Rmu_sc0005693.1_g000013

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005693.1
OG0002539
Physical Location & Seq
Forward (+)
34452 .. 34964
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005693.1_g000013.1.cds

Sequence Viewer

Length: 513 bp
atggaggtcatgcagcatgttctaacatccacttcatttggagatccctacaaggagttatggcacaacatttggaaggccaaagtccctggcaaagtcagtatatgtgtgtggcaggcattcaacaatttacttgccaccagggatcgtttactcaccaaaggatacacaggtgaggtacattgtctattgtgtcctcatggtttggaggatatatcccatcttttctgccaatgtcctctagcctcaaccatgctgtcttctcctcctttcaatctcgaaagtgaattactctcggtctcaaacttcaaagattggatgcttgatcggtcccttaccctaagtggtgagatttttgccaaactaaggatgattatctgggcaatttggaagaacagaaacaacttgctgtggaatggcacacaacaaatggcccaggacattattctgagttgttttacatggctggctgagtttctgaaagccagaacttcttctagacataagcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

170

Amino Acids

19.63

Weight (kDa)

8.57

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 38, 153
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 3 cut(s) 124, 274, 310
AjnI CCWGG 3 cut(s) 88, 140, 435
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 38, 153
AoxI GGCC 2 cut(s) 78, 432
ApeKI GCWGC 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 493
AspS9I GGNCC 2 cut(s) 330, 433
AsuHPI GGTGA 3 cut(s) 148, 185, 359
AvaII GGWCC 1 cut(s) 330
BaeI ACNNNNGTAYC 2 cut(s) 157, 190
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 228
BciT130I CCWGG 3 cut(s) 90, 142, 437
BciVI GTATCC 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 2 cut(s) 242, 498
BfuI GTATCC 1 cut(s) 158
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme1390I CCNGG 3 cut(s) 90, 142, 437
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 2 cut(s) 330, 433
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 3 cut(s) 90, 142, 437
BmsI GCATC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 3 cut(s) 88, 141, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 374
BseBI CCWGG 3 cut(s) 90, 142, 437
BseDI CCNNGG 3 cut(s) 88, 141, 435
BseGI GGATG 3 cut(s) 26, 324, 375
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 440, 462
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 2 cut(s) 80, 434
BslFI GGGAC 2 cut(s) 71, 316
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 2 cut(s) 71, 316
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 2 cut(s) 80, 434
Bso31I GGTCTC 1 cut(s) 304
Bsp143I GATC 3 cut(s) 43, 145, 325
BspANI GGCC 2 cut(s) 80, 434
BspCNI CTCAG 2 cut(s) 441, 463
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 2 cut(s) 38, 153
BspTNI GGTCTC 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 88, 141, 435
BssMI GATC 3 cut(s) 43, 145, 325
Bst2UI CCWGG 3 cut(s) 90, 142, 437
BstC8I GCNNGC 2 cut(s) 117, 468
BstDEI CTNAG 4 cut(s) 341, 365, 449, 471
BstF5I GGATG 3 cut(s) 26, 324, 375
BstKTI GATC 3 cut(s) 46, 148, 328
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 3 cut(s) 43, 145, 325
BstNI CCWGG 3 cut(s) 90, 142, 437
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 3 cut(s) 88, 140, 435
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuI GTATCC 1 cut(s) 158
BsuRI GGCC 2 cut(s) 80, 434
BtsCI GGATG 3 cut(s) 26, 324, 375
Cac8I GCNNGC 2 cut(s) 117, 468
Cfr13I GGNCC 2 cut(s) 330, 433
Csp6I GTAC 1 cut(s) 179
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 5 cut(s) 10, 17, 200, 253, 462
CviJI RGCY 6 cut(s) 80, 245, 434, 466, 470, 485
CviKI_1 RGCY 6 cut(s) 80, 245, 434, 466, 470, 485
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 4 cut(s) 341, 365, 449, 471
DpnI GATC 3 cut(s) 45, 147, 327
DpnII GATC 3 cut(s) 43, 145, 325
Eco31I GGTCTC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 330
EcoRII CCWGG 3 cut(s) 88, 140, 435
FaeI CATG 5 cut(s) 13, 20, 203, 256, 465
FaqI GGGAC 2 cut(s) 71, 316
FatI CATG 5 cut(s) 9, 16, 199, 252, 461
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 3 cut(s) 13, 331, 382
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 2 cut(s) 242, 498
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 2 cut(s) 80, 434
Hin1II CATG 5 cut(s) 13, 20, 203, 256, 465
HphI GGTGA 3 cut(s) 148, 185, 359
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 450, 480
Hpy188III TCNNGA 2 cut(s) 278, 498
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 13
HpyF3I CTNAG 4 cut(s) 341, 365, 449, 471
Hsp92II CATG 5 cut(s) 13, 20, 203, 256, 465
Kzo9I GATC 3 cut(s) 43, 145, 325
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 309
MaeI CTAG 2 cut(s) 242, 498
MalI GATC 3 cut(s) 45, 147, 327
MboI GATC 3 cut(s) 43, 145, 325
MboII GAAGA 3 cut(s) 252, 403, 486
MflI RGATCY 1 cut(s) 43
MluCI AATT 3 cut(s) 127, 287, 384
MnlI CCTC 6 cut(s) 169, 202, 207, 249, 256, 276
MroXI GAANNNNTTC 1 cut(s) 493
MspR9I CCNGG 3 cut(s) 90, 142, 437
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 3 cut(s) 90, 142, 437
NdeII GATC 3 cut(s) 43, 145, 325
NlaIII CATG 5 cut(s) 13, 20, 203, 256, 465
NlaIV GGNNCC 1 cut(s) 332
NspI RCATGY 1 cut(s) 20
PctI GAATGC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 493
PkrI GCNGC 1 cut(s) 15
Psp6I CCWGG 3 cut(s) 88, 140, 435
PspGI CCWGG 3 cut(s) 88, 140, 435
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 2 cut(s) 330, 433
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 43, 145, 325
Sau96I GGNCC 2 cut(s) 330, 433
ScrFI CCNGG 3 cut(s) 90, 142, 437
SetI ASST 3 cut(s) 9, 175, 180
SfaNI GCATC 1 cut(s) 309
SinI GGWCC 1 cut(s) 330
Sse9I AATT 3 cut(s) 127, 287, 384
SspMI CTAG 2 cut(s) 242, 498
StyD4I CCNGG 3 cut(s) 88, 140, 435
TaqI TCGA 1 cut(s) 279
TaqII GACCGA 2 cut(s) 286, 318
TasI AATT 3 cut(s) 127, 287, 384
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 330
XbaI TCTAGA 1 cut(s) 497
XceI RCATGY 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 493
XspI CTAG 2 cut(s) 242, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.