Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001035.1

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Forward (+)

273010 .. 275396

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001035.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgcttgccaagcagggttggagacttgtctcaaacccaaactcactcattactaagttgtacaaagctagatactttccaaattgcaccttttgggaagctgatgtaggagactccccatccttctcttggcgcagtattttgaatgggaggcctgtgttaaaagctgagcccaagataggctctcgtggagcccggacaaacgaggcagatttacagttaaaaacggcctattgggtggcacgaaattctgttcttggcaatctacttaatagtacttatgttggtgacccttttggtacactgtggaaaacaatttggaaagcccgagtaccaggcaaagtccaaatatgcatatggagagctgcacagaacctactccctactcgtgaacaattaaccatgaaaggctacactggggataccggttgtctactctgtactcacaggttcgaaaccactacccatcttttttgtcaatgtccaattgctttagagttactctttgcccctcctcttctgcttcaaagtaccttgttgccctcaattaattttaaggaatggctacttgagcgtgcaatgcatcttaatattgatgtttttgagaagttgatgatgctgatttgggcattatggcagaatcagaacagtatgttatgggaaaatgtttcacaagcggcttcacatattatgctatcctctatgacatggctgaaggaatttcaacaagccagggctgcaaataccaatgttgggctggaattgagagcaaataagcaaagatggaaactagaattggagccaagatgcaaattgaatgtcgatggtgcttttctccctcaaatgatcagaggtgcaaagcaaatagagttactagccattagagatggtcttgatttagctaagggtttgaagctgcataatgtcaccgtagagagtgactgtttggaggtagtccaaacaatctttagtgaagaacataaccttgacgagaatggtgctatattggatgatatctctgtccttatgcagaatgttccggcgactatcattgaacaaggcggcgacgcctccatcttttccctccactgcgacataatcacatcccacatcctcacccgcctgaactgtcccacccttgcctccgccgcatgtgcttcctcacaattgcaggccttctccgccaaacagacactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

399

Amino Acids

44.88

Weight (kDa)

