Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Forward (+)

24541574 .. 24544921

Gene Structure 3348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012974

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGCATGGCGGCTTTAGCTTTAAAGGTGATCGTACCAGCCCGTCCCTCCCTCGTGCACCTTTTGGAGTGAAAGATGCTACCAAAGTGCGCAAACCATTGGTTATTAGAAAAGAAAAGAGCATTGTTTTGGAGAAGGAGAGAAATTCACAACCTTTGGTTCCGATTGATACAAATATTGAGCGTAAGGAGGTTGTAGAGCTTATACCATCTGAGGGTATGAGTACAATGCAGACAGGGGACTCTGTAGTTGTGAATGCACATCAAATACTAGATGCGACTGTTTGTGTCAACCAGGAGACAATTAATGTGATTGATAAACACAGGGAAGTTGAGAAACAGGTTGATGACACTGCTGATGTAGATGGCTTGCCTGTGGCACCGGTTCTGGCAGCTAATACGGTGCCGGAATTTGAAGCTAATACAGTGCAGCAAGTTAAAGAAGGCCGGATTGTGGCTACTCGAGTTGATAAAAGGGGTAGGCCTTCTTGTCCTACTGTATCTCCTAAGAAGTTCAAACCGGGAAGTATTGAGTTGTTTCCTAGCCCCATGGATGAGGATATCCCTATCAAAAAGCTGAAGATGCTAATTAAGTTTACTGCCAAAGCCCTGGGACTACAGGCAGCACCGGGGGGGGCTCCTAGTTTCAAAGCAAACTCCTCTACAGATTATGGCTGGAGATCAGCGATGGAGCACAACACCAAGTCAGGCAAGCCTTCGAAAATGAAAGTCAAGTTTGCCGACGATGAAGCCGTAAAGGTTTCAGAGGCCTTGCCTCTGCCTCTTTACATAACCAACGCAGTGTTCTTCACTCTATTCTTTTCCGTTGTCTACTTCTTGCTCACAAGCTGGCGTGAGAAGATCCGCACCAATACTCCTCTTCACATCGTCAGTCTCGGAGAGATTGTGGCCGTTCTAGCCTTCGTCGCATCCTTCACCTACCTCCTCGGCTTCTTTGGTATCGATTTCGTTGAGTCCCACATTCTCCAGCCCAGCAATGACATCTGGGCCGCCGATGATGACGAGGAAGAGATTATTCTCAAGGAGGATGCTCGCAAAATCCCTTGTGGCCAGGCCATTGATTGTTCAATTCCCAAAATGTCTCCGATTGCTTCACCAAAAGCTGCTCCAAAAGTATTTGAAGAAAAGGCAAAGATCGAGACACCACCACCAGCTGAAGGAGACGAAGAGATTATAAAGGCAGTGGTTGCCGGAACCATTCCTTCATACTCACTCGAGTCAAAGCTTGGCGACTGCAAGAGGGCAGCTTCTATTAGGCGTGAGGCTTTGCAGAGAGTTACAGGCAAGTCTTTGGAGGGTTTGCCTTTGGAAGGCTTTGATTACGAGTCCATCTTGGGTCAATGTTGCGAAATGCCAGTTGGGTATATTACCATTCCAGTTGGGATTGCTGGGCCTCTCATGCTTGATGGAAGAGAGTTCTCAGTTCCTATGGCCACAACTGAAGGTTGCTTGGTGGCCAGTACCAACCGCGGTTGCAAGGCTATCAACTTGTCTGGTGGAGCTTCAAGTGTGCTATTGAAAGATGGAATGACCAGAGCTCCTGTTGTCAGATTCAACTCTGCTAAAAGAGCTGCTGAGTTGAAGTTCTTCATGGAAGACCCTGCCAATTATGAAACCATTTCCATGGTTTTCAACAAATCAAGCCGATTCGGTAGACTTCAGACAGTCAAGTGTGCCGTTGCTGGGAAGAACCTGTACATGAGATTCTGCTGCAGCACCGGTGATGCCATGGGGATGAACATGGTCTCTAAAGGTGTTCAAAACGTTCTTGATTTCCTCCAGAATGACTTCCCTGACATGGATGTCATTGGCATTTCTGGTAACTACTGCTCAGACAAAAAGCCTGCTGCAGTTAACTGGATTGAAGGCCGCGGCAAATCTGTGGTTTGTGAGGCTGTGATCAAGGGAGACATAGTGACGAAGGTGTTGAAAACCAACGTGGCGGCCTTGGTGGAGCTTAACATGCTCAAGAACCTTACTGGTTCTGCCATCGCTGGTGCTCTTGGTGGGTTCAATGCTCATGCCAGTAACATTGTTTCTGCAGTCTACCTTGCAACGGGCCAAGACCCTGCTCAGAACATTGAGAGTTCTCACTGCATCACCATGATGGAAGCCATCAATAATGGAAAGGATCTTCACGTCTCTGTAACCATGCCTTCTATTGAAGTTGGTACAGTAGGAGGAGGTACCCAACTTGCATCGCAGTCGGCTTGTTTGAACTTGCTTGGAGTGAAGGGTGCTAACAGAGAGGCACCAGGATCAAACGCTAGGCAGTTAGCTAGTGTTGTAGCTGGTTCTGTTCTTGCTGGAGAGCTATCTCTGATGTCAGCTATTGCAGCTGGACAACTTGTTAAGAGCCACATGAAGTACAATAGATCAAACAAAGATGTAACAACTGTTACTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

810

Amino Acids

86.85

Weight (kDa)

7.46

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	422 - 798	2.4e-144	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1193
AasI	GACNNNNNNGTC	1 cut(s)	1820
Acc16I	TGCGCA	1 cut(s)	89
Acc65I	GGTACC	1 cut(s)	2204
AccB1I	GGYRCC	4 cut(s)	376, 400, 2204, 2269
AccI	GTMKAC	3 cut(s)	828, 1672, 2064
AccII	CGCG	2 cut(s)	1488, 1890
AciI	CCGC	8 cut(s)	9, 862, 1008, 1486, 1488, 1888, 1890, 1961
AclI	AACGTT	1 cut(s)	1782
AclWI	GGATC	3 cut(s)	853, 2157, 2284
AcoI	YGGCCR	4 cut(s)	906, 1066, 1449, 1473
AcsI	RAATTY	2 cut(s)	142, 407
AcuI	CTGAAG	4 cut(s)	596, 1194, 1479, 1661
AfaI	GTAC	7 cut(s)	34, 223, 1480, 1715, 2191, 2206, 2387
AfiI	CCNNNNNNNGG	7 cut(s)	212, 451, 1175, 1328, 1701, 1816, 2074
AgeI	ACCGGT	2 cut(s)	379, 1736
AjiI	CACGTC	1 cut(s)	2158
AjnI	CCWGG	4 cut(s)	291, 606, 1068, 2272
AjuI	GAANNNNNNNTTGG	4 cut(s)	785, 817, 1359, 1391
Alw21I	GWGCWC	4 cut(s)	58, 693, 1558, 2020
Alw26I	GTCTC	8 cut(s)	290, 896, 1104, 1151, 1173, 1768, 1920, 2164
Alw44I	GTGCAC	1 cut(s)	54
AlwI	GGATC	3 cut(s)	853, 2157, 2284
Ama87I	CYCGRG	2 cut(s)	459, 1232
ApaLI	GTGCAC	1 cut(s)	54
ApoI	RAATTY	2 cut(s)	142, 407
AseI	ATTAAT	1 cut(s)	303
AsiGI	ACCGGT	2 cut(s)	379, 1736
Asp700I	GAANNNNTTC	2 cut(s)	1604, 1805
Asp718I	GGTACC	1 cut(s)	2204
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	3 cut(s)	1005, 1409, 2077
AsuC2I	CCSGG	2 cut(s)	519, 627
AsuHPI	GGTGA	5 cut(s)	38, 925, 1104, 1751, 2110
AsuII	TTCGAA	1 cut(s)	716
AvaI	CYCGRG	2 cut(s)	459, 1232
