Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000514

Physical Location & Seq

Genomic Coordinates Reverse (-)

43429119 .. 43431461

Gene Structure 2343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1728 bp

ATGGAGCACGCTACCGGCAAGAGAGGCAACAAGCCCGTGAAAACGAGAGTCAAGTTCGTCGACGATGAGGAAACCAAAGTCGTCAAGGCCTCCGACGCCTTGCCTCTGCCGCTCTACCTCACCAACGCCGTCTTCTTCACTCTCTTCTTCTCCGTCGCCTACTTCCTGCTCACCAGCTGGCGTGAGAAGATCCGTTCCAACACGCCTCTCCACATCCTCAGTCTCTCTGAGCTCGTCTCCATTCTGGTCTTGGTTGCGTCCTTCGTCTACCTCCTCGCCTTCTTCGGCATCGATTTCGTTCAGACCCCAGCTCTCAAGGACGACGACGACGAAGAAGACATTATTGTCCAGGAGGATGCTCGCGTGGTCCCTTGCGGCCAAGCCCTCGAGTGCCCGGTTCCCCAGATTGCCCCTAAAGTTGCACAGAAGGTGTTTGATGAAAGGCCGGTGACCGAGACAGCCCCACCGACTGCAGAAGATGAGGAGATTATCAAGGCTGTGGTTGCCGGAACCATTCCTTCATATTCACTCGAGTCGAAGCTCGGCGATTGCAAGAGGGCTGCTTTTATTAGGCGGGAGGCTTTGCAGAGAGTTACAGGTAAGTCTCTTGAGGGTTTGCCATTGGAGGGTTTCGATTACGAGTCCATTTTGGGTCAATGCTGTGAAATGCCAATTGGGTATGTCACCATTCCTGTTGGGATTGCTGGGCCTCTCATGCTTGATGGAAGAGAATTCTCAGTCCCCATGGCCACCACTGAAGGTTGCTTGGTGGCTAGTACCAACCGTGGTTGCAAAGCTATCAACTTGTCCGGTGGGGCTTCAAGTGTGCTTTTGAAGGATGGAATGACCAGAGCACCTGTTGTTAGATTCAACTCTGCTAAAAGGGCTGCTGAGTTGAAGTTCTTCATGGAAGATCCCGACAATTACGAAACCATCTCTATGGTTTTCAACAAATCAAGCAGATTTGGTAGACTTCAGACCGTCAAGTGTGCTGTTGCTGGGAAGAACCTGTACATGAGATTCTGCTGCAGCACTGGTGATGCTATGGGGATGAACATGGTCTCTAAAGGTGTTCAAAACGTTCTCGATTTCCTCCAGAATGACTTCCCTGACATGGATGTCATTGGCATTTCTGGCAACTACTGCTCAGACAAAAAGCCTGCTGCTGTTAACTGGATTGAAGGCCGTGGCAAATCTGTGGTTTGCGAGGCTGTTATCAAGGGAGACATAGTGTCGAAGGTGTTGAAAACCAATGTGGCGGCCTTGGTGGAGCTTAACATGCTCAAGAACCTAACTGGTTCTGCAATTGCTGGTGCCCTTGGTGGTTTCAATGCACATGCCAGTAACATTGTTTCAGCAGTCTACCTAGCCACTGGTCAAGATCCAGCTCAGAACATCGAGAGTTCTCACTGTATCACCATGATGGAAGCCATCAATGATGCCAAGGATCTTCACGTCTCAGTGACCATGCCTTCTATTGAGGTCGGCACAGTAGGAGGAGGTACCCAACTGGCATCGCAGTCGGCTTGCTTGAATTTGCTCGGAGTGAAGGGTGCCAACAGAGAGGCACCAGGATCAAACGCAAGGCAGTTAGCAAGTGTTGTAGCAGGTGCTGTTCTTGCTGGAGAGCTGTCTCTCATGTCTGCCATTGCTGCTGGACAACTTGTTAAGAGCCACATGAAGTACAACAGATCCAGCAAAGATGTCACAGCTGTTGCTGCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016104 GO:0016114 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042282 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

575

Amino Acids

61.42

Weight (kDa)

5.73

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	190 - 564	1.4e-145	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17370
fragaria_vesca	FvH4_2g17051 FvH4_2g17060 FvH4_2g17080 FvH4_2g17090 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100 FvH4_2g17100
