Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Forward (+)

43641588 .. 43645563

Gene Structure 3976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGGAGATGGAAGTCGGAAGGAGATCGGCGACGGAGCACAACAATACCAAAGCAAGCAAGCCTTTGAAAATGAAAGTGAAGTTCGTCGACAATGAAAAGGACGTCGTGAAGGCATCAGACGCCTTGCCTCTGCCTCTGTACCTGACCAATGCCCTGTTCTTCACTCTTTTCTTCTCCGTCGTCTACTTCTTGCTCACAAGCTGGCGTGAGAAGATCCGCACCAACACTCCTCTCCACATCATCAATCTCTCTGAGATCGTGGCTATTCTAGCCTTCGTAGCCTCCTTCATCTACCTCCTCGGGTTCTTTGGTATCGATTTCGTCCAATCCCTCATTCTCCAGCCCAGCAATGACATCTGGGCCGACCATGATGACGAGGAGATTATTCTCAAGGAGGATGCTCGCAAAGTTCCTTGTGGCCAGGCCCTCAATTGCTCAATTCCCAAAATGGCTCCCATTGCTTCACCTAAAGCTGCTCCTGAAGCTGCCCCAAAGGTGTTTGAGGAGAAGGCAATGATCGAGACCCCGCCAACAACTGAAGAAGACGAAGAGATCATCAAGGCAGTGGTTGCTGGAACCATTCCTTCATACTCACTCGAGACAAAGCTTGGCGATTGCAAGAGGGCAGCTTCTATTAGGCGTGAGGCTTTACAAAGAGTTACTGGCAAGTCTCTAGAGGGTTTGCCATTGGAGGGGTTCGATTACGAGTCCATTTTGGGTCAATGCTGCGAAATGCCAGTTGGATATATTACCATTCCTGTTGGGATTGCTGGGCCTCTCATGCTCGATGGAAAACAGTTCTCAGTTCCCATGGCCACCACTGAAGGTACCTTGGTGGCTAGTACCAACCGTGGTTGCAAAGCTATCAACTTGTCTGGTGGAGCTTCCAGTGTTCTTTTGAAAGATGGAATGACCAGAGCTCCTGTTGTCAGATTCAACTCTGCCAAAAGAGCCGCTGAATTGAAGTTTTTCATGGAAGACCCCGACAACTACGAAACCATCTCTATGGTCTTCAACAAATCTAGCAGATTTGGTAGACTTCAATCAGTTAAGTGTGCCGTTGCTGGGAAGAACCTGTACATGAGGTTCTGTTGCAGCACTGGTGATGCTATGGGGATGAATATGGTCTCTAAAGGCGTTCAAAACGTTCTTGATTTCCTCCAGAATGACTTCCCTGACATGGATGTCATTGGCATTTCTGGTAACTACTGCTCAGACAAGAAACCTGCTGCCGTGAACTGGATCGAAGGTAGGGGTAAATCTGTGGTTTGCGAGGCTGTTATCAAGGGAGACATAGTGTCGAAGGTGTTGAAAACCAACGTCGCAGCCTTGGTGGAGCTTAACATGCTCAAGAACCTTACTGGATCCGCTGTCGCTGGTGCTCTTGGTGGTTTCAATGCACATGCCAGTAACATTGTTTCAGCTGTCTACCTTGCCACTGGTCAAGACCCGGCTCAAAATATTGAGAGTTCTCACTGTATCACCATGATGGAAGCCATCAATGATGGCAAGGATCTTCACGTCTCTGTCACCATGCCATCCATTGAGGTCGGTACAGTAGGAGGAGGGACTCAACTTGCATCTCAATCAGCTTGTCTGAACCTGCTTGGTGTGAAGGGTGCTAACAGAGAGGCACCGGGAACAAACGCAAGACAGTTGGCCAGCGTTGTAGCTGGTTCTGTTCTTGCCGGAGAGCTCTCTCTCATGTCTGCAATTGCTGCTGGACAACTCGTTAAGAGCCACATGAAGTACAATAGATCTAACAAAGATGTCACAACGGTTGCTTCCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

597

Amino Acids

63.98

Weight (kDa)

6.25

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	210 - 586	3.8e-145	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1184
AatII	GACGTC	1 cut(s)	105
Acc36I	ACCTGC	2 cut(s)	1234, 1611
Acc65I	GGTACC	1 cut(s)	827
AccB1I	GGYRCC	2 cut(s)	827, 1633
AccI	GTMKAC	4 cut(s)	87, 183, 1036, 1428
AciI	CCGC	5 cut(s)	217, 527, 954, 1368, 1788
AclI	AACGTT	1 cut(s)	1146
