Rmu_sc0002854.1_g000009
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002854.1
OG0002539
Physical Location & Seq
Reverse (-)
14628 .. 24341
9714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002854.1_g000009.1.cds

Sequence Viewer

Length: 1314 bp
atgcattgccttctatgttcccatgcctatgaagacagtgctcacatcttctgtaaatgccttactgctgtccaagcattgactgcagcactgtttcatttgggaaggagtttgctgcctaacatcgacttcaaggagtggatgcttgatcatgccttgaagcttaagcaagaagtctttgcaaaactcatgatggtgcgttgggccttatggaaaaacatgaataatatgctttggcagaacacaactcaatctgtagatgagttggccctcagttcattaacatggctagaagattttagtcaagcacacaaagtagagaagccgtcccaaccgaaggggaagaaaatctggcaattgacaactcaaaacaggtggaagctaaatgttgatggtagttttttgcctcaagtcactcatggtggacctggaggcattctgagggataatacaggaaacttcaaggctgctttttctgttcctaggacgctgtacgacgtcgcaccgccaccaccgatcaccgcaagaggttacttcagcacaaagagcttaatccctagtccgcggagagcttcatctacgcctgaagagttgagatcttatcaaggacgatcgattcagctcttgcaggatccgaagcaccatacaaattcaaagttacatgaagcattggctgatcaattgactgacatagttgtaaatgcggtgtttgagattgcaaaggctatggcttgggttccagttggagcagacaggaataagacatatcttcatcttaaccaatggataccagatgaacttaaatttgatctgaactgccttctgtatacacatggtaagctctgccgcaagtgcatcaagaaaggaggtagcactggtaagcagcaagaacacgaatacaaggatatcaattccaacttcatgtatgcaatctgcaatgaacctcccctacgtccttgcctcccttgcgcgcgctgctgcccggctcgcctacccagcttgcctactccttgcaagtctgcagcccactgccgcagcccctgcctcctgccggaagtccccgcaacttcctgccacacccctgctgcctgcgcacccgcctgcaacctacacaacagcccgcgctactttcctgcagaacctccagtgacgcacaccctgctgcacaacagcgtgcgtccctgcacctttctgcttgctgctgccgagcccactgcctgctgctgcctactccggccaaatctgccgttgctgccactagtctctgctgttgctcaccattcggtcactgctcttgcggctgcagtttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

437

Amino Acids

48.63

Weight (kDa)