BaeGI	GKGCMC	1 cut(s)	58
BalI	TGGCCA	3 cut(s)	1068, 1451, 1475
BanI	GGYRCC	4 cut(s)	376, 400, 2204, 2269
BanII	GRGCYC	2 cut(s)	637, 1558
BarI	GAAGNNNNNNTAC	2 cut(s)	1697, 1729
BauI	CACGAG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	1620
Bbv12I	GWGCWC	4 cut(s)	58, 693, 1558, 2020
BccI	CCATC	9 cut(s)	214, 356, 679, 1355, 1418, 1535, 2015, 2119, 2141
BceAI	ACGGC	3 cut(s)	734, 893, 1679
BcgI	CGANNNNNNTGC	2 cut(s)	2205, 2239
BciT130I	CCWGG	4 cut(s)	293, 608, 1070, 2274
BclI	TGATCA	1 cut(s)	1917
BcnI	CCSGG	2 cut(s)	519, 627
BcoDI	GTCTC	8 cut(s)	290, 896, 1104, 1151, 1173, 1768, 1920, 2164
BfaI	CTAG	6 cut(s)	269, 540, 639, 914, 2286, 2298
BfmI	CTRYAG	6 cut(s)	243, 614, 660, 1729, 1866, 2058
Bme1390I	CCNGG	6 cut(s)	293, 519, 608, 627, 1070, 2274
BmeT110I	CYCGRG	2 cut(s)	459, 1232
BmgBI	CACGTC	1 cut(s)	2158
BmgT120I	GGNCC	3 cut(s)	1005, 1409, 2077
BmiI	GGNNCC	7 cut(s)	159, 378, 402, 636, 1213, 2206, 2271
BmrFI	CCNGG	6 cut(s)	293, 519, 608, 627, 1070, 2274
BmsI	GCATC	8 cut(s)	64, 262, 570, 935, 1036, 1732, 2124, 2225
BpiI	GAAGAC	1 cut(s)	1620
BpmI	CTGGAG	4 cut(s)	694, 968, 1781, 2346
Bpu14I	TTCGAA	1 cut(s)	716
BpuEI	CTTGAG	2 cut(s)	1022, 1970
BpuMI	CCSGG	2 cut(s)	519, 627
Bsa29I	ATCGAT	1 cut(s)	960
BsaI	GGTCTC	1 cut(s)	1768
BsaWI	WCCGGW	2 cut(s)	379, 1736
Bsc4I	CCNNNNNNNGG	7 cut(s)	212, 451, 1175, 1328, 1701, 1816, 2074
Bse118I	RCCGGY	2 cut(s)	379, 1736
Bse1I	ACTGG	6 cut(s)	1373, 1394, 1476, 1880, 2002, 2043
Bse3DI	GCAATG	1 cut(s)	1000
BseBI	CCWGG	4 cut(s)	293, 608, 1070, 2274
BseCI	ATCGAT	1 cut(s)	960
BseGI	GGATG	5 cut(s)	556, 926, 1051, 1758, 1825
BseLI	CCNNNNNNNGG	7 cut(s)	212, 451, 1175, 1328, 1701, 1816, 2074
BseMI	GCAATG	1 cut(s)	1000
BseMII	CTCAG	5 cut(s)	201, 1452, 1584, 1863, 2105
BseNI	ACTGG	6 cut(s)	1373, 1394, 1476, 1880, 2002, 2043
BseRI	GAGGAG	4 cut(s)	646, 864, 932, 2214
BseSI	GKGCMC	1 cut(s)	58
BseYI	CCCAGC	3 cut(s)	989, 1406, 1700
BsgI	GTGCAG	1 cut(s)	446
Bsh1236I	CGCG	2 cut(s)	1488, 1890
BshNI	GGYRCC	4 cut(s)	376, 400, 2204, 2269
BshTI	ACCGGT	2 cut(s)	379, 1736
BshVI	ATCGAT	1 cut(s)	960
BsiHKAI	GWGCWC	4 cut(s)	58, 693, 1558, 2020
BsiHKCI	CYCGRG	2 cut(s)	459, 1232