malus_domestica	MD05G1143500.v1.1 MD10G1143400.v1.1
prunus_persica	Prupe.8G182300_v2.0.a1
pyrus_communis	pycom05g13820 pycom10g12350
rosa_chinensis	RchiOBHm_Chr6g0281271 RchiOBHm_Chr6g0281291 RchiOBHm_Chr6g0281321 RchiOBHm_Chr6g0281411 RchiOBHm_Chr6g0281421 RchiOBHm_Chr6g0281471 RchiOBHm_Chr6g0281491 RchiOBHm_Chr6g0281521
rosa_laevigata	RLG00000012968 RLG00000012970 RLG00000012971 RLG00000012973 RLG00000012974 RLG00000012978 RLG00000012980
rosa_multiflora	Rmu_co8270795.1_g000001 Rmu_co8461535.1_g000001 Rmu_sc0000847.1_g000006 Rmu_sc0000847.1_g000012 Rmu_sc0000847.1_g000019 Rmu_sc0000847.1_g000036 Rmu_sc0000847.1_g000045 Rmu_sc0000847.1_g000047 Rmu_sc0001710.1_g000007 Rmu_sc0001710.1_g000011
rosa_roxburghii	Rroxscaffold_7G00187040 Rroxscaffold_7G00187050 Rroxscaffold_7G00187090 Rroxscaffold_7G00187130 Rroxscaffold_7G00187160 Rroxscaffold_7G00187180
rosa_rugosa	Rorug06G0140200 Rorug06G0140400 Rorug06G0140700 Rorug06G0140800 Rorug06G0140900 Rorug06G0141000 Rorug06G0141100
rosa_samantha	Rh6AG252000 Rh6AG252200 Rh6AG252300 Rh6AG252600 Rh6AG252900 Rh6AG253000 Rh6AG253400 Rh6AG253500 Rh6BG255400 Rh6BG255700 Rh6BG255800 Rh6BG256000 Rh6BG256400 Rh6BG256600 Rh6CG254800 Rh6CG254900 Rh6CG255200 Rh6CG255400 Rh6CG255500 Rh6DG246600 Rh6DG246800 Rh6DG247000 Rh6DG247200 Rh6DG247500 Rh6DG247600 Rh6DG247700
rosa_wichuraiana	Rw6G021890 Rw6G021910 Rw6G021940 Rw6G021980 Rw6G022000 Rw6G022010 Rw6G022020 Rw6G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1598
AasI	GACNNNNNNGTC	2 cut(s)	344, 1118
Acc36I	ACCTGC	1 cut(s)	1598
Acc65I	GGTACC	1 cut(s)	1502
AccB1I	GGYRCC	4 cut(s)	1313, 1502, 1553, 1567
AccBSI	CCGCTC	1 cut(s)	112
AccI	GTMKAC	4 cut(s)	60, 267, 970, 1362
AccII	CGCG	1 cut(s)	363
AciI	CCGC	5 cut(s)	110, 375, 574, 1259, 1722
AclI	AACGTT	1 cut(s)	1080
AclWI	GGATC	6 cut(s)	184, 908, 1376, 1455, 1582, 1686
AcoI	YGGCCR	2 cut(s)	376, 747
AcsI	RAATTY	2 cut(s)	731, 1534
AcuI	CTGAAG	2 cut(s)	777, 959
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	4 cut(s)	778, 1013, 1504, 1685
AfiI	CCNNNNNNNGG	2 cut(s)	626, 1114
AhdI	GACNNNNNGTC	1 cut(s)	1231
AjiI	CACGTC	1 cut(s)	1456
AjnI	CCWGG	2 cut(s)	348, 1570
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 657, 689
AluBI	AGCT	9 cut(s)	177, 232, 311, 541, 797, 1273, 1388, 1630, 1712
AluI	AGCT	9 cut(s)	177, 232, 311, 541, 797, 1273, 1388, 1630, 1712
Alw21I	GWGCWC	3 cut(s)	9, 234, 856
Alw26I	GTCTC	8 cut(s)	227, 241, 449, 609, 1066, 1218, 1462, 1638
AlwI	GGATC	6 cut(s)	184, 908, 1376, 1455, 1582, 1686