AclWI	GGATC	5 cut(s)	208, 1250, 1359, 1372, 1521
AcoI	YGGCCR	3 cut(s)	418, 813, 1659
AcuI	CTGAAG	3 cut(s)	501, 558, 843
AcyI	GRCGYC	2 cut(s)	102, 120
AfaI	GTAC	6 cut(s)	140, 829, 844, 1079, 1555, 1751
AfiI	CCNNNNNNNGG	4 cut(s)	692, 1065, 1180, 1239
AgsI	TTSAA	9 cut(s)	67, 901, 937, 964, 1015, 1043, 1142, 1312, 1396
AhdI	GACNNNNNGTC	1 cut(s)	1297
AjiI	CACGTC	1 cut(s)	1522
AjnI	CCWGG	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	6 cut(s)	140, 172, 318, 350, 723, 755
Alw21I	GWGCWC	4 cut(s)	39, 922, 1384, 1698
Alw26I	GTCTC	6 cut(s)	515, 593, 675, 1132, 1284, 1528
AlwI	GGATC	5 cut(s)	208, 1250, 1359, 1372, 1521
Ama87I	CYCGRG	2 cut(s)	299, 596
AoxI	GGCC	6 cut(s)	360, 418, 423, 773, 813, 1659
ApeKI	GCWGC	8 cut(s)	473, 485, 626, 726, 1095, 1229, 1325, 1718
Asp700I	GAANNNNTTC	2 cut(s)	968, 1169
Asp718I	GGTACC	1 cut(s)	827
AspS9I	GGNCC	3 cut(s)	360, 424, 773
AsuC2I	CCSGG	2 cut(s)	1451, 1638
AsuHPI	GGTGA	4 cut(s)	456, 1115, 1474, 1522
AvaI	CYCGRG	2 cut(s)	299, 596
BaeI	ACNNNNGTAYC	2 cut(s)	819, 852
BalI	TGGCCA	3 cut(s)	420, 815, 1661
BamHI	GGATCC	1 cut(s)	1364
BanI	GGYRCC	2 cut(s)	827, 1633
BanII	GRGCYC	2 cut(s)	922, 1698
BarI	GAAGNNNNNNTAC	2 cut(s)	1061, 1093
BbsI	GAAGAC	3 cut(s)	549, 984, 1003
Bbv12I	GWGCWC	4 cut(s)	39, 922, 1384, 1698
BbvI	GCAGC	8 cut(s)	460, 472, 638, 713, 1107, 1216, 1337, 1705
BccI	CCATC	7 cut(s)	782, 899, 1007, 1483, 1499, 1505, 1546
BceAI	ACGGC	2 cut(s)	1043, 1217
BciT130I	CCWGG	1 cut(s)	422
BcnI	CCSGG	2 cut(s)	1451, 1638
BcoDI	GTCTC	6 cut(s)	515, 593, 675, 1132, 1284, 1528
BfaI	CTAG	4 cut(s)	269, 674, 840, 1023
BfuAI	ACCTGC	2 cut(s)	1234, 1611
BglII	AGATCT	1 cut(s)	1757
BisI	GCNGC	9 cut(s)	474, 486, 627, 727, 954, 1096, 1230, 1326, 1719
BlsI	GCNGC	9 cut(s)	475, 487, 628, 728, 955, 1097, 1231, 1327, 1720
Bme1390I	CCNGG	3 cut(s)	422, 1451, 1638
BmeRI	GACNNNNNGTC	1 cut(s)	1297
BmeT110I	CYCGRG	2 cut(s)	299, 596
BmgBI	CACGTC	1 cut(s)	1522
BmgT120I	GGNCC	3 cut(s)	360, 424, 773
BmiI	GGNNCC	5 cut(s)	453, 577, 829, 1366, 1635
BmrFI	CCNGG	3 cut(s)	422, 1451, 1638
BmsI	GCATC	4 cut(s)	122, 388, 1096, 1589
BpiI	GAAGAC	3 cut(s)	549, 984, 1003
BpmI	CTGGAG	2 cut(s)	323, 1145
BpuEI	CTTGAG	2 cut(s)	374, 1334
BpuMI	CCSGG	2 cut(s)	1451, 1638
Bsa29I	ATCGAT	1 cut(s)	315
BsaHI	GRCGYC	2 cut(s)	102, 120
BsaI	GGTCTC	2 cut(s)	515, 1132
BsaJI	CCNNGG	5 cut(s)	298, 810, 831, 850, 1329
BsaXI	ACNNNNNCTCC	6 cut(s)	211, 241, 904, 934, 1281, 1311
Bsc4I	CCNNNNNNNGG	4 cut(s)	692, 1065, 1180, 1239
Bse1I	ACTGG	8 cut(s)	667, 737, 888, 1105, 1244, 1366, 1407, 1444
Bse3DI	GCAATG	3 cut(s)	355, 456, 519
BseBI	CCWGG	1 cut(s)	422
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	5 cut(s)	298, 810, 831, 850, 1329
BseGI	GGATG	4 cut(s)	403, 1122, 1189, 1538
BseLI	CCNNNNNNNGG	4 cut(s)	692, 1065, 1180, 1239
BseMI	GCAATG	3 cut(s)	355, 456, 519
BseMII	CTCAG	3 cut(s)	243, 816, 1227
BseNI	ACTGG	8 cut(s)	667, 737, 888, 1105, 1244, 1366, 1407, 1444
BseRI	GAGGAG	5 cut(s)	219, 287, 392, 518, 1578
BseXI	GCAGC	8 cut(s)	460, 472, 638, 713, 1107, 1216, 1337, 1705
BseYI	CCCAGC	3 cut(s)	344, 770, 1064
BshFI	GGCC	6 cut(s)	362, 420, 425, 775, 815, 1661
BshNI	GGYRCC	2 cut(s)	827, 1633
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	4 cut(s)	39, 922, 1384, 1698
BsiHKCI	CYCGRG	2 cut(s)	299, 596
BsiSI	CCGG	3 cut(s)	1451, 1637, 1689
BslFI	GGGAC	1 cut(s)	1582
BslI	CCNNNNNNNGG	4 cut(s)	692, 1065, 1180, 1239
BsmAI	GTCTC	6 cut(s)	515, 593, 675, 1132, 1284, 1528
BsmBI	CGTCTC	1 cut(s)	1528
BsmFI	GGGAC	1 cut(s)	1582
BsnI	GGCC	6 cut(s)	362, 420, 425, 775, 815, 1661
Bso31I	GGTCTC	2 cut(s)	515, 1132
BsoBI	CYCGRG	2 cut(s)	299, 596
Bsp1286I	GDGCHC	4 cut(s)	39, 922, 1384, 1698
Bsp1407I	TGTACA	1 cut(s)	1077
Bsp143I	GATC	9 cut(s)	23, 213, 255, 516, 552, 1242, 1364, 1513, 1757
Bsp19I	CCATGG	1 cut(s)	810
BspACI	CCGC	5 cut(s)	217, 527, 954, 1368, 1788
BspANI	GGCC	6 cut(s)	362, 420, 425, 775, 815, 1661
BspCNI	CTCAG	3 cut(s)	244, 815, 1226
BspDI	ATCGAT	1 cut(s)	315
BspLI	GGNNCC	5 cut(s)	453, 577, 829, 1366, 1635
BspMI	ACCTGC	2 cut(s)	1234, 1611
BspPI	GGATC	5 cut(s)	208, 1250, 1359, 1372, 1521
BspT107I	GGYRCC	2 cut(s)	827, 1633
BspTNI	GGTCTC	2 cut(s)	515, 1132
BsrDI	GCAATG	3 cut(s)	355, 456, 519
BsrGI	TGTACA	1 cut(s)	1077
BsrI	ACTGG	8 cut(s)	667, 737, 888, 1105, 1244, 1366, 1407, 1444
BssECI	CCNNGG	5 cut(s)	298, 810, 831, 850, 1329
BssMI	GATC	9 cut(s)	23, 213, 255, 516, 552, 1242, 1364, 1513, 1757
BssNI	GRCGYC	2 cut(s)	102, 120
BssT1I	CCWWGG	3 cut(s)	810, 831, 1329
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	6 cut(s)	798, 851, 1478, 1558, 1656, 1780
Bst6I	CTCTTC	1 cut(s)	543
BstACI	GRCGYC	2 cut(s)	102, 120
BstAPI	GCANNNNNTGC	2 cut(s)	569, 1718
BstAUI	TGTACA	1 cut(s)	1077
BstC8I	GCNNGC	5 cut(s)	55, 59, 203, 403, 1663
BstDEI	CTNAG	3 cut(s)	252, 802, 1213
BstDSI	CCRYGG	2 cut(s)	810, 850
BstF5I	GGATG	4 cut(s)	403, 1122, 1189, 1538