BsiSI	CCGG	7 cut(s)	380, 404, 445, 518, 626, 1209, 1737
BslFI	GGGAC	4 cut(s)	28, 251, 624, 958
BslI	CCNNNNNNNGG	7 cut(s)	212, 451, 1175, 1328, 1701, 1816, 2074
BsmAI	GTCTC	8 cut(s)	290, 896, 1104, 1151, 1173, 1768, 1920, 2164
BsmBI	CGTCTC	2 cut(s)	1173, 2164
BsmFI	GGGAC	4 cut(s)	28, 251, 624, 958
BsmI	GAATGC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	1768
BsoBI	CYCGRG	2 cut(s)	459, 1232
Bsp119I	TTCGAA	1 cut(s)	716
Bsp1286I	GDGCHC	5 cut(s)	58, 637, 693, 1558, 2020
Bsp1407I	TGTACA	1 cut(s)	1713
Bsp143I	GATC	8 cut(s)	28, 677, 858, 1152, 1917, 2149, 2276, 2393
Bsp19I	CCATGG	3 cut(s)	546, 1641, 1746
BspACI	CCGC	8 cut(s)	9, 862, 1008, 1486, 1488, 1888, 1890, 1961
BspCNI	CTCAG	5 cut(s)	202, 1451, 1585, 1862, 2104
BspDI	ATCGAT	1 cut(s)	960
BspFNI	CGCG	2 cut(s)	1488, 1890
BspLI	GGNNCC	7 cut(s)	159, 378, 402, 636, 1213, 2206, 2271
BspMAI	CTGCAG	3 cut(s)	1733, 1870, 2062
BspPI	GGATC	3 cut(s)	853, 2157, 2284
BspT104I	TTCGAA	1 cut(s)	716
BspT107I	GGYRCC	4 cut(s)	376, 400, 2204, 2269
BspTNI	GGTCTC	1 cut(s)	1768
BsrDI	GCAATG	1 cut(s)	1000
BsrFI	RCCGGY	2 cut(s)	379, 1736
BsrGI	TGTACA	1 cut(s)	1713
BsrI	ACTGG	6 cut(s)	1373, 1394, 1476, 1880, 2002, 2043
BssAI	RCCGGY	2 cut(s)	379, 1736
BssMI	GATC	8 cut(s)	28, 677, 858, 1152, 1917, 2149, 2276, 2393
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	4 cut(s)	546, 1641, 1746, 1965
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	4 cut(s)	293, 608, 1070, 2274
Bst4CI	ACNGT	7 cut(s)	280, 400, 424, 496, 1684, 2194, 2416
Bst6I	CTCTTC	4 cut(s)	882, 1020, 1179, 1423
BstAPI	GCANNNNNTGC	1 cut(s)	1205
BstAUI	TGTACA	1 cut(s)	1713
BstBI	TTCGAA	1 cut(s)	716
BstC8I	GCNNGC	5 cut(s)	368, 710, 848, 1051, 1863
BstDEI	CTNAG	6 cut(s)	210, 504, 1438, 1593, 1849, 2091
BstDSI	CCRYGG	5 cut(s)	546, 1486, 1641, 1746, 1888
BstENI	CCTNNNNNAGG	1 cut(s)	1326
BstF5I	GGATG	5 cut(s)	556, 926, 1051, 1758, 1825
BstFNI	CGCG	2 cut(s)	1488, 1890
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	8 cut(s)	31, 680, 861, 1155, 1920, 2152, 2279, 2396
BstMAI	GTCTC	8 cut(s)	290, 896, 1104, 1151, 1173, 1768, 1920, 2164