8.88

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 501
Acc16I TGCGCA 1 cut(s) 1093
AccI GTMKAC 1 cut(s) 827
AccII CGCG 4 cut(s) 565, 971, 973, 1123
AclWI GGATC 2 cut(s) 626, 639
AcoI YGGCCR 1 cut(s) 1235
AcsI RAATTY 2 cut(s) 649, 803
AcuI CTGAAG 2 cut(s) 520, 606
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 2 cut(s) 337, 1051
AflII CTTAAG 1 cut(s) 164
AgsI TTSAA 4 cut(s) 133, 160, 463, 654
AhlI ACTAGT 1 cut(s) 1258
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 7 cut(s) 163, 382, 549, 572, 622, 841, 999
AluI AGCT 7 cut(s) 163, 382, 549, 572, 622, 841, 999
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 1267
AlwI GGATC 2 cut(s) 626, 639
AlwNI CAGNNNCTG 1 cut(s) 1041
AoxI GGCC 3 cut(s) 204, 267, 1235
ApoI RAATTY 2 cut(s) 649, 803
AspA2I CCTAGG 1 cut(s) 482
AspLEI GCGC 5 cut(s) 971, 973, 975, 1094, 1125
AspS9I GGNCC 3 cut(s) 204, 268, 425
AsuC2I CCSGG 1 cut(s) 983
AsuHPI GGTGA 2 cut(s) 511, 1268
AvaII GGWCC 1 cut(s) 425
AvrII CCTAGG 1 cut(s) 482
BamHI GGATCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 1212
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 43
BccI CCATC 2 cut(s) 187, 386
BceAI ACGGC 2 cut(s) 310, 1231
BcgI CGANNNNNNTGC 2 cut(s) 1196, 1230
BciT130I CCWGG 1 cut(s) 429
BciVI GTATCC 1 cut(s) 780
BclI TGATCA 2 cut(s) 148, 676
BcnI CCSGG 1 cut(s) 983
BcoDI GTCTC 1 cut(s) 1267
BcuI ACTAGT 1 cut(s) 1258
BfaI CTAG 4 cut(s) 290, 483, 558, 1259
BfmI CTRYAG 5 cut(s) 84, 255, 1020, 1134, 1302
BfrI CTTAAG 1 cut(s) 164
BfuI GTATCC 1 cut(s) 780
BglII AGATCT 1 cut(s) 596
BlnI CCTAGG 1 cut(s) 482
Bme1390I CCNGG 2 cut(s) 429, 983
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 3 cut(s) 204, 268, 425
BmiI GGNNCC 2 cut(s) 633, 738
BmrFI CCNGG 2 cut(s) 429, 983
BmsI GCATC 2 cut(s) 132, 864
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 2 cut(s) 450, 1128
BpuEI CTTGAG 1 cut(s) 393
BpuMI CCSGG 1 cut(s) 983
Bsa29I ATCGAT 1 cut(s) 614
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 482, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 1051
Bse1I ACTGG 3 cut(s) 740, 880, 1145
Bse3DI GCAATG 2 cut(s) 4, 943
BseBI CCWGG 1 cut(s) 429
BseCI ATCGAT 1 cut(s) 614
BseDI CCNNGG 2 cut(s) 482, 563
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 337, 1051
BseMI GCAATG 2 cut(s) 4, 943
BseMII CTCAG 2 cut(s) 286, 431
BseNI ACTGG 3 cut(s) 740, 880, 1145
BsePI GCGCGC 2 cut(s) 969, 971
BseYI CCCAGC 1 cut(s) 995
BsgI GTGCAG 2 cut(s) 1148, 1168
Bsh1236I CGCG 4 cut(s) 565, 971, 973, 1123
Bsh1285I CGRYCG 1 cut(s) 614
BshFI GGCC 3 cut(s) 206, 269, 1237
BshVI ATCGAT 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 614
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 3 cut(s) 983, 1052, 1234
BslFI GGGAC 3 cut(s) 313, 1043, 1164
BslI CCNNNNNNNGG 2 cut(s) 337, 1051
BsmAI GTCTC 1 cut(s) 1267
BsmFI GGGAC 3 cut(s) 313, 1043, 1164
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 3 cut(s) 206, 269, 1237
Bsp1286I GDGCHC 2 cut(s) 43, 1212
Bsp143I GATC 7 cut(s) 148, 516, 596, 611, 631, 676, 808
BspANI GGCC 3 cut(s) 206, 269, 1237
BspCNI CTCAG 2 cut(s) 285, 432
BspDI ATCGAT 1 cut(s) 614
BspFNI CGCG 4 cut(s) 565, 971, 973, 1123
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 633, 738
BspMAI CTGCAG 4 cut(s) 88, 1024, 1138, 1306
BspPI GGATC 2 cut(s) 626, 639
BspTI CTTAAG 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 4, 943
BsrI ACTGG 3 cut(s) 740, 880, 1145
BssECI CCNNGG 2 cut(s) 482, 563
BssHII GCGCGC 2 cut(s) 969, 971
BssMI GATC 7 cut(s) 148, 516, 596, 611, 631, 676, 808
