Rorug06G0140200

A reductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
19813098 .. 19814961
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0140200.1

Sequence Viewer

Length: 852 bp
ATGATTTGGCTGCAGGCAGCAGGCAAAGGTCGAACAGGCTTAATGGTAAGCGCGTATCTAGTCTACTGGGGGATGTCAGCAGAGGAAGCGCTTCAACTCTGTGCTCATAGACGGACCGCCAATAATGAAGGAGTAAGTCTCGGTACCAAGCCATGCCAACGTCGTTACGTAGGGTACTGGGGAAATTGTCTTTCTTTCCCTTCGGAAGTCGATGATAAACCTCCTGAAGTCAACTTACCTCGGACGTGTAGCAGAGAATTACGAAGAACCCAATGTTATGAGACACTTAGCATTAATAAGATATTCTTTGTGGTCTCTGAGTTGCAAGAGATTCCGGTTCAGATTTATCGTCCATCAACAGAAGTTTCTAGGAGTTCATGCAAACAAATCAAGAAAGGGTATTCGAGAACGAGCAGTCCTCGCTATTATCTGTCTTTCATTGAAGGTGATGAAGAAGACAAGAAATCAGATTCAGACGAACCTCGTGTTGTTGTTCAAATGGATACAGAAAGTTCCATACTATACCAGAAGGCCTATCTTGAATATTACTTTGATAAGCCTGTACGGGTAACCGGAGATGTGCGTGTCATATTTTATCAAAAGATGAATGGAGGGCGTCTCTTCTATGCTTGCTTCAACACCGCTTTCATTAAGAACAGCTTGCTACAGGTATTGCCTTCTTTCCTGAAAACACCAGGAAACAAGAAGGTTCATAAAATAAAGCACGGAGTGAGGCGAATAGAACAGGGGAAGAAGAATGAAGAGGAAGAGCCTTCGGGATTCGAAATTCCAGGCGTTGTCGAGATTGTTATTCATTTGGAATGGAAGCTTATGGATTTTCAGGGAGGATGA

Protein Analysis

283

Amino Acids

32.53

Weight (kDa)

