Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 43 - 124 | 2.2e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 370 |
| AcuI | CTGAAG | 2 cut(s) | 282, 338 |
| AfaI | GTAC | 1 cut(s) | 231 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 62, 110 |
| AgsI | TTSAA | 1 cut(s) | 108 |
| AluBI | AGCT | 1 cut(s) | 275 |
| AluI | AGCT | 1 cut(s) | 275 |
| ApoI | RAATTY | 1 cut(s) | 370 |
| AseI | ATTAAT | 1 cut(s) | 126 |
| AsuHPI | GGTGA | 1 cut(s) | 97 |
| BbsI | GAAGAC | 1 cut(s) | 272 |
| BccI | CCATC | 2 cut(s) | 25, 128 |
| BfaI | CTAG | 1 cut(s) | 219 |
| BpiI | GAAGAC | 1 cut(s) | 272 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 314, 346 |
| BsaJI | CCNNGG | 1 cut(s) | 298 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 62, 110 |
| Bse1I | ACTGG | 1 cut(s) | 115 |
| Bse3DI | GCAATG | 1 cut(s) | 219 |
| BseDI | CCNNGG | 1 cut(s) | 298 |
| BseGI | GGATG | 2 cut(s) | 52, 312 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 62, 110 |
| BseMI | GCAATG | 1 cut(s) | 219 |
| BseNI | ACTGG | 1 cut(s) | 115 |
| BseRI | GAGGAG | 3 cut(s) | 50, 214, 377 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 62, 110 |
| Bsp1407I | TGTACA | 1 cut(s) | 229 |
| Bsp19I | CCATGG | 1 cut(s) | 298 |
| BsrDI | GCAATG | 1 cut(s) | 219 |
| BsrGI | TGTACA | 1 cut(s) | 229 |
| BsrI | ACTGG | 1 cut(s) | 115 |
| BssECI | CCNNGG | 1 cut(s) | 298 |
| BssT1I | CCWWGG | 1 cut(s) | 298 |
| BstAUI | TGTACA | 1 cut(s) | 229 |
| BstDSI | CCRYGG | 1 cut(s) | 298 |
| BstF5I | GGATG | 2 cut(s) | 52, 312 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 272 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstV2I | GAAGAC | 1 cut(s) | 272 |
| BtgI | CCRYGG | 1 cut(s) | 298 |
| BtsCI | GGATG | 2 cut(s) | 52, 312 |
| BtsIMutI | CAGTG | 1 cut(s) | 20 |
| Csp6I | GTAC | 1 cut(s) | 230 |
| CviAII | CATG | 2 cut(s) | 233, 299 |
| CviJI | RGCY | 5 cut(s) | 97, 118, 218, 260, 275 |
| CviKI_1 | RGCY | 5 cut(s) | 97, 118, 218, 260, 275 |
| CviQI | GTAC | 1 cut(s) | 230 |
| Eco130I | CCWWGG | 1 cut(s) | 298 |
| Eco57I | CTGAAG | 2 cut(s) | 282, 338 |
| EcoRI | GAATTC | 1 cut(s) | 370 |
| EcoT14I | CCWWGG | 1 cut(s) | 298 |
| ErhI | CCWWGG | 1 cut(s) | 298 |
| FaeI | CATG | 2 cut(s) | 236, 302 |
| FaiI | YATR | 7 cut(s) | 45, 68, 185, 194, 234, 254, 300 |
| FatI | CATG | 2 cut(s) | 232, 298 |
| FokI | GGATG | 2 cut(s) | 39, 319 |
| FspBI | CTAG | 1 cut(s) | 219 |
| Hin1II | CATG | 2 cut(s) | 236, 302 |
| HinfI | GANTC | 2 cut(s) | 10, 329 |
| HphI | GGTGA | 1 cut(s) | 97 |
| Hpy166II | GTNNAC | 1 cut(s) | 18 |
| Hpy188I | TCNGA | 2 cut(s) | 306, 357 |
| Hpy8I | GTNNAC | 1 cut(s) | 18 |
| HpyAV | CCTTC | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 236, 350 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 272 |
| Hsp92II | CATG | 2 cut(s) | 236, 302 |
| LpnPI | CCDG | 2 cut(s) | 96, 261 |
| MaeI | CTAG | 1 cut(s) | 219 |
| MaeIII | GTNAC | 2 cut(s) | 85, 326 |
| MboII | GAAGA | 4 cut(s) | 85, 272, 275, 379 |
| MluCI | AATT | 5 cut(s) | 123, 127, 311, 342, 370 |
| MlyI | GAGTC | 1 cut(s) | 323 |
| MmeI | TCCRAC | 1 cut(s) | 284 |
| MnlI | CCTC | 6 cut(s) | 28, 76, 192, 250, 355, 372 |
| MseI | TTAA | 3 cut(s) | 126, 144, 341 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 272 |
| NcoI | CCATGG | 1 cut(s) | 298 |
| NlaIII | CATG | 2 cut(s) | 236, 302 |
| NmuCI | GTSAC | 2 cut(s) | 85, 326 |
| NspI | RCATGY | 1 cut(s) | 236 |
| PfeI | GAWTC | 1 cut(s) | 10 |
| PflFI | GACNNNGTC | 1 cut(s) | 332 |
| PleI | GAGTC | 1 cut(s) | 323 |
| PpsI | GAGTC | 1 cut(s) | 323 |
| PshBI | ATTAAT | 1 cut(s) | 126 |
| PsyI | GACNNNGTC | 1 cut(s) | 332 |
| RsaI | GTAC | 1 cut(s) | 231 |
| RsaNI | GTAC | 1 cut(s) | 230 |
| SaqAI | TTAA | 3 cut(s) | 126, 144, 341 |
| SchI | GAGTC | 1 cut(s) | 323 |
| SetI | ASST | 5 cut(s) | 87, 150, 226, 277, 383 |
| SgeI | CNNG | 9 cut(s) | 37, 70, 123, 231, 245, 279, 288, 299, 311 |
| Sse9I | AATT | 5 cut(s) | 123, 127, 311, 342, 370 |
| SspMI | CTAG | 1 cut(s) | 219 |
| StyI | CCWWGG | 1 cut(s) | 298 |
| TasI | AATT | 5 cut(s) | 123, 127, 311, 342, 370 |
| TatI | WGTACW | 1 cut(s) | 229 |
| TfiI | GAWTC | 1 cut(s) | 10 |
| Tru1I | TTAA | 3 cut(s) | 126, 144, 341 |
| Tru9I | TTAA | 3 cut(s) | 126, 144, 341 |
| TscAI | CASTG | 1 cut(s) | 20 |
| TseFI | GTSAC | 2 cut(s) | 85, 326 |
| Tsp45I | GTSAC | 2 cut(s) | 85, 326 |
| TspDTI | ATGAA | 2 cut(s) | 41, 323 |
| TspRI | CASTG | 1 cut(s) | 20 |
| Tth111I | GACNNNGTC | 1 cut(s) | 332 |
| VspI | ATTAAT | 1 cut(s) | 126 |
| XapI | RAATTY | 1 cut(s) | 370 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XspI | CTAG | 1 cut(s) | 219 |