BstMBI	GATC	8 cut(s)	28, 677, 858, 1152, 1917, 2149, 2276, 2393
BstMWI	GCNNNNNNNGC	9 cut(s)	15, 580, 914, 923, 1205, 1417, 1586, 1981, 2354
BstNI	CCWGG	4 cut(s)	293, 608, 1070, 2274
BstNSI	RCATGY	1 cut(s)	1984
BstSCI	CCNGG	6 cut(s)	291, 517, 606, 625, 1068, 2272
BstSFI	CTRYAG	6 cut(s)	243, 614, 660, 1729, 1866, 2058
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	2 cut(s)	1488, 1890
BstV2I	GAAGAC	1 cut(s)	1620
BstX2I	RGATCY	2 cut(s)	858, 2149
BstXI	CCANNNNNNTGG	2 cut(s)	607, 1642
BstYI	RGATCY	2 cut(s)	858, 2149
Bsu15I	ATCGAT	1 cut(s)	960
BsuTUI	ATCGAT	1 cut(s)	960
BtgI	CCRYGG	5 cut(s)	546, 1486, 1641, 1746, 1888
BtgZI	GCGATG	3 cut(s)	698, 1993, 2202
BtrI	CACGTC	1 cut(s)	2158
BtsCI	GGATG	5 cut(s)	556, 926, 1051, 1758, 1825
BtsI	GCAGTG	4 cut(s)	348, 804, 1206, 2110
BtsIMutI	CAGTG	5 cut(s)	348, 429, 804, 1206, 2110
Cac8I	GCNNGC	5 cut(s)	368, 710, 848, 1051, 1863
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	2 cut(s)	379, 1736
Cfr13I	GGNCC	3 cut(s)	1005, 1409, 2077
Cfr42I	CCGCGG	2 cut(s)	1489, 1891
ClaI	ATCGAT	1 cut(s)	960
Csp6I	GTAC	7 cut(s)	33, 222, 1479, 1714, 2190, 2205, 2386
CspAI	ACCGGT	2 cut(s)	379, 1736
CviQI	GTAC	7 cut(s)	33, 222, 1479, 1714, 2190, 2205, 2386
DdeI	CTNAG	6 cut(s)	210, 504, 1438, 1593, 1849, 2091
DpnI	GATC	8 cut(s)	30, 679, 860, 1154, 1919, 2151, 2278, 2395
DpnII	GATC	8 cut(s)	28, 677, 858, 1152, 1917, 2149, 2276, 2393
DraI	TTTAAA	1 cut(s)	22
DrdI	GACNNNNNNGTC	1 cut(s)	1820
DseDI	GACNNNNNNGTC	1 cut(s)	1820
EaeI	YGGCCR	4 cut(s)	906, 1066, 1449, 1473
Eam1104I	CTCTTC	4 cut(s)	882, 1020, 1179, 1423
EarI	CTCTTC	4 cut(s)	882, 1020, 1179, 1423
Ecl136II	GAGCTC	1 cut(s)	1556
Eco130I	CCWWGG	4 cut(s)	546, 1641, 1746, 1965
Eco147I	AGGCCT	2 cut(s)	481, 767
Eco24I	GRGCYC	2 cut(s)	637, 1558
Eco31I	GGTCTC	1 cut(s)	1768
Eco32I	GATATC	1 cut(s)	559
Eco53kI	GAGCTC	1 cut(s)	1556
Eco57I	CTGAAG	4 cut(s)	596, 1194, 1479, 1661
Eco88I	CYCGRG	2 cut(s)	459, 1232
EcoICRI	GAGCTC	1 cut(s)	1556
EcoNI	CCTNNNNNAGG	1 cut(s)	1326
EcoRII	CCWGG	4 cut(s)	291, 606, 1068, 2272
EcoRV	GATATC	1 cut(s)	559
EcoT14I	CCWWGG	4 cut(s)	546, 1641, 1746, 1965
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	637, 1558