8.82

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTEN_C2 PF10409 173 - 226 2.4e-06 C2 domain of PTEN tumour-suppressor protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17370
fragaria_vesca FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica Prupe.8G182300_v2.0.a1
pyrus_communis pycom05g13820 pycom10g12350
rosa_chinensis RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 53
AciI CCGC 2 cut(s) 117, 642
AcsI RAATTY 1 cut(s) 786
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 616
AdeI CACNNNGTG 1 cut(s) 730
AfaI GTAC 3 cut(s) 145, 176, 564
AfeI AGCGCT 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 5 cut(s) 95, 443, 497, 542, 637
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 2 cut(s) 694, 790
AloI GAACNNNNNNTCC 2 cut(s) 400, 432
AluBI AGCT 2 cut(s) 660, 829
AluI AGCT 2 cut(s) 660, 829
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 4 cut(s) 143, 275, 319, 623
Aor51HI AGCGCT 1 cut(s) 90
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 2 cut(s) 10, 17
ApoI RAATTY 1 cut(s) 786
AseI ATTAAT 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 90
Asp718I GGTACC 1 cut(s) 143
AspLEI GCGC 2 cut(s) 53, 91
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 458
AsuII TTCGAA 1 cut(s) 783
AvaII GGWCC 1 cut(s) 114
BanI GGYRCC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
BauI CACGAG 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 361
BciT130I CCWGG 2 cut(s) 696, 792
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 4 cut(s) 143, 275, 319, 623
BfaI CTAG 2 cut(s) 59, 369
BfmI CTRYAG 2 cut(s) 11, 665
BfoI RGCGCY 1 cut(s) 92
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 2 cut(s) 11, 18
BlsI GCNGC 2 cut(s) 12, 19
Bme1390I CCNGG 2 cut(s) 696, 792
Bme18I GGWCC 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 696, 792
BmrI ACTGGG 2 cut(s) 76, 187
BmuI ACTGGG 2 cut(s) 76, 187
BpiI GAAGAC 1 cut(s) 462
BplI GAGNNNNNCTC 6 cut(s) 123, 155, 403, 435, 603, 635
Bpu14I TTCGAA 1 cut(s) 783
BsaAI YACGTR 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 616
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 239
BsaWI WCCGGW 2 cut(s) 334, 572
Bse1I ACTGG 2 cut(s) 71, 182
BseBI CCWGG 2 cut(s) 696, 792
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 71, 182
BseXI GCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 1 cut(s) 533
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 2 cut(s) 335, 573
BsmAI GTCTC 4 cut(s) 143, 275, 319, 623
BsmBI CGTCTC 1 cut(s) 623
BsnI GGCC 1 cut(s) 533
Bso31I GGTCTC 1 cut(s) 319
Bsp119I TTCGAA 1 cut(s) 783
Bsp1286I GDGCHC 1 cut(s) 106
BspACI CCGC 2 cut(s) 117, 642
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 762
BspT104I TTCGAA 1 cut(s) 783
BspT107I GGYRCC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 319
BsrI ACTGG 2 cut(s) 71, 182
BssECI CCNNGG 1 cut(s) 239
BssNI GRCGYC 1 cut(s) 616
BssSI CACGAG 1 cut(s) 483
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 2 cut(s) 696, 792
Bst6I CTCTTC 3 cut(s) 626, 756, 762
BstACI GRCGYC 1 cut(s) 616
BstBAI YACGTR 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 783
BstC8I GCNNGC 4 cut(s) 15, 22, 631, 662
BstDEI CTNAG 2 cut(s) 287, 318
BstEII GGTNACC 1 cut(s) 568
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 2 cut(s) 53, 91
BstMAI GTCTC 4 cut(s) 143, 275, 319, 623
BstMWI GCNNNNNNNGC 2 cut(s) 86, 420
BstNI CCWGG 2 cut(s) 696, 792
BstPI GGTNACC 1 cut(s) 568
BstSCI CCNGG 2 cut(s) 694, 790
BstSFI CTRYAG 2 cut(s) 11, 665
BstSNI TACGTA 1 cut(s) 169
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 462
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 1 cut(s) 533
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 78
Cac8I GCNNGC 4 cut(s) 15, 22, 631, 662
CfoI GCGC 2 cut(s) 53, 91
Cfr13I GGNCC 1 cut(s) 114
CpoI CGGWCCG 1 cut(s) 114
CseI GACGC 1 cut(s) 605
Csp6I GTAC 3 cut(s) 144, 175, 563
CspI CGGWCCG 1 cut(s) 114
CviAII CATG 2 cut(s) 153, 378
CviJI RGCY 8 cut(s) 10, 39, 151, 533, 559, 660, 772, 829