AlwNI	CAGNNNCTG	1 cut(s)	1613
Ama87I	CYCGRG	2 cut(s)	386, 530
AoxI	GGCC	7 cut(s)	87, 376, 443, 707, 747, 1183, 1260
ApeKI	GCWGC	7 cut(s)	560, 887, 1026, 1029, 1163, 1652, 1718
ApoI	RAATTY	2 cut(s)	731, 1534
Asp700I	GAANNNNTTC	2 cut(s)	902, 1103
Asp718I	GGTACC	1 cut(s)	1502
AspS9I	GGNCC	2 cut(s)	367, 707
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	6 cut(s)	112, 163, 460, 676, 1049, 1408
AvaI	CYCGRG	2 cut(s)	386, 530
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	2 cut(s)	395, 1318
BalI	TGGCCA	1 cut(s)	749
BanI	GGYRCC	4 cut(s)	1313, 1502, 1553, 1567
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	995, 1027
BbsI	GAAGAC	2 cut(s)	124, 342
Bbv12I	GWGCWC	3 cut(s)	9, 234, 856
BbvI	GCAGC	7 cut(s)	547, 874, 1013, 1041, 1150, 1639, 1705
BccI	CCATC	5 cut(s)	716, 833, 941, 1417, 1439
BceAI	ACGGC	2 cut(s)	113, 1170
BcgI	CGANNNNNNTGC	4 cut(s)	277, 311, 1503, 1537
BciT130I	CCWGG	2 cut(s)	350, 1572
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	8 cut(s)	227, 241, 449, 609, 1066, 1218, 1462, 1638
BfaI	CTAG	2 cut(s)	774, 1367
BfmI	CTRYAG	2 cut(s)	471, 1027
BfuAI	ACCTGC	1 cut(s)	1598
Bme1390I	CCNGG	3 cut(s)	350, 395, 1572
Bme18I	GGWCC	1 cut(s)	367
BmeRI	GACNNNNNGTC	1 cut(s)	1231
BmeT110I	CYCGRG	2 cut(s)	386, 530
BmgBI	CACGTC	1 cut(s)	1456
BmgT120I	GGNCC	2 cut(s)	367, 707
BmiI	GGNNCC	7 cut(s)	369, 399, 511, 1315, 1504, 1555, 1569
BmrFI	CCNGG	3 cut(s)	350, 395, 1572
BmsI	GCATC	5 cut(s)	297, 346, 1030, 1429, 1523
BpiI	GAAGAC	2 cut(s)	124, 342
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	2 cut(s)	1079, 1644
BpuEI	CTTGAG	3 cut(s)	299, 629, 1268
BpuMI	CCSGG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	1066
BsaJI	CCNNGG	6 cut(s)	744, 784, 1186, 1263, 1318, 1443
BsaWI	WCCGGW	1 cut(s)	809
BsaXI	ACNNNNNCTCC	2 cut(s)	1215, 1245
Bsc4I	CCNNNNNNNGG	2 cut(s)	626, 1114
Bse118I	RCCGGY	2 cut(s)	14, 445
Bse1I	ACTGG	6 cut(s)	1039, 1178, 1300, 1341, 1378, 1515
Bse3DI	GCAATG	1 cut(s)	1647
BseBI	CCWGG	2 cut(s)	350, 1572
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	6 cut(s)	744, 784, 1186, 1263, 1318, 1443
BseGI	GGATG	5 cut(s)	213, 361, 844, 1056, 1123
BseLI	CCNNNNNNNGG	2 cut(s)	626, 1114
BseMI	GCAATG	1 cut(s)	1647
BseMII	CTCAG	7 cut(s)	219, 232, 750, 882, 1161, 1403, 1473
BseNI	ACTGG	6 cut(s)	1039, 1178, 1300, 1341, 1378, 1515
BseRI	GAGGAG	3 cut(s)	263, 497, 1512
BseSI	GKGCMC	2 cut(s)	395, 1318
BseXI	GCAGC	7 cut(s)	547, 874, 1013, 1041, 1150, 1639, 1705