BstKTI	GATC	9 cut(s)	26, 216, 258, 519, 555, 1245, 1367, 1516, 1760
BstMAI	GTCTC	6 cut(s)	515, 593, 675, 1132, 1284, 1528
BstMBI	GATC	9 cut(s)	23, 213, 255, 516, 552, 1242, 1364, 1513, 1757
BstNI	CCWGG	1 cut(s)	422
BstNSI	RCATGY	2 cut(s)	1348, 1406
BstSCI	CCNGG	3 cut(s)	420, 1449, 1636
BstV1I	GCAGC	8 cut(s)	460, 472, 638, 713, 1107, 1216, 1337, 1705
BstV2I	GAAGAC	3 cut(s)	549, 984, 1003
BstX2I	RGATCY	4 cut(s)	213, 1364, 1513, 1757
BstXI	CCANNNNNNTGG	1 cut(s)	1006
BstYI	RGATCY	4 cut(s)	213, 1364, 1513, 1757
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	6 cut(s)	362, 420, 425, 775, 815, 1661
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	2 cut(s)	810, 850
BtrI	CACGTC	1 cut(s)	1522
BtsCI	GGATG	4 cut(s)	403, 1122, 1189, 1538
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	6 cut(s)	570, 819, 895, 1098, 1437, 1474
BveI	ACCTGC	2 cut(s)	1234, 1611
Cac8I	GCNNGC	5 cut(s)	55, 59, 203, 403, 1663
Cfr13I	GGNCC	3 cut(s)	360, 424, 773
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	6 cut(s)	139, 828, 843, 1078, 1554, 1750
CviQI	GTAC	6 cut(s)	139, 828, 843, 1078, 1554, 1750
DdeI	CTNAG	3 cut(s)	252, 802, 1213
DpnI	GATC	9 cut(s)	25, 215, 257, 518, 554, 1244, 1366, 1515, 1759
DpnII	GATC	9 cut(s)	23, 213, 255, 516, 552, 1242, 1364, 1513, 1757
DrdI	GACNNNNNNGTC	1 cut(s)	1184
DriI	GACNNNNNGTC	1 cut(s)	1297
DseDI	GACNNNNNNGTC	1 cut(s)	1184
EaeI	YGGCCR	3 cut(s)	418, 813, 1659
Eam1104I	CTCTTC	1 cut(s)	543
Eam1105I	GACNNNNNGTC	1 cut(s)	1297
EarI	CTCTTC	1 cut(s)	543
Ecl136II	GAGCTC	2 cut(s)	920, 1696
Eco130I	CCWWGG	3 cut(s)	810, 831, 1329
Eco24I	GRGCYC	2 cut(s)	922, 1698
Eco31I	GGTCTC	2 cut(s)	515, 1132
Eco53kI	GAGCTC	2 cut(s)	920, 1696
Eco57I	CTGAAG	3 cut(s)	501, 558, 843
Eco88I	CYCGRG	2 cut(s)	299, 596
EcoICRI	GAGCTC	2 cut(s)	920, 1696
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	3 cut(s)	810, 831, 1329
EcoT38I	GRGCYC	2 cut(s)	922, 1698
ErhI	CCWWGG	3 cut(s)	810, 831, 1329
Esp3I	CGTCTC	1 cut(s)	1528
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FaqI	GGGAC	1 cut(s)	1582
FauI	CCCGC	1 cut(s)	534
FblI	GTMKAC	4 cut(s)	87, 183, 1036, 1428
Fnu4HI	GCNGC	9 cut(s)	474, 486, 627, 727, 954, 1096, 1230, 1326, 1719
FokI	GGATG	4 cut(s)	410, 1129, 1196, 1525
FriOI	GRGCYC	2 cut(s)	922, 1698
Fsp4HI	GCNGC	9 cut(s)	474, 486, 627, 727, 954, 1096, 1230, 1326, 1719
FspBI	CTAG	4 cut(s)	269, 674, 840, 1023
GluI	GCNGC	9 cut(s)	474, 486, 627, 727, 954, 1096, 1230, 1326, 1719
