Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Reverse (-)

16705926 .. 16707429

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19763.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGTAGTGTTTACTTGTACTTCTCCATGATTCTTCTGGCTTCTTCTAGACTATCATCCACCCCGTTCTCCTTTGGTGTCTTGGTGGCTTCTTCTCAACTTCCTAATGTAGATGAACGCACACTGAGCATTCCTCTGTCTCGCAATCCAGTGCAAGATACTACATTGGGCTATGAAAAAAGGGGTTGGTTCACTGTTAAAGGTGCATATTGGACTGCTAGGGGACATGTTTTGGGATCGGCATCAGCATTTCAGCAACCACATCATCAGGCAACCCTTTTAAGGAACTTTGGAGGAGGCTTTGGAAGACCAAAGTTCCAATGCCCTACTACTCTTGAAATACTCTCGGCTGCACCATTTTCATTACAGCATACACTTCTCCCCAATTTACATTTTGGGGAGCGGATGTTGGAGCGAGCACTTCATTTGAGGACGGAGGTGTTTGCAAAATTGGTTATGAGAGCTATAGAATCGGGTTTCAAGTCCCTCTCAAAATTTGCTCTCGTCTATGGCGGCCTGTTGTTATTGGTTGATGGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

181

Amino Acids

19.92

Weight (kDa)

10.07

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	403
AciI	CCGC	2 cut(s)	403, 513
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	494
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	338, 481
AluBI	AGCT	1 cut(s)	464
AluI	AGCT	1 cut(s)	464
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	527
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	2 cut(s)	48, 219
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	2 cut(s)	351, 514
BlsI	GCNGC	2 cut(s)	352, 515
BmsI	GCATC	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
BsaBI	GATNNNNATC	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	149
Bse8I	GATNNNNATC	1 cut(s)	241
BseGI	GGATG	2 cut(s)	56, 411
BseJI	GATNNNNATC	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	237, 469
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	237, 469
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	2 cut(s)	403, 513
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	56, 411
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	56, 411
BtsIMutI	CAGTG	3 cut(s)	122, 156, 192
Cac8I	GCNNGC	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	2 cut(s)	28, 227
CviJI	RGCY	7 cut(s)	41, 89, 171, 300, 350, 464, 516
CviKI_1	RGCY	7 cut(s)	41, 89, 171, 300, 350, 464, 516
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
FaeI	CATG	2 cut(s)	31, 230
FaiI	YATR	8 cut(s)	29, 174, 208, 228, 372, 458, 467, 510
FaqI	GGGAC	2 cut(s)	237, 469
FatI	CATG	2 cut(s)	27, 226
Fnu4HI	GCNGC	2 cut(s)	351, 514
FokI	GGATG	2 cut(s)	43, 418
Fsp4HI	GCNGC	2 cut(s)	351, 514
FspBI	CTAG	2 cut(s)	48, 219
GluI	GCNGC	2 cut(s)	351, 514
HaeIII	GGCC	1 cut(s)	516
Hin1II	CATG	2 cut(s)	31, 230
HinfI	GANTC	2 cut(s)	31, 470
Hpy166II	GTNNAC	2 cut(s)	13, 192
Hpy188III	TCNNGA	2 cut(s)	48, 335
Hpy8I	GTNNAC	2 cut(s)	13, 192
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	154, 206, 353, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	31, 230
Kzo9I	GATC	1 cut(s)	236
LmnI	GCTCC	2 cut(s)	400, 412
LpnPI	CCDG	4 cut(s)	23, 162, 254, 530
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	2 cut(s)	48, 219
MalI	GATC	1 cut(s)	238
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	1 cut(s)	236
MboII	GAAGA	4 cut(s)	26, 36, 84, 318
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	3 cut(s)	385, 449, 494
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	6 cut(s)	144, 287, 290, 423, 430, 497
MseI	TTAA	2 cut(s)	198, 281
Mva1269I	GAATGC	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	31, 230
NmeAIII	GCCGAG	1 cut(s)	326
NspI	RCATGY	1 cut(s)	230
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	31, 470
PkrI	GCNGC	2 cut(s)	352, 515
PscI	ACATGT	1 cut(s)	226
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	198, 281
SatI	GCNGC	2 cut(s)	351, 514
Sau3AI	GATC	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	3 cut(s)	205, 441, 466
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	465
Sse9I	AATT	3 cut(s)	385, 449, 494
SsiI	CCGC	2 cut(s)	403, 513
SspMI	CTAG	2 cut(s)	48, 219
TaaI	ACNGT	1 cut(s)	196
TasI	AATT	3 cut(s)	385, 449, 494
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	31, 470
Tru1I	TTAA	2 cut(s)	198, 281
Tru9I	TTAA	2 cut(s)	198, 281
TscAI	CASTG	3 cut(s)	129, 156, 199
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	4 cut(s)	129, 189, 351, 413
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	3 cut(s)	129, 156, 199
XapI	RAATTY	1 cut(s)	494
XbaI	TCTAGA	1 cut(s)	47
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XspI	CTAG	2 cut(s)	48, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.