ErhI	CCWWGG	4 cut(s)	546, 1641, 1746, 1965
Esp3I	CGTCTC	2 cut(s)	1173, 2164
FaqI	GGGAC	4 cut(s)	28, 251, 624, 958
FbaI	TGATCA	1 cut(s)	1917
FblI	GTMKAC	3 cut(s)	828, 1672, 2064
FokI	GGATG	5 cut(s)	563, 913, 1058, 1765, 1832
FriOI	GRGCYC	2 cut(s)	637, 1558
FspBI	CTAG	6 cut(s)	269, 540, 639, 914, 2286, 2298
FspI	TGCGCA	1 cut(s)	89
GlaI	GCGC	1 cut(s)	89
GsaI	CCCAGC	3 cut(s)	993, 1410, 1704
GsuI	CTGGAG	4 cut(s)	694, 968, 1781, 2346
HapII	CCGG	7 cut(s)	380, 404, 445, 518, 626, 1209, 1737
HhaI	GCGC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	2 cut(s)	289, 1873
HindII	GTYRAC	2 cut(s)	289, 1873
HindIII	AAGCTT	1 cut(s)	1241
HinfI	GANTC	7 cut(s)	239, 971, 1235, 1343, 1569, 1665, 1722
HpaI	GTTAAC	1 cut(s)	1873
HpaII	CCGG	7 cut(s)	380, 404, 445, 518, 626, 1209, 1737
HphI	GGTGA	5 cut(s)	38, 925, 1104, 1751, 2110
Hpy166II	GTNNAC	7 cut(s)	56, 289, 594, 829, 1673, 1873, 2065
Hpy188III	TCNNGA	4 cut(s)	1156, 1787, 1798, 1987
Hpy8I	GTNNAC	7 cut(s)	56, 289, 594, 829, 1673, 1873, 2065
Hpy99I	CGWCG	2 cut(s)	743, 926
HpyCH4III	ACNGT	7 cut(s)	280, 400, 424, 496, 1684, 2194, 2416
HpyCH4IV	ACGT	3 cut(s)	1782, 1956, 2157
HpyF10VI	GCNNNNNNNGC	9 cut(s)	15, 580, 914, 923, 1205, 1417, 1586, 1981, 2354
HpyF3I	CTNAG	6 cut(s)	210, 504, 1438, 1593, 1849, 2091
HpySE526I	ACGT	3 cut(s)	1782, 1956, 2157
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	2208
Ksp22I	TGATCA	1 cut(s)	1917
KspAI	GTTAAC	1 cut(s)	1873
KspI	CCGCGG	2 cut(s)	1489, 1891
Kzo9I	GATC	8 cut(s)	28, 677, 858, 1152, 1917, 2149, 2276, 2393
LmnI	GCTCC	6 cut(s)	640, 688, 1129, 1517, 1561, 1972
LweI	GCATC	8 cut(s)	64, 262, 570, 935, 1036, 1732, 2124, 2225
MaeI	CTAG	6 cut(s)	269, 540, 639, 914, 2286, 2298
MaeII	ACGT	3 cut(s)	1782, 1956, 2157
MaeIII	GTNAC	7 cut(s)	1294, 1838, 1933, 2045, 2164, 2407, 2416
MalI	GATC	8 cut(s)	30, 679, 860, 1154, 1919, 2151, 2278, 2395
MboI	GATC	8 cut(s)	28, 677, 858, 1152, 1917, 2149, 2276, 2393
MflI	RGATCY	2 cut(s)	858, 2149
MhlI	GDGCHC	5 cut(s)	58, 637, 693, 1558, 2020
MlsI	TGGCCA	3 cut(s)	1068, 1451, 1475
MluCI	AATT	6 cut(s)	142, 300, 407, 585, 1086, 1624
MluNI	TGGCCA	3 cut(s)	1068, 1451, 1475