BseYI	CCCAGC	3 cut(s)	307, 704, 998
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	7 cut(s)	89, 378, 445, 709, 749, 1185, 1262
BshNI	GGYRCC	4 cut(s)	1313, 1502, 1553, 1567
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	3 cut(s)	9, 234, 856
BsiHKCI	CYCGRG	2 cut(s)	386, 530
BsiSI	CCGG	5 cut(s)	15, 395, 446, 507, 810
BslFI	GGGAC	2 cut(s)	353, 725
BslI	CCNNNNNNNGG	2 cut(s)	626, 1114
BsmAI	GTCTC	8 cut(s)	227, 241, 449, 609, 1066, 1218, 1462, 1638
BsmBI	CGTCTC	2 cut(s)	241, 1462
BsmFI	GGGAC	2 cut(s)	353, 725
BsnI	GGCC	7 cut(s)	89, 378, 445, 709, 749, 1185, 1262
Bso31I	GGTCTC	1 cut(s)	1066
BsoBI	CYCGRG	2 cut(s)	386, 530
Bsp1286I	GDGCHC	5 cut(s)	9, 234, 395, 856, 1318
Bsp1407I	TGTACA	1 cut(s)	1011
Bsp143I	GATC	6 cut(s)	189, 913, 1381, 1447, 1574, 1691
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	5 cut(s)	110, 375, 574, 1259, 1722
BspANI	GGCC	7 cut(s)	89, 378, 445, 709, 749, 1185, 1262
BspCNI	CTCAG	7 cut(s)	220, 231, 749, 883, 1160, 1402, 1472
BspDI	ATCGAT	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	7 cut(s)	369, 399, 511, 1315, 1504, 1555, 1569
BspMAI	CTGCAG	2 cut(s)	475, 1031
BspMI	ACCTGC	1 cut(s)	1598
BspPI	GGATC	6 cut(s)	184, 908, 1376, 1455, 1582, 1686
BspT107I	GGYRCC	4 cut(s)	1313, 1502, 1553, 1567
BspTNI	GGTCTC	1 cut(s)	1066
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	1647
BsrFI	RCCGGY	2 cut(s)	14, 445
BsrGI	TGTACA	1 cut(s)	1011
BsrI	ACTGG	6 cut(s)	1039, 1178, 1300, 1341, 1378, 1515
BssAI	RCCGGY	2 cut(s)	14, 445
BssECI	CCNNGG	6 cut(s)	744, 784, 1186, 1263, 1318, 1443
BssMI	GATC	6 cut(s)	189, 913, 1381, 1447, 1574, 1691
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	4 cut(s)	744, 1263, 1318, 1443
Bst2UI	CCWGG	2 cut(s)	350, 1572
Bst4CI	ACNGT	4 cut(s)	785, 982, 1412, 1492
Bst6I	CTCTTC	2 cut(s)	149, 721
BstACI	GRCGYC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	1143
BstAUI	TGTACA	1 cut(s)	1011
BstC8I	GCNNGC	5 cut(s)	9, 179, 361, 1161, 1528
BstDEI	CTNAG	7 cut(s)	218, 228, 736, 891, 1147, 1389, 1459
BstDSI	CCRYGG	3 cut(s)	744, 784, 1186
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	5 cut(s)	213, 361, 844, 1056, 1123
BstFNI	CGCG	1 cut(s)	363
BstKTI	GATC	6 cut(s)	192, 916, 1384, 1450, 1577, 1694
BstMAI	GTCTC	8 cut(s)	227, 241, 449, 609, 1066, 1218, 1462, 1638
BstMBI	GATC	6 cut(s)	189, 913, 1381, 1447, 1574, 1691
BstNI	CCWGG	2 cut(s)	350, 1572
BstNSI	RCATGY	2 cut(s)	1282, 1340
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	3 cut(s)	348, 393, 1570