GsaI	CCCAGC	3 cut(s)	348, 774, 1068
GsuI	CTGGAG	2 cut(s)	323, 1145
HaeIII	GGCC	6 cut(s)	362, 420, 425, 775, 815, 1661
HapII	CCGG	3 cut(s)	1451, 1637, 1689
HgaI	GACGC	1 cut(s)	128
Hin1I	GRCGYC	2 cut(s)	102, 120
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	3 cut(s)	707, 933, 1570
HpaII	CCGG	3 cut(s)	1451, 1637, 1689
HphI	GGTGA	4 cut(s)	456, 1115, 1474, 1522
Hpy166II	GTNNAC	5 cut(s)	88, 184, 1037, 1237, 1429
Hpy188I	TCNGA	6 cut(s)	17, 118, 253, 932, 1216, 1599
Hpy188III	TCNNGA	9 cut(s)	106, 479, 520, 598, 674, 1151, 1162, 1351, 1445
Hpy8I	GTNNAC	5 cut(s)	88, 184, 1037, 1237, 1429
Hpy99I	CGWCG	5 cut(s)	34, 89, 107, 182, 1325
HpyCH4III	ACNGT	6 cut(s)	798, 851, 1478, 1558, 1656, 1780
HpyCH4IV	ACGT	4 cut(s)	102, 1146, 1320, 1521
HpyCH4V	TGCA	6 cut(s)	618, 858, 1095, 1400, 1580, 1712
HpyF3I	CTNAG	3 cut(s)	252, 802, 1213
HpySE526I	ACGT	4 cut(s)	102, 1146, 1320, 1521
Hsp92I	GRCGYC	2 cut(s)	102, 120
KpnI	GGTACC	1 cut(s)	831
Kzo9I	GATC	9 cut(s)	23, 213, 255, 516, 552, 1242, 1364, 1513, 1757
LmnI	GCTCC	6 cut(s)	34, 457, 481, 881, 925, 1336
Lsp1109I	GCAGC	8 cut(s)	460, 472, 638, 713, 1107, 1216, 1337, 1705
LweI	GCATC	4 cut(s)	122, 388, 1096, 1589
MaeI	CTAG	4 cut(s)	269, 674, 840, 1023
MaeII	ACGT	4 cut(s)	102, 1146, 1320, 1521
MaeIII	GTNAC	5 cut(s)	658, 1202, 1409, 1528, 1771
MalI	GATC	9 cut(s)	25, 215, 257, 518, 554, 1244, 1366, 1515, 1759
MboI	GATC	9 cut(s)	23, 213, 255, 516, 552, 1242, 1364, 1513, 1757
MfeI	CAATTG	2 cut(s)	430, 1713
MflI	RGATCY	4 cut(s)	213, 1364, 1513, 1757
MhlI	GDGCHC	4 cut(s)	39, 922, 1384, 1698
MlsI	TGGCCA	3 cut(s)	420, 815, 1661
MluCI	AATT	4 cut(s)	430, 438, 959, 1713
MluNI	TGGCCA	3 cut(s)	420, 815, 1661
MlyI	GAGTC	2 cut(s)	716, 1564
MmeI	TCCRAC	1 cut(s)	721
Mox20I	TGGCCA	3 cut(s)	420, 815, 1661
MroXI	GAANNNNTTC	2 cut(s)	968, 1169
MscI	TGGCCA	3 cut(s)	420, 815, 1661
MseI	TTAA	3 cut(s)	1050, 1341, 1734
MslI	CAYNNNNRTG	2 cut(s)	1004, 1487
Msp20I	TGGCCA	3 cut(s)	420, 815, 1661
MspA1I	CMGCKG	3 cut(s)	956, 1370, 1424
MspI	CCGG	3 cut(s)	1451, 1637, 1689
MspR9I	CCNGG	3 cut(s)	422, 1451, 1638
MunI	CAATTG	2 cut(s)	430, 1713
MvaI	CCWGG	1 cut(s)	422
NciI	CCSGG	2 cut(s)	1451, 1638
NcoI	CCATGG	1 cut(s)	810
NdeII	GATC	9 cut(s)	23, 213, 255, 516, 552, 1242, 1364, 1513, 1757
NlaIV	GGNNCC	5 cut(s)	453, 577, 829, 1366, 1635
NmuCI	GTSAC	2 cut(s)	1528, 1771
NspI	RCATGY	2 cut(s)	1348, 1406
PaeR7I	CTCGAG	1 cut(s)	596
PdmI	GAANNNNTTC	2 cut(s)	968, 1169
PfeI	GAWTC	1 cut(s)	933
