Rmu_sc0010867.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010867.1
OG0002539
Physical Location & Seq
Reverse (-)
2 .. 685
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010867.1_g000001.1.cds

Sequence Viewer

Length: 592 bp
atgaggaattatggaagagaatatggaaggcaaaagtgcctgtgtattctgtgtccacatgcatatgaagatatttaccacgtcctttgcaaatgccctactgcagctgcaatcttaactgcacctccctttaatttgggacgaagcttggtaccccatgttgagtttaaggactggttactggatcatgccatgcatctaaagaaagaagtttttgcaaagctcctgatgatgctttgggctttgtggaagaacaggaacaatatgttgtggaacaatacaacgcaacctgctgatgccctagtacttagcacgattgcttggtttgatgacttcagtaggattcatggtgctgacaaaccaacgcacccaaaacaaaagcagttttggagaccggctgccccaggaacatggaaactaaatgtcggcggtagtttccttccaaacattgatcgtggtggtgcagggggtgtgttgcggaatgaagtagggcattttcatgtggcttttgtaactcctgtccagtatgtaacttcggcaaagcaagttgaactgtgtgctattagagaaggcttaaagatggtgacagcaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

197

Amino Acids

22.32

Weight (kDa)

9.3

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 298
Acc65I GGTACC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 151
AciI CCGC 2 cut(s) 429, 478
AclWI GGATC 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 319
AfaI GTAC 2 cut(s) 153, 306
AgsI TTSAA 1 cut(s) 551
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 3 cut(s) 107, 147, 223
AluI AGCT 3 cut(s) 107, 147, 223
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 104, 107, 398
Asp718I GGTACC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 151
BbvI GCAGC 3 cut(s) 94, 116, 385
BccI CCATC 1 cut(s) 574
BciT130I CCWGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 3 cut(s) 105, 108, 399
BlsI GCNGC 3 cut(s) 106, 109, 400
BmcAI AGTACT 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 405
BmgBI CACGTC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 3 cut(s) 205, 222, 286
BsaI GGTCTC 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 3 cut(s) 179, 186, 523
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 403
BseNI ACTGG 3 cut(s) 179, 186, 523
BseXI GCAGC 3 cut(s) 94, 116, 385
BsgI GTGCAG 2 cut(s) 105, 483
BshNI GGYRCC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 385
Bsp143I GATC 2 cut(s) 184, 451
BspACI CCGC 2 cut(s) 429, 478
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 394
BsrI ACTGG 3 cut(s) 179, 186, 523
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 2 cut(s) 184, 451
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 555
Bst6I CTCTTC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 308
BstKTI GATC 2 cut(s) 187, 454
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 184, 451
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 3 cut(s) 94, 116, 385
BstXI CCANNNNNNTGG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 82
BveI ACCTGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 394
Csp6I GTAC 2 cut(s) 152, 305
CspCI CAANNNNNGTGG 2 cut(s) 68, 103
CviAII CATG 7 cut(s) 59, 158, 188, 193, 347, 411, 500
CviJI RGCY 7 cut(s) 107, 147, 223, 242, 398, 506, 573
CviKI_1 RGCY 7 cut(s) 107, 147, 223, 242, 398, 506, 573
CviQI GTAC 2 cut(s) 152, 305
DdeI CTNAG 1 cut(s) 308
DpnI GATC 2 cut(s) 186, 453
DpnII GATC 2 cut(s) 184, 451
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 403
EcoT22I ATGCAT 2 cut(s) 64, 198
FaeI CATG 7 cut(s) 62, 161, 191, 196, 350, 414, 503
FaqI GGGAC 1 cut(s) 153
FatI CATG 7 cut(s) 58, 157, 187, 192, 346, 410, 499
FauNDI CATATG 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 105, 108, 399
Fsp4HI GCNGC 3 cut(s) 105, 108, 399
FspBI CTAG 1 cut(s) 302
GluI GCNGC 3 cut(s) 105, 108, 399
HapII CCGG 1 cut(s) 395
Hin1II CATG 7 cut(s) 62, 161, 191, 196, 350, 414, 503
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 21, 449, 563
HpyCH4III ACNGT 1 cut(s) 555
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 8 cut(s) 62, 90, 104, 110, 122, 196, 218, 464
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 7 cut(s) 62, 161, 191, 196, 350, 414, 503
KpnI GGTACC 1 cut(s) 155
Kzo9I GATC 2 cut(s) 184, 451
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 3 cut(s) 94, 116, 385
LweI GCATC 3 cut(s) 205, 222, 286
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 4 cut(s) 177, 511, 529, 583
MalI GATC 2 cut(s) 186, 453
MboI GATC 2 cut(s) 184, 451
MboII GAAGA 3 cut(s) 27, 80, 262
MluCI AATT 2 cut(s) 7, 133
MnlI CCTC 1 cut(s) 135
Mph1103I ATGCAT 2 cut(s) 64, 198
MseI TTAA 4 cut(s) 116, 132, 168, 575
MslI CAYNNNNRTG 2 cut(s) 63, 498
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 64
NdeII GATC 2 cut(s) 184, 451
NlaIII CATG 7 cut(s) 62, 161, 191, 196, 350, 414, 503
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 583
NsiI ATGCAT 2 cut(s) 64, 198
NspI RCATGY 1 cut(s) 62
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 3 cut(s) 106, 109, 400
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 153
PstI CTGCAG 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 2 cut(s) 153, 306
RsaNI GTAC 2 cut(s) 152, 305
RseI CAYNNNNRTG 2 cut(s) 63, 498
SaqAI TTAA 4 cut(s) 116, 132, 168, 575
SatI GCNGC 3 cut(s) 105, 108, 399
Sau3AI GATC 2 cut(s) 184, 451
ScaI AGTACT 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 405
SetI ASST 6 cut(s) 84, 109, 127, 149, 225, 292
SfaNI GCATC 3 cut(s) 205, 222, 286
SfcI CTRYAG 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 63, 498
Sse9I AATT 2 cut(s) 7, 133
SsiI CCGC 2 cut(s) 429, 478
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 555
TaiI ACGT 1 cut(s) 84
TasI AATT 2 cut(s) 7, 133
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 4 cut(s) 116, 132, 168, 575
Tru9I TTAA 4 cut(s) 116, 132, 168, 575
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 3 cut(s) 104, 107, 398
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 4 cut(s) 81, 335, 488, 498
XceI RCATGY 1 cut(s) 62
XspI CTAG 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 306
Zsp2I ATGCAT 2 cut(s) 64, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.