Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003722.1

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Reverse (-)

189008 .. 191026

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003722.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgctattgctggacttaaaatgtgtccataagctccaacccttcatcacctatttttttgcagatgatagtttcttgtttggcactgctatagaaggggaatgctacaagtttaaagaaatacttgacacatatgaacgagcctcaggacacaaggtgaattatcagaacagcagtatggcatttagcaagaatgtggacatggagacacaaaataggtttgcttctattctagatgtggaaagagtggatgagcatgacagatatttaggtttaactttaagagttggtagatcaaagacggcgatttttggggcttgcaacaatctcttgcccacaagggagatattaacaactaaaggctatactggaaacatagagtgtttgctatgccatcatcacatagaagacaactatcatctcttctgtaagtgtcctctagccatgaaaatagtctctgcccctccgtttaatttacaacacactttgttgcctaatatgagtttcaaagaatggatgcttgaaagggcgcaacacctcaaacctgaaactctagagaagctgatgatgattgtttgggctttatggaagaaccgaaacaatgttctttgggaaggaaaggttcaaaatgctcaagatctggttttaagctgctttacatggctaactgagttccagaaatccagatgcagtactacatccacacaaaggtcagtgcggcccaaatggaaaccaccatcgcagggtttcaagttgaatgttgatgcaaccttccttcccaaccaaattcatggtggaatcgggggagtattaagggactcgataggtttacaaaacgtgagtgttgaaagtgactgcatggaagccatccctgaagcaaactgcaaagattatgctttgttagctaatggaggcctagtggatgatattcaggaagtgtggagtaggctgcatggtgtgaccatatgtcacactccgagaacctacaatgcggtggttcactgcctagctagcagctttagattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

342

Amino Acids

39.07

Weight (kDa)