MlyI	GAGTC	4 cut(s)	233, 980, 1244, 1352
Mox20I	TGGCCA	3 cut(s)	1068, 1451, 1475
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	1604, 1805
MscI	TGGCCA	3 cut(s)	1068, 1451, 1475
MseI	TTAA	7 cut(s)	21, 303, 435, 588, 1872, 1977, 2370
MslI	CAYNNNNRTG	4 cut(s)	1640, 1751, 2120, 2123
Msp20I	TGGCCA	3 cut(s)	1068, 1451, 1475
MspA1I	CMGCKG	4 cut(s)	1172, 1488, 1890, 2357
MspI	CCGG	7 cut(s)	380, 404, 445, 518, 626, 1209, 1737
MspR9I	CCNGG	6 cut(s)	293, 519, 608, 627, 1070, 2274
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	4 cut(s)	293, 608, 1070, 2274
MvnI	CGCG	2 cut(s)	1488, 1890
MwoI	GCNNNNNNNGC	9 cut(s)	15, 580, 914, 923, 1205, 1417, 1586, 1981, 2354
NciI	CCSGG	2 cut(s)	519, 627
NcoI	CCATGG	3 cut(s)	546, 1641, 1746
NdeII	GATC	8 cut(s)	28, 677, 858, 1152, 1917, 2149, 2276, 2393
NlaIV	GGNNCC	7 cut(s)	159, 378, 402, 636, 1213, 2206, 2271
NmeAIII	GCCGAG	1 cut(s)	924
NmuCI	GTSAC	1 cut(s)	1933
NsbI	TGCGCA	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1984
NspV	TTCGAA	1 cut(s)	716
PaeR7I	CTCGAG	2 cut(s)	459, 1232
PasI	CCCWGGG	1 cut(s)	607
PceI	AGGCCT	2 cut(s)	481, 767
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	2 cut(s)	1604, 1805
PfeI	GAWTC	3 cut(s)	1569, 1665, 1722
PinAI	ACCGGT	2 cut(s)	379, 1736
PleI	GAGTC	4 cut(s)	233, 979, 1243, 1351
PpsI	GAGTC	4 cut(s)	233, 979, 1243, 1351
PshBI	ATTAAT	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	1193
Psp124BI	GAGCTC	1 cut(s)	1558
Psp1406I	AACGTT	1 cut(s)	1782
Psp6I	CCWGG	4 cut(s)	291, 606, 1068, 2272
PspFI	CCCAGC	3 cut(s)	989, 1406, 1700
PspGI	CCWGG	4 cut(s)	291, 606, 1068, 2272
PspN4I	GGNNCC	7 cut(s)	159, 378, 402, 636, 1213, 2206, 2271
PspPI	GGNCC	3 cut(s)	1005, 1409, 2077
PspXI	VCTCGAGB	2 cut(s)	459, 1232
PstI	CTGCAG	3 cut(s)	1733, 1870, 2062
PsuI	RGATCY	2 cut(s)	858, 2149
PvuII	CAGCTG	2 cut(s)	1172, 2357
RsaI	GTAC	7 cut(s)	34, 223, 1480, 1715, 2191, 2206, 2387
RsaNI	GTAC	7 cut(s)	33, 222, 1479, 1714, 2190, 2205, 2386
RseI	CAYNNNNRTG	4 cut(s)	1640, 1751, 2120, 2123
SacI	GAGCTC	1 cut(s)	1558
SacII	CCGCGG	2 cut(s)	1489, 1891
SaqAI	TTAA	7 cut(s)	21, 303, 435, 588, 1872, 1977, 2370