BssNAI GTATAC 1 cut(s) 828
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 482
Bst1107I GTATAC 1 cut(s) 828
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 2 cut(s) 38, 93
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 498
BstAFI CTTAAG 1 cut(s) 164
BstAPI GCANNNNNTGC 3 cut(s) 83, 1041, 1159
BstDEI CTNAG 2 cut(s) 272, 440
BstDSI CCRYGG 1 cut(s) 563
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 4 cut(s) 565, 971, 973, 1123
BstHHI GCGC 5 cut(s) 971, 973, 975, 1094, 1125
BstKTI GATC 7 cut(s) 151, 519, 599, 614, 634, 679, 811
BstMAI GTCTC 1 cut(s) 1267
BstMBI GATC 7 cut(s) 148, 516, 596, 611, 631, 676, 808
BstMCI CGRYCG 1 cut(s) 614
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 2 cut(s) 427, 981
BstSFI CTRYAG 5 cut(s) 84, 255, 1020, 1134, 1302
BstUI CGCG 4 cut(s) 565, 971, 973, 1123
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 596, 631
BstYI RGATCY 2 cut(s) 596, 631
BstZ17I GTATAC 1 cut(s) 828
Bsu15I ATCGAT 1 cut(s) 614
BsuI GTATCC 1 cut(s) 780
BsuRI GGCC 3 cut(s) 206, 269, 1237
BsuTUI ATCGAT 1 cut(s) 614
BtgI CCRYGG 1 cut(s) 563
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 3 cut(s) 1027, 1212, 1287
BtsIMutI CAGTG 7 cut(s) 43, 89, 873, 1027, 1152, 1212, 1287
CaiI CAGNNNCTG 1 cut(s) 1041
CciI TCATGA 1 cut(s) 189
CfoI GCGC 5 cut(s) 971, 973, 975, 1094, 1125
Cfr13I GGNCC 3 cut(s) 204, 268, 425
Cfr42I CCGCGG 1 cut(s) 566
ClaI ATCGAT 1 cut(s) 614
CseI GACGC 3 cut(s) 496, 1159, 1166
Csp6I GTAC 1 cut(s) 493
CspCI CAANNNNNGTGG 2 cut(s) 356, 391
CviAII CATG 9 cut(s) 23, 152, 190, 220, 285, 419, 662, 833, 922
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 2 cut(s) 272, 440
DpnI GATC 7 cut(s) 150, 518, 598, 613, 633, 678, 810
DpnII GATC 7 cut(s) 148, 516, 596, 611, 631, 676, 808
EaeI YGGCCR 1 cut(s) 1235
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 1212
Eco32I GATATC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 425
Eco57I CTGAAG 2 cut(s) 520, 606
EcoRII CCWGG 1 cut(s) 427
EcoRV GATATC 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 482
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 1212
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 9 cut(s) 26, 155, 193, 223, 288, 422, 665, 836, 925
FaqI GGGAC 3 cut(s) 313, 1043, 1164
FatI CATG 9 cut(s) 22, 151, 189, 219, 284, 418, 661, 832, 921
FauI CCCGC 3 cut(s) 1069, 1105, 1128
FbaI TGATCA 2 cut(s) 148, 676
FblI GTMKAC 1 cut(s) 827
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 1212
FspBI CTAG 4 cut(s) 290, 483, 558, 1259
FspI TGCGCA 1 cut(s) 1093
GlaI GCGC 5 cut(s) 970, 972, 974, 1093, 1124
GsaI CCCAGC 1 cut(s) 999
GsuI CTGGAG 2 cut(s) 450, 1128
HaeIII GGCC 3 cut(s) 206, 269, 1237
HapII CCGG 3 cut(s) 983, 1052, 1234
HgaI GACGC 3 cut(s) 496, 1159, 1166
HhaI GCGC 5 cut(s) 971, 973, 975, 1094, 1125
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 9 cut(s) 26, 155, 193, 223, 288, 422, 665, 836, 925
Hin6I GCGC 5 cut(s) 969, 971, 973, 1092, 1123
HinP1I GCGC 5 cut(s) 969, 971, 973, 1092, 1123
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 616
HpaII CCGG 3 cut(s) 983, 1052, 1234
HphI GGTGA 2 cut(s) 511, 1268
Hpy166II GTNNAC 2 cut(s) 425, 828
Hpy188I TCNGA 3 cut(s) 441, 636, 813
Hpy188III TCNNGA 2 cut(s) 190, 859
Hpy8I GTNNAC 2 cut(s) 425, 828
Hpy99I CGWCG 2 cut(s) 500, 503
HpyAV CCTTC 4 cut(s) 20, 99, 331, 830
HpyCH4III ACNGT 2 cut(s) 38, 93
HpyCH4IV ACGT 2 cut(s) 498, 952
HpyF3I CTNAG 2 cut(s) 272, 440
HpySE526I ACGT 2 cut(s) 498, 952
