174, 2254, 2483
NmuCI	GTSAC	1 cut(s)	1025
NsiI	ATGCAT	2 cut(s)	851, 996
NspI	RCATGY	1 cut(s)	1651
PceI	AGGCCT	1 cut(s)	1335
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 309
PctI	GAATGC	4 cut(s)	152, 1161, 1366, 2443
PfeI	GAWTC	8 cut(s)	485, 524, 1213, 1698, 1909, 2143, 2156, 2302
PflFI	GACNNNGTC	1 cut(s)	2489
PfoI	TCCNGGA	2 cut(s)	933, 1426
Ple19I	CGATCG	1 cut(s)	2247
PleI	GAGTC	4 cut(s)	5, 50, 634, 2017
PluTI	GGCGCC	1 cut(s)	1876
PpsI	GAGTC	4 cut(s)	5, 50, 634, 2017
PpuMI	RGGWCCY	1 cut(s)	2354
PshAI	GACNNNNGTC	1 cut(s)	1727
PshBI	ATTAAT	2 cut(s)	1404, 2262
Psp5II	RGGWCCY	1 cut(s)	2354
Psp6I	CCWGG	5 cut(s)	933, 1021, 1426, 1731, 1817
PspFI	CCCAGC	1 cut(s)	1443
PspGI	CCWGG	5 cut(s)	933, 1021, 1426, 1731, 1817
PspPI	GGNCC	6 cut(s)	38, 272, 316, 400, 1076, 2354
PspPPI	RGGWCCY	1 cut(s)	2354
PstI	CTGCAG	1 cut(s)	2014
PsuI	RGATCY	5 cut(s)	951, 1289, 1540, 1754, 2254
PsyI	GACNNNGTC	1 cut(s)	2489
PvuI	CGATCG	1 cut(s)	2247
PvuII	CAGCTG	1 cut(s)	1447
RsaI	GTAC	4 cut(s)	446, 554, 1457, 1923
RsaNI	GTAC	4 cut(s)	445, 553, 1456, 1922
SaqAI	TTAA	6 cut(s)	363, 1404, 1713, 1838, 2262, 2327
Sau96I	GGNCC	6 cut(s)	38, 272, 316, 400, 1076, 2354
SchI	GAGTC	4 cut(s)	5, 50, 634, 2017
ScrFI	CCNGG	6 cut(s)	935, 1023, 1428, 1733, 1819, 2064
SduI	GDGCHC	1 cut(s)	341
SexAI	ACCWGGT	1 cut(s)	1021
SfaNI	GCATC	6 cut(s)	490, 767, 836, 981, 1000, 2331
SfcI	CTRYAG	2 cut(s)	813, 2010
SfoI	GGCGCC	1 cut(s)	1874
SinI	GGWCC	4 cut(s)	316, 400, 1076, 2354
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	1490
SseBI	AGGCCT	1 cut(s)	1335
SspDI	GGCGCC	1 cut(s)	1872
SspI	AATATT	2 cut(s)	771, 1408
SspMI	CTAG	8 cut(s)	491, 738, 1386, 1491, 1719, 2097, 2135, 2306
StuI	AGGCCT	1 cut(s)	1335
StyD4I	CCNGG	6 cut(s)	933, 1021, 1426, 1731, 1817, 2062
StyI	CCWWGG	2 cut(s)	1191, 2096
TaaI	ACNGT	8 cut(s)	899, 979, 1093, 1561, 1637, 1678, 1921, 2489
TaiI	ACGT	2 cut(s)	1952, 2122
TaqI	TCGA	5 cut(s)	579, 624, 1594, 2106, 2247
TaqII	GACCGA	1 cut(s)	723
TatI	WGTACW	3 cut(s)	444, 1455, 1921
TauI	GCSGC	7 cut(s)	107, 110, 113, 132, 191, 231, 294
TfiI	GAWTC	8 cut(s)	485, 524, 1213, 1698, 1909, 2143, 2156, 2302
Tru1I	TTAA	6 cut(s)	363, 1404, 1713, 1838, 2262, 2327
Tru9I	TTAA	6 cut(s)	363, 1404, 1713, 1838, 2262, 2327
TscAI	CASTG	4 cut(s)	1642, 2242, 2416, 2494
TseFI	GTSAC	1 cut(s)	1025
TseI	GCWGC	6 cut(s)	1447, 1669, 2009, 2067, 2070, 2377
Tsp45I	GTSAC	1 cut(s)	1025
TspDTI	ATGAA	6 cut(s)	849, 866, 1239, 1629, 2019, 2468
TspGWI	ACGGA	2 cut(s)	1190, 1382
TspRI	CASTG	4 cut(s)	1642, 2242, 2416, 2494
Tth111I	GACNNNGTC	1 cut(s)	2489
VpaK11BI	GGWCC	4 cut(s)	316, 400, 1076, 2354
VspI	ATTAAT	2 cut(s)	1404, 2262
XagI	CCTNNNNNAGG	3 cut(s)	960, 1548, 1847
XapI	RAATTY	9 cut(s)	391, 465, 874, 1186, 1201, 1616, 2056, 2271, 2415
XceI	RCATGY	1 cut(s)	1651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1352
XmaJI	CCTAGG	1 cut(s)	2096
XspI	CTAG	8 cut(s)	491, 738, 1386, 1491, 1719, 2097, 2135, 2306
Zsp2I	ATGCAT	2 cut(s)	851, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.