7.17

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	718, 992
AcsI	RAATTY	1 cut(s)	786
AcuI	CTGAAG	1 cut(s)	894
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	2 cut(s)	708, 743
AgsI	TTSAA	6 cut(s)	508, 524, 626, 751, 757, 848
AhdI	GACNNNNNGTC	1 cut(s)	966
AluBI	AGCT	6 cut(s)	34, 562, 651, 905, 1010, 1017
AluI	AGCT	6 cut(s)	34, 562, 651, 905, 1010, 1017
Alw26I	GTCTC	2 cut(s)	200, 460
AoxI	GGCC	2 cut(s)	719, 913
ApeKI	GCWGC	3 cut(s)	651, 949, 1014
ApoI	RAATTY	1 cut(s)	786
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	720
AsuHPI	GGTGA	2 cut(s)	40, 169
AsuNHI	GCTAGC	1 cut(s)	1010
AxyI	CCTNAGG	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	638, 936
BccI	CCATC	3 cut(s)	402, 745, 875
BceAI	ACGGC	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	200, 460
BfaI	CTAG	6 cut(s)	233, 440, 554, 917, 1007, 1011
BfmI	CTRYAG	1 cut(s)	90
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	4 cut(s)	652, 719, 950, 1015
BlsI	GCNGC	4 cut(s)	653, 720, 951, 1016
BmcAI	AGTACT	1 cut(s)	694
BmeRI	GACNNNNNGTC	1 cut(s)	966
BmgT120I	GGNCC	1 cut(s)	720
BmsI	GCATC	3 cut(s)	507, 677, 754
BmtI	GCTAGC	1 cut(s)	1014
BpiI	GAAGAC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	618
BsaXI	ACNNNNNCTCC	2 cut(s)	903, 933
Bsc4I	CCNNNNNNNGG	2 cut(s)	708, 743
Bse1I	ACTGG	1 cut(s)	373
Bse21I	CCTNAGG	1 cut(s)	145
BseGI	GGATG	5 cut(s)	256, 522, 698, 867, 928
BseLI	CCNNNNNNNGG	2 cut(s)	708, 743
BseMII	CTCAG	2 cut(s)	159, 660
BseNI	ACTGG	1 cut(s)	373
BseXI	GCAGC	2 cut(s)	638, 936
BshFI	GGCC	2 cut(s)	721, 915
BslFI	GGGAC	1 cut(s)	830
BslI	CCNNNNNNNGG	2 cut(s)	708, 743
BsmAI	GTCTC	2 cut(s)	200, 460
BsmFI	GGGAC	1 cut(s)	830
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	721, 915
Bsp143I	GATC	2 cut(s)	293, 637
BspACI	CCGC	2 cut(s)	718, 992
BspANI	GGCC	2 cut(s)	721, 915
BspCNI	CTCAG	2 cut(s)	158, 661
BspOI	GCTAGC	1 cut(s)	1014
BsrI	ACTGG	1 cut(s)	373
BssMI	GATC	2 cut(s)	293, 637
Bst6I	CTCTTC	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	319, 1012
BstDEI	CTNAG	2 cut(s)	145, 669
BstF5I	GGATG	5 cut(s)	256, 522, 698, 867, 928
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	2 cut(s)	296, 640
BstMAI	GTCTC	2 cut(s)	200, 460
BstMBI	GATC	2 cut(s)	293, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	902, 1011
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	638, 936
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	637
BstXI	CCANNNNNNTGG	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	637
Bsu36I	CCTNAGG	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	721, 915
BtgZI	GCGATG	1 cut(s)	723
BtsCI	GGATG	5 cut(s)	256, 522, 698, 867, 928
BtsI	GCAGTG	2 cut(s)	84, 1000
BtsIMutI	CAGTG	3 cut(s)	84, 720, 1000
Cac8I	GCNNGC	2 cut(s)	319, 1012
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	720
Csp6I	GTAC	1 cut(s)	693
CviAII	CATG	7 cut(s)	202, 257, 445, 660, 791, 859, 953
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	2 cut(s)	145, 669
DpnI	GATC	2 cut(s)	295, 639
DpnII	GATC	2 cut(s)	293, 637
DraI	TTTAAA	1 cut(s)	115
DraIII	CACNNNGTG	1 cut(s)	157
DriI	GACNNNNNGTC	1 cut(s)	966
Eam1104I	CTCTTC	1 cut(s)	428
Eam1105I	GACNNNNNGTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	428
Eco147I	AGGCCT	1 cut(s)	915
Eco57I	CTGAAG	1 cut(s)	894
Eco81I	CCTNAGG	1 cut(s)	145
FaeI	CATG	7 cut(s)	205, 260, 448, 663, 794, 862, 956
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	7 cut(s)	201, 256, 444, 659, 790, 858, 952
FauNDI	CATATG	2 cut(s)	133, 965
Fnu4HI	GCNGC	4 cut(s)	652, 719, 950, 1015
FokI	GGATG	5 cut(s)	263, 529, 685, 854, 935
Fsp4HI	GCNGC	4 cut(s)	652, 719, 950, 1015
FspBI	CTAG	6 cut(s)	233, 440, 554, 917, 1007, 1011
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	4 cut(s)	652, 719, 950, 1015
HaeIII	GGCC	2 cut(s)	721, 915
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	7 cut(s)	205, 260, 448, 663, 794, 862, 956
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HinfI	GANTC	2 cut(s)	798, 818
HphI	GGTGA	2 cut(s)	40, 169
Hpy166II	GTNNAC	3 cut(s)	199, 830, 1000
Hpy188I	TCNGA	2 cut(s)	168, 978
Hpy188III	TCNNGA	7 cut(s)	147, 233, 554, 635, 676, 684, 932
Hpy8I	GTNNAC	3 cut(s)	199, 830, 1000
HpyAV	CCTTC	5 cut(s)	52, 89, 608, 781, 785
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	7 cut(s)	62, 321, 690, 767, 858, 885, 952
HpyF10VI	GCNNNNNNNGC	2 cut(s)	902, 1011
HpyF3I	CTNAG	2 cut(s)	145, 669
HpySE526I	ACGT	1 cut(s)	837
Hsp92II	CATG	7 cut(s)	205, 260, 448, 663, 794, 862, 956
HspAI	GCGC	1 cut(s)	530
Kzo9I	GATC	2 cut(s)	293, 637
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	9 cut(s)	132, 354, 558, 626, 689, 697, 728, 885, 917
Lsp1109I	GCAGC	2 cut(s)	638, 936
LweI	GCATC	3 cut(s)	507, 677, 754
MaeI	CTAG	6 cut(s)	233, 440, 554, 917, 1007, 1011
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	3 cut(s)	851, 958, 968
MalI	GATC	2 cut(s)	295, 639
MboI	GATC	2 cut(s)	293, 637
MboII	GAAGA	3 cut(s)	415, 419, 601
MflI	RGATCY	1 cut(s)	637
MluCI	AATT	3 cut(s)	160, 472, 786
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	5 cut(s)	154, 447, 474, 548, 905
MseI	TTAA	8 cut(s)	17, 114, 275, 281, 350, 471, 647, 812
Mva1269I	GAATGC	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	902, 1011
NdeI	CATATG	2 cut(s)	133, 965
NdeII	GATC	2 cut(s)	293, 637
NheI	GCTAGC	1 cut(s)	1010
NlaIII	CATG	7 cut(s)	205, 260, 448, 663, 794, 862, 956
NmuCI	GTSAC	3 cut(s)	851, 958, 968
PceI	AGGCCT	1 cut(s)	915
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	798
PkrI	GCNGC	4 cut(s)	653, 720, 951, 1016
PleI	GAGTC	1 cut(s)	812
PpsI	GAGTC	1 cut(s)	812
PspPI	GGNCC	1 cut(s)	720
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
SaqAI	TTAA	8 cut(s)	17, 114, 275, 281, 350, 471, 647, 812
SatI	GCNGC	4 cut(s)	652, 719, 950, 1015
Sau3AI	GATC	2 cut(s)	293, 637
Sau96I	GGNCC	1 cut(s)	720
ScaI	AGTACT	1 cut(s)	694
SchI	GAGTC	1 cut(s)	812
SfaNI	GCATC	3 cut(s)	507, 677, 754
SfcI	CTRYAG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
Sse9I	AATT	3 cut(s)	160, 472, 786
SseBI	AGGCCT	1 cut(s)	915
SsiI	CCGC	2 cut(s)	718, 992
SspMI	CTAG	6 cut(s)	233, 440, 554, 917, 1007, 1011
StuI	AGGCCT	1 cut(s)	915
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	1 cut(s)	821
TasI	AATT	3 cut(s)	160, 472, 786
TatI	WGTACW	1 cut(s)	692
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	1 cut(s)	798
Tru1I	TTAA	8 cut(s)	17, 114, 275, 281, 350, 471, 647, 812
Tru9I	TTAA	8 cut(s)	17, 114, 275, 281, 350, 471, 647, 812
TscAI	CASTG	3 cut(s)	91, 720, 1007
TseFI	GTSAC	3 cut(s)	851, 958, 968
TseI	GCWGC	3 cut(s)	651, 949, 1014
Tsp45I	GTSAC	3 cut(s)	851, 958, 968
TspDTI	ATGAA	4 cut(s)	34, 150, 461, 779
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	3 cut(s)	91, 720, 1007
XapI	RAATTY	1 cut(s)	786
XbaI	TCTAGA	2 cut(s)	232, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	791
XspI	CTAG	6 cut(s)	233, 440, 554, 917, 1007, 1011
ZrmI	AGTACT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.