Sau3AI	GATC	8 cut(s)	28, 677, 858, 1152, 1917, 2149, 2276, 2393
Sau96I	GGNCC	3 cut(s)	1005, 1409, 2077
SchI	GAGTC	4 cut(s)	233, 980, 1244, 1352
ScrFI	CCNGG	6 cut(s)	293, 519, 608, 627, 1070, 2274
SduI	GDGCHC	5 cut(s)	58, 637, 693, 1558, 2020
SfaNI	GCATC	8 cut(s)	64, 262, 570, 935, 1036, 1732, 2124, 2225
SfcI	CTRYAG	6 cut(s)	243, 614, 660, 1729, 1866, 2058
Sfr274I	CTCGAG	2 cut(s)	459, 1232
Sfr303I	CCGCGG	2 cut(s)	1489, 1891
SfuI	TTCGAA	1 cut(s)	716
SgrAI	CRCCGGYG	1 cut(s)	1736
SgrBI	CCGCGG	2 cut(s)	1489, 1891
SlaI	CTCGAG	2 cut(s)	459, 1232
SmiMI	CAYNNNNRTG	4 cut(s)	1640, 1751, 2120, 2123
SmlI	CTYRAG	4 cut(s)	459, 1037, 1232, 1985
SmoI	CTYRAG	4 cut(s)	459, 1037, 1232, 1985
Sse9I	AATT	6 cut(s)	142, 300, 407, 585, 1086, 1624
SseBI	AGGCCT	2 cut(s)	481, 767
SsiI	CCGC	8 cut(s)	9, 862, 1008, 1486, 1488, 1888, 1890, 1961
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	6 cut(s)	269, 540, 639, 914, 2286, 2298
SstI	GAGCTC	1 cut(s)	1558
StuI	AGGCCT	2 cut(s)	481, 767
StyD4I	CCNGG	6 cut(s)	291, 517, 606, 625, 1068, 2272
StyI	CCWWGG	4 cut(s)	546, 1641, 1746, 1965
TaaI	ACNGT	7 cut(s)	280, 400, 424, 496, 1684, 2194, 2416
TaiI	ACGT	3 cut(s)	1785, 1959, 2160
TaqI	TCGA	5 cut(s)	460, 716, 960, 1155, 1233
TasI	AATT	6 cut(s)	142, 300, 407, 585, 1086, 1624
TatI	WGTACW	3 cut(s)	221, 1713, 2385
TauI	GCSGC	5 cut(s)	12, 1010, 1890, 1893, 1964
TfiI	GAWTC	3 cut(s)	1569, 1665, 1722
Tru1I	TTAA	7 cut(s)	21, 303, 435, 588, 1872, 1977, 2370
Tru9I	TTAA	7 cut(s)	21, 303, 435, 588, 1872, 1977, 2370
TscAI	CASTG	5 cut(s)	355, 429, 804, 1206, 2117
TseFI	GTSAC	1 cut(s)	1933
Tsp45I	GTSAC	1 cut(s)	1933
TspDTI	ATGAA	7 cut(s)	737, 759, 1212, 1597, 1644, 1769, 2396
TspGWI	ACGGA	1 cut(s)	811
TspRI	CASTG	5 cut(s)	355, 429, 804, 1206, 2117
VneI	GTGCAC	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	303
XagI	CCTNNNNNAGG	1 cut(s)	1326
XapI	RAATTY	2 cut(s)	142, 407
XceI	RCATGY	1 cut(s)	1984
XhoI	CTCGAG	2 cut(s)	459, 1232
XmiI	GTMKAC	3 cut(s)	828, 1672, 2064
XmnI	GAANNNNTTC	2 cut(s)	1604, 1805
XspI	CTAG	6 cut(s)	269, 540, 639, 914, 2286, 2298
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.