PkrI	GCNGC	9 cut(s)	475, 487, 628, 728, 955, 1097, 1231, 1327, 1720
PleI	GAGTC	2 cut(s)	715, 1564
PpsI	GAGTC	2 cut(s)	715, 1564
Psp124BI	GAGCTC	2 cut(s)	922, 1698
Psp1406I	AACGTT	1 cut(s)	1146
Psp6I	CCWGG	1 cut(s)	420
PspFI	CCCAGC	3 cut(s)	344, 770, 1064
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	5 cut(s)	453, 577, 829, 1366, 1635
PspPI	GGNCC	3 cut(s)	360, 424, 773
PsrI	GAACNNNNNNTAC	2 cut(s)	1070, 1102
PsuI	RGATCY	4 cut(s)	213, 1364, 1513, 1757
PvuII	CAGCTG	1 cut(s)	1424
RsaI	GTAC	6 cut(s)	140, 829, 844, 1079, 1555, 1751
RsaNI	GTAC	6 cut(s)	139, 828, 843, 1078, 1554, 1750
RseI	CAYNNNNRTG	2 cut(s)	1004, 1487
SacI	GAGCTC	2 cut(s)	922, 1698
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	1050, 1341, 1734
SatI	GCNGC	9 cut(s)	474, 486, 627, 727, 954, 1096, 1230, 1326, 1719
Sau3AI	GATC	9 cut(s)	23, 213, 255, 516, 552, 1242, 1364, 1513, 1757
Sau96I	GGNCC	3 cut(s)	360, 424, 773
SchI	GAGTC	2 cut(s)	716, 1564
ScrFI	CCNGG	3 cut(s)	422, 1451, 1638
SduI	GDGCHC	4 cut(s)	39, 922, 1384, 1698
SfaNI	GCATC	4 cut(s)	122, 388, 1096, 1589
Sfr274I	CTCGAG	1 cut(s)	596
SlaI	CTCGAG	1 cut(s)	596
SmiMI	CAYNNNNRTG	2 cut(s)	1004, 1487
SmlI	CTYRAG	3 cut(s)	389, 596, 1349
SmoI	CTYRAG	3 cut(s)	389, 596, 1349
Sse9I	AATT	4 cut(s)	430, 438, 959, 1713
SsiI	CCGC	5 cut(s)	217, 527, 954, 1368, 1788
SspI	AATATT	1 cut(s)	1462
SspMI	CTAG	4 cut(s)	269, 674, 840, 1023
SstI	GAGCTC	2 cut(s)	922, 1698
StyD4I	CCNGG	3 cut(s)	420, 1449, 1636
StyI	CCWWGG	3 cut(s)	810, 831, 1329
TaaI	ACNGT	6 cut(s)	798, 851, 1478, 1558, 1656, 1780
TaiI	ACGT	4 cut(s)	105, 1149, 1323, 1524
TaqI	TCGA	8 cut(s)	87, 315, 519, 597, 699, 786, 1245, 1301
TasI	AATT	4 cut(s)	430, 438, 959, 1713
TatI	WGTACW	2 cut(s)	1077, 1749
TauI	GCSGC	1 cut(s)	956
TfiI	GAWTC	1 cut(s)	933
Tru1I	TTAA	3 cut(s)	1050, 1341, 1734
Tru9I	TTAA	3 cut(s)	1050, 1341, 1734
TscAI	CASTG	6 cut(s)	570, 826, 895, 1105, 1444, 1481
TseFI	GTSAC	2 cut(s)	1528, 1771
TseI	GCWGC	8 cut(s)	473, 485, 626, 726, 1095, 1229, 1325, 1718
Tsp45I	GTSAC	2 cut(s)	1528, 1771
TspDTI	ATGAA	7 cut(s)	86, 108, 277, 576, 961, 1133, 1760
TspGWI	ACGGA	2 cut(s)	47, 166
TspRI	CASTG	6 cut(s)	570, 826, 895, 1105, 1444, 1481
XbaI	TCTAGA	1 cut(s)	673
XceI	RCATGY	2 cut(s)	1348, 1406
XhoI	CTCGAG	1 cut(s)	596
XmiI	GTMKAC	4 cut(s)	87, 183, 1036, 1428
XmnI	GAANNNNTTC	2 cut(s)	968, 1169
XspI	CTAG	4 cut(s)	269, 674, 840, 1023
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.