Rorug07G0113800

zinc-binding in reverse transcriptase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
8892392 .. 8892976
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0113800.1

Sequence Viewer

Length: 585 bp
ATGAGAGTCCCAGAATTTGAGCAACCACCTATCATTGATAAAGTATTTACGGCCGTTGAACTGGCTGACAACCCCGACTGGCCTATTATTGGTTGCCACATAATGGATGTCACCTTATTTCATCAAATGATCAGTGATAGGTGCACGGCCTATCAATTAGAGTGTTTTGAGAAAGTGAGAATTGATAGTTTGGAAGATACTGTTAGACAGCAACAATGTGTCATTTGTAAGGAGAGCCTTGATCACTTTGAGGGTTTAGAAGAAGGGATTGATCGTGGTCAGCTGATGATTATTCGCTTGTCCTGCTCACATCTTTATCACGAAGATTGCATTGCCCAATGGCTTGCGAATAGTCAGTTCTGTCCCATATGCCGATGCTCAATGCCAGTTGTGGAACAGGCGATGCCGGTTGTTGAACAGGAGATGCCGGTTGTGGAACAGGTGATGTCAGTTGTGGAAGAGGCGACTGAACCATCAAAACCATCATGGCGGCATCTGCATTGGCCTATGCTGCTCACAGCATCTGTGGGTGGTATATTAACTGCTATGCTGGTATGTAGATTATTGAAGCGAAGCCAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

194

Amino Acids

22.24

Weight (kDa)

4.85

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 71 - 125 1.2e-09 Ring finger domain
zf-rbx1 PF12678 72 - 125 5.7e-10 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 101 - 124 3.5e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 1 cut(s) 490
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 14
AfiI CCNNNNNNNGG 2 cut(s) 89, 103
AgsI TTSAA 3 cut(s) 59, 416, 568
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw21I GWGCWC 1 cut(s) 146
Alw44I GTGCAC 1 cut(s) 142
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 4 cut(s) 51, 80, 147, 503
ApaLI GTGCAC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 511
ApoI RAATTY 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 103, 454
BaeGI GKGCMC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 498
BccI CCATC 2 cut(s) 481, 490
BceAI ACGGC 3 cut(s) 38, 66, 162
BclI TGATCA 2 cut(s) 129, 241
BisI GCNGC 2 cut(s) 491, 512
BlsI GCNGC 2 cut(s) 492, 513
BmsI GCATC 5 cut(s) 365, 393, 414, 502, 530
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 103
Bse118I RCCGGY 2 cut(s) 406, 427
Bse1I ACTGG 3 cut(s) 66, 83, 386
Bse3DI GCAATG 1 cut(s) 330
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 2 cut(s) 89, 103
BseMI GCAATG 1 cut(s) 330
BseNI ACTGG 3 cut(s) 66, 83, 386
BseSI GKGCMC 1 cut(s) 146
BseX3I CGGCCG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 4 cut(s) 53, 82, 149, 505
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 2 cut(s) 407, 428
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 89, 103
BsmFI GGGAC 1 cut(s) 348
BsnI GGCC 4 cut(s) 53, 82, 149, 505
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 3 cut(s) 129, 241, 271
BspACI CCGC 1 cut(s) 490
BspANI GGCC 4 cut(s) 53, 82, 149, 505
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 2 cut(s) 406, 427
BsrI ACTGG 3 cut(s) 66, 83, 386
BssAI RCCGGY 2 cut(s) 406, 427
BssMI GATC 3 cut(s) 129, 241, 271
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 345
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 3 cut(s) 132, 244, 274
BstMBI GATC 3 cut(s) 129, 241, 271
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 3 cut(s) 303, 496, 511
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 498
BstZI CGGCCG 1 cut(s) 51
BsuRI GGCC 4 cut(s) 53, 82, 149, 505
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 345
CaiI CAGNNNCTG 1 cut(s) 524
Cfr10I RCCGGY 2 cut(s) 406, 427
CviAII CATG 1 cut(s) 486
CviJI RGCY 9 cut(s) 53, 65, 82, 149, 237, 283, 343, 505, 576
CviKI_1 RGCY 9 cut(s) 53, 65, 82, 149, 237, 283, 343, 505, 576
DpnI GATC 3 cut(s) 131, 243, 273
DpnII GATC 3 cut(s) 129, 241, 271
EaeI YGGCCR 1 cut(s) 51
EagI CGGCCG 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EclXI CGGCCG 1 cut(s) 51
Eco52I CGGCCG 1 cut(s) 51
FaeI CATG 1 cut(s) 489
FaiI YATR 8 cut(s) 101, 368, 370, 487, 509, 536, 548, 556
FaqI GGGAC 1 cut(s) 348
FatI CATG 1 cut(s) 485
FauNDI CATATG 1 cut(s) 368
FbaI TGATCA 2 cut(s) 129, 241
Fnu4HI GCNGC 2 cut(s) 491, 512
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 491, 512
GluI GCNGC 2 cut(s) 491, 512
HaeIII GGCC 4 cut(s) 53, 82, 149, 505
HapII CCGG 2 cut(s) 407, 428
Hin1II CATG 1 cut(s) 489
HinfI GANTC 1 cut(s) 6
HpaII CCGG 2 cut(s) 407, 428
HphI GGTGA 2 cut(s) 103, 454
Hpy166II GTNNAC 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 144, 330, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 303, 496, 511
Hsp92II CATG 1 cut(s) 489
Ksp22I TGATCA 2 cut(s) 129, 241
Kzo9I GATC 3 cut(s) 129, 241, 271
Lsp1109I GCAGC 1 cut(s) 498
LweI GCATC 5 cut(s) 365, 393, 414, 502, 530
MaeIII GTNAC 1 cut(s) 109
MalI GATC 3 cut(s) 131, 243, 273
MboI GATC 3 cut(s) 129, 241, 271
MboII GAAGA 4 cut(s) 206, 272, 335, 470
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 3 cut(s) 14, 155, 180
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 2 cut(s) 244, 454
MseI TTAA 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 2 cut(s) 407, 428
MwoI GCNNNNNNNGC 3 cut(s) 303, 496, 511
NdeI CATATG 1 cut(s) 368
NdeII GATC 3 cut(s) 129, 241, 271
NlaIII CATG 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 103
PkrI GCNGC 2 cut(s) 492, 513
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 524
PvuII CAGCTG 1 cut(s) 283
SaqAI TTAA 1 cut(s) 539
SatI GCNGC 2 cut(s) 491, 512
Sau3AI GATC 3 cut(s) 129, 241, 271
SchI GAGTC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 146
SetI ASST 5 cut(s) 31, 116, 143, 285, 444
SfaNI GCATC 5 cut(s) 365, 393, 414, 502, 530
Sse9I AATT 3 cut(s) 14, 155, 180
SsiI CCGC 1 cut(s) 490
TaaI ACNGT 1 cut(s) 202
TasI AATT 3 cut(s) 14, 155, 180
TauI GCSGC 1 cut(s) 493
Tru1I TTAA 1 cut(s) 539
Tru9I TTAA 1 cut(s) 539
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 110
TspRI CASTG 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 103
VneI GTGCAC 1 cut(s) 142
XapI RAATTY 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.