BstSFI	CTRYAG	2 cut(s)	471, 1027
BstSLI	GKGCMC	2 cut(s)	395, 1318
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	7 cut(s)	547, 874, 1013, 1041, 1150, 1639, 1705
BstV2I	GAAGAC	2 cut(s)	124, 342
BstX2I	RGATCY	5 cut(s)	189, 913, 1381, 1447, 1691
BstXI	CCANNNNNNTGG	1 cut(s)	940
BstYI	RGATCY	5 cut(s)	189, 913, 1381, 1447, 1691
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	7 cut(s)	89, 378, 445, 709, 749, 1185, 1262
BsuTUI	ATCGAT	1 cut(s)	291
BtgI	CCRYGG	3 cut(s)	744, 784, 1186
BtgZI	GCGATG	1 cut(s)	1500
BtrI	CACGTC	1 cut(s)	1456
BtsCI	GGATG	5 cut(s)	213, 361, 844, 1056, 1123
BtsIMutI	CAGTG	5 cut(s)	753, 1032, 1371, 1408, 1467
BveI	ACCTGC	1 cut(s)	1598
Cac8I	GCNNGC	5 cut(s)	9, 179, 361, 1161, 1528
CaiI	CAGNNNCTG	1 cut(s)	1613
Cfr10I	RCCGGY	2 cut(s)	14, 445
Cfr13I	GGNCC	2 cut(s)	367, 707
ClaI	ATCGAT	1 cut(s)	291
CseI	GACGC	2 cut(s)	104, 246
Csp6I	GTAC	4 cut(s)	777, 1012, 1503, 1684
CviQI	GTAC	4 cut(s)	777, 1012, 1503, 1684
DdeI	CTNAG	7 cut(s)	218, 228, 736, 891, 1147, 1389, 1459
DpnI	GATC	6 cut(s)	191, 915, 1383, 1449, 1576, 1693
DpnII	GATC	6 cut(s)	189, 913, 1381, 1447, 1574, 1691
DrdI	GACNNNNNNGTC	2 cut(s)	344, 1118
DriI	GACNNNNNGTC	1 cut(s)	1231
DseDI	GACNNNNNNGTC	2 cut(s)	344, 1118
EaeI	YGGCCR	2 cut(s)	376, 747
Eam1104I	CTCTTC	2 cut(s)	149, 721
Eam1105I	GACNNNNNGTC	1 cut(s)	1231
EarI	CTCTTC	2 cut(s)	149, 721
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	4 cut(s)	744, 1263, 1318, 1443
Eco147I	AGGCCT	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	1066
Eco47I	GGWCC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	777, 959
Eco88I	CYCGRG	2 cut(s)	386, 530
Eco91I	GGTNACC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	348, 1570
EcoT14I	CCWWGG	4 cut(s)	744, 1263, 1318, 1443
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	4 cut(s)	744, 1263, 1318, 1443
Esp3I	CGTCTC	2 cut(s)	241, 1462
FaqI	GGGAC	2 cut(s)	353, 725
FauI	CCCGC	1 cut(s)	567
FblI	GTMKAC	4 cut(s)	60, 267, 970, 1362
FokI	GGATG	5 cut(s)	200, 368, 851, 1063, 1130
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	774, 1367
GsaI	CCCAGC	3 cut(s)	311, 708, 1002
GsuI	CTGGAG	2 cut(s)	1079, 1644
HaeIII	GGCC	7 cut(s)	89, 378, 445, 709, 749, 1185, 1262
HapII	CCGG	5 cut(s)	15, 395, 446, 507, 810
HgaI	GACGC	2 cut(s)	104, 246
Hin1I	GRCGYC	1 cut(s)	96
HincII	GTYRAC	2 cut(s)	61, 1171
HindII	GTYRAC	2 cut(s)	61, 1171
HinfI	GANTC	5 cut(s)	48, 533, 641, 867, 1020
HpaI	GTTAAC	1 cut(s)	1171
HpaII	CCGG	5 cut(s)	15, 395, 446, 507, 810