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 9 cut(s) 26, 155, 193, 223, 288, 422, 665, 836, 925
HspAI GCGC 5 cut(s) 969, 971, 973, 1092, 1123
Ksp22I TGATCA 2 cut(s) 148, 676
KspI CCGCGG 1 cut(s) 566
Kzo9I GATC 7 cut(s) 148, 516, 596, 611, 631, 676, 808
LmnI GCTCC 1 cut(s) 746
LweI GCATC 2 cut(s) 132, 864
MaeI CTAG 4 cut(s) 290, 483, 558, 1259
MaeII ACGT 2 cut(s) 498, 952
MaeIII GTNAC 5 cut(s) 412, 530, 657, 1147, 1285
MalI GATC 7 cut(s) 150, 518, 598, 613, 633, 678, 810
MboI GATC 7 cut(s) 148, 516, 596, 611, 631, 676, 808
MboII GAAGA 6 cut(s) 40, 44, 305, 355, 599, 761
MfeI CAATTG 2 cut(s) 356, 680
MflI RGATCY 2 cut(s) 596, 631
MhlI GDGCHC 2 cut(s) 43, 1212
MluCI AATT 5 cut(s) 356, 649, 680, 803, 910
MmeI TCCRAC 2 cut(s) 724, 939
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 6 cut(s) 165, 281, 551, 777, 801, 1312
MslI CAYNNNNRTG 3 cut(s) 27, 194, 283
MspA1I CMGCKG 1 cut(s) 565
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 3 cut(s) 983, 1052, 1234
MspR9I CCNGG 2 cut(s) 429, 983
MunI CAATTG 2 cut(s) 356, 680
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 1 cut(s) 429
MvnI CGCG 4 cut(s) 565, 971, 973, 1123
NciI CCSGG 1 cut(s) 983
NdeII GATC 7 cut(s) 148, 516, 596, 611, 631, 676, 808
NlaIII CATG 9 cut(s) 26, 155, 193, 223, 288, 422, 665, 836, 925
NlaIV GGNNCC 2 cut(s) 633, 738
NmeAIII GCCGAG 1 cut(s) 1231
NmuCI GTSAC 3 cut(s) 412, 1147, 1285
NsbI TGCGCA 1 cut(s) 1093
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 189
PauI GCGCGC 2 cut(s) 969, 971
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 616
Ple19I CGATCG 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 995
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 2 cut(s) 633, 738
PspPI GGNCC 3 cut(s) 204, 268, 425
PsrI GAACNNNNNNTAC 2 cut(s) 933, 965
PstI CTGCAG 4 cut(s) 88, 1024, 1138, 1306
PstNI CAGNNNCTG 1 cut(s) 1041
PsuI RGATCY 2 cut(s) 596, 631
PteI GCGCGC 2 cut(s) 969, 971
PvuI CGATCG 1 cut(s) 614
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 3 cut(s) 27, 194, 283
SacII CCGCGG 1 cut(s) 566
SaqAI TTAA 6 cut(s) 165, 281, 551, 777, 801, 1312
Sau3AI GATC 7 cut(s) 148, 516, 596, 611, 631, 676, 808
Sau96I GGNCC 3 cut(s) 204, 268, 425
ScrFI CCNGG 2 cut(s) 429, 983
SduI GDGCHC 2 cut(s) 43, 1212
SfaNI GCATC 2 cut(s) 132, 864
SfcI CTRYAG 5 cut(s) 84, 255, 1020, 1134, 1302
Sfr303I CCGCGG 1 cut(s) 566
SgrBI CCGCGG 1 cut(s) 566
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 3 cut(s) 27, 194, 283
SmlI CTYRAG 2 cut(s) 164, 408
SmoI CTYRAG 2 cut(s) 164, 408
SpeI ACTAGT 1 cut(s) 1258
Sse9I AATT 5 cut(s) 356, 649, 680, 803, 910
SspMI CTAG 4 cut(s) 290, 483, 558, 1259
StyD4I CCNGG 2 cut(s) 427, 981
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 38, 93
TaiI ACGT 2 cut(s) 501, 955
TaqI TCGA 2 cut(s) 126, 614
TaqII GACCGA 1 cut(s) 1273
TasI AATT 5 cut(s) 356, 649, 680, 803, 910
TauI GCSGC 3 cut(s) 849, 1035, 1301
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 6 cut(s) 165, 281, 551, 777, 801, 1312
Tru9I TTAA 6 cut(s) 165, 281, 551, 777, 801, 1312
TscAI CASTG 7 cut(s) 43, 96, 880, 1034, 1152, 1219, 1294
TseFI GTSAC 3 cut(s) 412, 1147, 1285
Tsp45I GTSAC 3 cut(s) 412, 1147, 1285
TspRI CASTG 7 cut(s) 43, 96, 880, 1034, 1152, 1219, 1294
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 2 cut(s) 649, 803
XmaJI CCTAGG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 827
XspI CTAG 4 cut(s) 290, 483, 558, 1259
ZraI GACGTC 1 cut(s) 499
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.