CviKI_1 RGCY 8 cut(s) 10, 39, 151, 533, 559, 660, 772, 829
CviQI GTAC 3 cut(s) 144, 175, 563
DdeI CTNAG 2 cut(s) 287, 318
DraIII CACNNNGTG 1 cut(s) 730
Eam1104I CTCTTC 3 cut(s) 626, 756, 762
EarI CTCTTC 3 cut(s) 626, 756, 762
Eco105I TACGTA 1 cut(s) 169
Eco147I AGGCCT 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 114
Eco47III AGCGCT 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 246
Eco91I GGTNACC 1 cut(s) 568
EcoO65I GGTNACC 1 cut(s) 568
EcoRII CCWGG 2 cut(s) 694, 790
Esp3I CGTCTC 1 cut(s) 623
FaeI CATG 2 cut(s) 156, 381
FalI AAGNNNNNCTT 4 cut(s) 290, 322, 644, 676
FatI CATG 2 cut(s) 152, 377
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 11, 18
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 11, 18
FspBI CTAG 2 cut(s) 59, 369
GlaI GCGC 2 cut(s) 52, 90
GluI GCNGC 2 cut(s) 11, 18
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 1 cut(s) 533
HapII CCGG 2 cut(s) 335, 573
HgaI GACGC 1 cut(s) 605
HhaI GCGC 2 cut(s) 53, 91
Hin1I GRCGYC 1 cut(s) 616
Hin1II CATG 2 cut(s) 156, 381
Hin6I GCGC 2 cut(s) 51, 89
HinP1I GCGC 2 cut(s) 51, 89
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 3 cut(s) 331, 470, 780
HpaII CCGG 2 cut(s) 335, 573
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 2 cut(s) 64, 232
Hpy188I TCNGA 6 cut(s) 205, 243, 319, 342, 469, 475
Hpy188III TCNNGA 7 cut(s) 224, 391, 405, 539, 685, 777, 802
Hpy8I GTNNAC 2 cut(s) 64, 232
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 7 cut(s) 122, 210, 437, 523, 687, 700, 783
HpyCH4IV ACGT 3 cut(s) 160, 168, 245
HpyCH4V TGCA 3 cut(s) 13, 325, 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 420
HpyF3I CTNAG 2 cut(s) 287, 318
HpySE526I ACGT 3 cut(s) 160, 168, 245
Hsp92I GRCGYC 1 cut(s) 616
Hsp92II CATG 2 cut(s) 156, 381
HspAI GCGC 2 cut(s) 51, 89
KpnI GGTACC 1 cut(s) 147
LguI GCTCTTC 1 cut(s) 762
Lsp1109I GCAGC 1 cut(s) 29
MaeI CTAG 2 cut(s) 59, 369
MaeII ACGT 3 cut(s) 160, 168, 245
MaeIII GTNAC 2 cut(s) 164, 568
MboII GAAGA 8 cut(s) 276, 464, 467, 613, 763, 766, 773, 779
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 3 cut(s) 184, 257, 786
MnlI CCTC 9 cut(s) 76, 231, 249, 429, 492, 605, 726, 757, 839
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 3 cut(s) 41, 294, 651
MspI CCGG 2 cut(s) 335, 573
MspR9I CCNGG 2 cut(s) 696, 792
MvaI CCWGG 2 cut(s) 696, 792
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 86, 420
NlaIII CATG 2 cut(s) 156, 381
NlaIV GGNNCC 1 cut(s) 145
NspV TTCGAA 1 cut(s) 783
PceI AGGCCT 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 762
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 3 cut(s) 331, 470, 780
PkrI GCNGC 2 cut(s) 12, 19
Ppu21I YACGTR 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 694, 790
PspEI GGTNACC 1 cut(s) 568
PspGI CCWGG 2 cut(s) 694, 790
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 114
PstI CTGCAG 1 cut(s) 15
RsaI GTAC 3 cut(s) 145, 176, 564
RsaNI GTAC 3 cut(s) 144, 175, 563
Rsr2I CGGWCCG 1 cut(s) 114
RsrII CGGWCCG 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 3 cut(s) 41, 294, 651
SatI GCNGC 2 cut(s) 11, 18
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 696, 792
SduI GDGCHC 1 cut(s) 106
SfcI CTRYAG 2 cut(s) 11, 665
SfuI TTCGAA 1 cut(s) 783
SinI GGWCC 1 cut(s) 114
SnaBI TACGTA 1 cut(s) 169
Sse9I AATT 3 cut(s) 184, 257, 786
SseBI AGGCCT 1 cut(s) 533
SsiI CCGC 2 cut(s) 117, 642
SspI AATATT 1 cut(s) 545
SspMI CTAG 2 cut(s) 59, 369
StuI AGGCCT 1 cut(s) 533
StyD4I CCNGG 2 cut(s) 694, 790
TaiI ACGT 3 cut(s) 163, 171, 248
TaqI TCGA 5 cut(s) 31, 210, 404, 783, 801
TasI AATT 3 cut(s) 184, 257, 786
TfiI GAWTC 3 cut(s) 331, 470, 780
Tru1I TTAA 3 cut(s) 41, 294, 651
Tru9I TTAA 3 cut(s) 41, 294, 651
TseI GCWGC 2 cut(s) 10, 17
TspDTI ATGAA 9 cut(s) 141, 366, 427, 465, 620, 637, 701, 774, 803
TspGWI ACGGA 2 cut(s) 127, 741
VpaK11BI GGWCC 1 cut(s) 114
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 786
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 2 cut(s) 59, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.