HphI	GGTGA	6 cut(s)	112, 163, 460, 676, 1049, 1408
Hpy166II	GTNNAC	5 cut(s)	61, 268, 971, 1171, 1363
Hpy188I	TCNGA	7 cut(s)	94, 229, 303, 978, 1150, 1392, 1544
Hpy188III	TCNNGA	7 cut(s)	608, 917, 1085, 1096, 1285, 1379, 1399
Hpy8I	GTNNAC	5 cut(s)	61, 268, 971, 1171, 1363
Hpy99I	CGWCG	7 cut(s)	62, 65, 98, 158, 326, 329, 332
HpyCH4III	ACNGT	4 cut(s)	785, 982, 1412, 1492
HpyCH4IV	ACGT	2 cut(s)	1080, 1455
HpyCH4V	TGCA	8 cut(s)	422, 473, 552, 586, 792, 1029, 1304, 1334
HpyF3I	CTNAG	7 cut(s)	218, 228, 736, 891, 1147, 1389, 1459
HpySE526I	ACGT	2 cut(s)	1080, 1455
Hsp92I	GRCGYC	1 cut(s)	96
KpnI	GGTACC	1 cut(s)	1506
KspAI	GTTAAC	1 cut(s)	1171
Kzo9I	GATC	6 cut(s)	189, 913, 1381, 1447, 1574, 1691
LmnI	GCTCC	2 cut(s)	4, 1270
Lsp1109I	GCAGC	7 cut(s)	547, 874, 1013, 1041, 1150, 1639, 1705
LweI	GCATC	5 cut(s)	297, 346, 1030, 1429, 1523
MaeI	CTAG	2 cut(s)	774, 1367
MaeII	ACGT	2 cut(s)	1080, 1455
MaeIII	GTNAC	6 cut(s)	448, 592, 682, 1343, 1462, 1705
MalI	GATC	6 cut(s)	191, 915, 1383, 1449, 1576, 1693
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	6 cut(s)	189, 913, 1381, 1447, 1574, 1691
MfeI	CAATTG	2 cut(s)	672, 1305
MflI	RGATCY	5 cut(s)	189, 913, 1381, 1447, 1691
MhlI	GDGCHC	5 cut(s)	9, 234, 395, 856, 1318
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	5 cut(s)	672, 731, 922, 1305, 1534
MluNI	TGGCCA	1 cut(s)	749
MlyI	GAGTC	3 cut(s)	57, 542, 650
MmeI	TCCRAC	2 cut(s)	117, 222
Mox20I	TGGCCA	1 cut(s)	749
MroXI	GAANNNNTTC	2 cut(s)	902, 1103
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	3 cut(s)	1170, 1275, 1668
MslI	CAYNNNNRTG	2 cut(s)	938, 1421
Msp20I	TGGCCA	1 cut(s)	749
MspA1I	CMGCKG	2 cut(s)	177, 1712
MspI	CCGG	5 cut(s)	15, 395, 446, 507, 810
MspR9I	CCNGG	3 cut(s)	350, 395, 1572
MunI	CAATTG	2 cut(s)	672, 1305
MvaI	CCWGG	2 cut(s)	350, 1572
MvnI	CGCG	1 cut(s)	363
NciI	CCSGG	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	744
NdeII	GATC	6 cut(s)	189, 913, 1381, 1447, 1574, 1691
NlaIV	GGNNCC	7 cut(s)	369, 399, 511, 1315, 1504, 1555, 1569
NmeAIII	GCCGAG	1 cut(s)	522
NmuCI	GTSAC	4 cut(s)	448, 682, 1462, 1705
NspI	RCATGY	2 cut(s)	1282, 1340
PaeR7I	CTCGAG	2 cut(s)	386, 530
PaqCI	CACCTGC	1 cut(s)	1598
PceI	AGGCCT	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PdmI	GAANNNNTTC	2 cut(s)	902, 1103
PfeI	GAWTC	2 cut(s)	867, 1020
PfoI	TCCNGGA	1 cut(s)	348
PleI	GAGTC	3 cut(s)	56, 541, 649
PpsI	GAGTC	3 cut(s)	56, 541, 649
Psp124BI	GAGCTC	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	1080
Psp6I	CCWGG	2 cut(s)	348, 1570
PspEI	GGTNACC	1 cut(s)	448
PspFI	CCCAGC	3 cut(s)	307, 704, 998
PspGI	CCWGG	2 cut(s)	348, 1570
PspN4I	GGNNCC	7 cut(s)	369, 399, 511, 1315, 1504, 1555, 1569
PspPI	GGNCC	2 cut(s)	367, 707
PspXI	VCTCGAGB	2 cut(s)	386, 530
PstI	CTGCAG	2 cut(s)	475, 1031
PstNI	CAGNNNCTG	1 cut(s)	1613
PsuI	RGATCY	5 cut(s)	189, 913, 1381, 1447, 1691
PvuII	CAGCTG	2 cut(s)	177, 1712
RsaI	GTAC	4 cut(s)	778, 1013, 1504, 1685
RsaNI	GTAC	4 cut(s)	777, 1012, 1503, 1684
RseI	CAYNNNNRTG	2 cut(s)	938, 1421
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	1170, 1275, 1668
Sau3AI	GATC	6 cut(s)	189, 913, 1381, 1447, 1574, 1691
Sau96I	GGNCC	2 cut(s)	367, 707
SchI	GAGTC	3 cut(s)	57, 542, 650
ScrFI	CCNGG	3 cut(s)	350, 395, 1572
SduI	GDGCHC	5 cut(s)	9, 234, 395, 856, 1318
SfaNI	GCATC	5 cut(s)	297, 346, 1030, 1429, 1523
SfcI	CTRYAG	2 cut(s)	471, 1027
Sfr274I	CTCGAG	2 cut(s)	386, 530
SgrDI	CGTCGACG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	367
SlaI	CTCGAG	2 cut(s)	386, 530
SmiMI	CAYNNNNRTG	2 cut(s)	938, 1421
SmlI	CTYRAG	5 cut(s)	314, 386, 530, 608, 1283
SmoI	CTYRAG	5 cut(s)	314, 386, 530, 608, 1283
Sse9I	AATT	5 cut(s)	672, 731, 922, 1305, 1534
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	5 cut(s)	110, 375, 574, 1259, 1722
SspMI	CTAG	2 cut(s)	774, 1367
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	348, 393, 1570
StyI	CCWWGG	4 cut(s)	744, 1263, 1318, 1443
TaaI	ACNGT	4 cut(s)	785, 982, 1412, 1492
TaiI	ACGT	2 cut(s)	1083, 1458
TaqI	TCGA	9 cut(s)	60, 291, 387, 531, 536, 633, 1086, 1235, 1398
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	5 cut(s)	672, 731, 922, 1305, 1534
TatI	WGTACW	2 cut(s)	1011, 1683
TauI	GCSGC	4 cut(s)	112, 378, 1262, 1724
TfiI	GAWTC	2 cut(s)	867, 1020
Tru1I	TTAA	3 cut(s)	1170, 1275, 1668
Tru9I	TTAA	3 cut(s)	1170, 1275, 1668
TscAI	CASTG	5 cut(s)	760, 1039, 1378, 1415, 1467
TseFI	GTSAC	4 cut(s)	448, 682, 1462, 1705
TseI	GCWGC	7 cut(s)	560, 887, 1026, 1029, 1163, 1652, 1718
Tsp45I	GTSAC	4 cut(s)	448, 682, 1462, 1705
TspDTI	ATGAA	5 cut(s)	453, 510, 895, 1067, 1694
TspGWI	ACGGA	2 cut(s)	142, 182
TspRI	CASTG	5 cut(s)	760, 1039, 1378, 1415, 1467
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	2 cut(s)	731, 1534
XceI	RCATGY	2 cut(s)	1282, 1340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XhoI	CTCGAG	2 cut(s)	386, 530
XmiI	GTMKAC	4 cut(s)	60, 267, 970, 1362
XmnI	GAANNNNTTC	2 cut(s)	902, 1103
XspI	CTAG	2 cut(s)	774, 1367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.