8.25

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	433
AciI	CCGC	6 cut(s)	677, 1062, 1120, 1146, 1149, 1182
AcsI	RAATTY	2 cut(s)	247, 719
AcuI	CTGAAG	1 cut(s)	734
AcyI	GRCGYC	1 cut(s)	1068
AfaI	GTAC	6 cut(s)	62, 277, 301, 333, 442, 532
AfiI	CCNNNNNNNGG	3 cut(s)	129, 179, 753
AgeI	ACCGGT	1 cut(s)	425
AgsI	TTSAA	6 cut(s)	145, 527, 725, 817, 913, 1055
AjnI	CCWGG	2 cut(s)	334, 731
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
AluBI	AGCT	6 cut(s)	68, 101, 167, 365, 902, 916
AluI	AGCT	6 cut(s)	68, 101, 167, 365, 902, 916
Alw26I	GTCTC	3 cut(s)	16, 34, 105
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	3 cut(s)	152, 228, 1173
ApeKI	GCWGC	3 cut(s)	365, 737, 916
ApoI	RAATTY	2 cut(s)	247, 719
ArsI	GACNNNNNNTTYG	2 cut(s)	804, 836
AseI	ATTAAT	1 cut(s)	549
AsiGI	ACCGGT	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	135
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	3 cut(s)	299, 919, 1108
AsuII	TTCGAA	1 cut(s)	453
AvaI	CYCGRG	1 cut(s)	327
BanII	GRGCYC	2 cut(s)	174, 196
BauI	CACGAG	2 cut(s)	186, 387
BbvI	GCAGC	3 cut(s)	352, 724, 903
BccI	CCATC	6 cut(s)	127, 474, 777, 818, 881, 1082
BceAI	ACGGC	1 cut(s)	243
BcgI	CGANNNNNNTGC	2 cut(s)	980, 1014
BciT130I	CCWGG	2 cut(s)	336, 733
BciVI	GTATCC	1 cut(s)	415
BclI	TGATCA	1 cut(s)	846
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	16, 34, 105
BfaI	CTAG	3 cut(s)	69, 791, 875
BfuI	GTATCC	1 cut(s)	415
BisI	GCNGC	6 cut(s)	366, 678, 738, 917, 1063, 1149
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	6 cut(s)	367, 679, 739, 918, 1064, 1150
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	3 cut(s)	196, 336, 733
BmeT110I	CYCGRG	1 cut(s)	327
BmiI	GGNNCC	2 cut(s)	193, 801
BmrFI	CCNGG	3 cut(s)	196, 336, 733
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	3 cut(s)	592, 606, 797
BmuI	ACTGGG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	903
Bpu1102I	GCTNAGC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	1068
BsaJI	CCNNGG	1 cut(s)	732
BsaWI	WCCGGW	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 179, 753
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	2 cut(s)	336, 733
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	4 cut(s)	119, 1015, 1103, 1110
BseLI	CCNNNNNNNGG	3 cut(s)	129, 179, 753
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	504
BseXI	GCAGC	3 cut(s)	352, 724, 903
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	154, 230, 1175
BshTI	ACCGGT	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	3 cut(s)	196, 426, 1040
BslFI	GGGAC	1 cut(s)	1116
BslI	CCNNNNNNNGG	3 cut(s)	129, 179, 753
BsmAI	GTCTC	3 cut(s)	16, 34, 105
BsmFI	GGGAC	1 cut(s)	1116
BsnI	GGCC	3 cut(s)	154, 230, 1175
BsoBI	CYCGRG	1 cut(s)	327
Bsp119I	TTCGAA	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	174, 196
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	846
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	6 cut(s)	677, 1062, 1120, 1146, 1149, 1182
BspANI	GGCC	3 cut(s)	154, 230, 1175
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	193, 801
BspT104I	TTCGAA	1 cut(s)	453
BsrDI	GCAATG	1 cut(s)	585
BsrFI	RCCGGY	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	1 cut(s)	846
BssNI	GRCGYC	1 cut(s)	1068
BssSI	CACGAG	2 cut(s)	186, 387
Bst2BI	CACGAG	2 cut(s)	186, 387
Bst2UI	CCWGG	2 cut(s)	336, 733
Bst4CI	ACNGT	6 cut(s)	219, 306, 650, 931, 944, 1130
Bst6I	CTCTTC	1 cut(s)	522
BstACI	GRCGYC	1 cut(s)	1068
BstAUI	TGTACA	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	453
BstC8I	GCNNGC	3 cut(s)	6, 576, 1173
BstDEI	CTNAG	3 cut(s)	54, 168, 903
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	4 cut(s)	119, 1015, 1103, 1110
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	1 cut(s)	849
BstMAI	GTCTC	3 cut(s)	16, 34, 105
BstMBI	GATC	1 cut(s)	846
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 571, 580, 737, 1148, 1154, 1181
BstNI	CCWGG	2 cut(s)	336, 733
BstNSI	RCATGY	1 cut(s)	1155
BstPI	GGTNACC	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	194, 334, 731
BstV1I	GCAGC	3 cut(s)	352, 724, 903
BsuI	GTATCC	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	154, 230, 1175
BtsCI	GGATG	4 cut(s)	119, 1015, 1103, 1110
BtsI	GCAGTG	1 cut(s)	1087
BtsIMutI	CAGTG	3 cut(s)	302, 414, 1087
Cac8I	GCNNGC	3 cut(s)	6, 576, 1173
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	425
CseI	GACGC	1 cut(s)	1076
Csp6I	GTAC	6 cut(s)	61, 276, 300, 332, 441, 531
CspAI	ACCGGT	1 cut(s)	425
CviAII	CATG	3 cut(s)	403, 708, 1152
CviQI	GTAC	6 cut(s)	61, 276, 300, 332, 441, 531
DdeI	CTNAG	3 cut(s)	54, 168, 903
DpnI	GATC	1 cut(s)	848
DpnII	GATC	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
EciI	GGCGGA	2 cut(s)	1135, 1171
Eco147I	AGGCCT	2 cut(s)	154, 1175
Eco24I	GRGCYC	2 cut(s)	174, 196
Eco32I	GATATC	1 cut(s)	1015
Eco57I	CTGAAG	1 cut(s)	734
Eco88I	CYCGRG	1 cut(s)	327
Eco91I	GGTNACC	1 cut(s)	287
EcoO65I	GGTNACC	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	334, 731
EcoRV	GATATC	1 cut(s)	1015
EcoT22I	ATGCAT	2 cut(s)	356, 585
EcoT38I	GRGCYC	2 cut(s)	174, 196
FaeI	CATG	3 cut(s)	406, 711, 1155
FaqI	GGGAC	1 cut(s)	1116
FatI	CATG	3 cut(s)	402, 707, 1151
FauI	CCCGC	1 cut(s)	1127
FauNDI	CATATG	1 cut(s)	356
FbaI	TGATCA	1 cut(s)	846
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	6 cut(s)	366, 678, 738, 917, 1063, 1149
FokI	GGATG	4 cut(s)	106, 1022, 1090, 1097
FriOI	GRGCYC	2 cut(s)	174, 196
Fsp4HI	GCNGC	6 cut(s)	366, 678, 738, 917, 1063, 1149
FspBI	CTAG	3 cut(s)	69, 791, 875
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	6 cut(s)	366, 678, 738, 917, 1063, 1149
HaeIII	GGCC	3 cut(s)	154, 230, 1175
HapII	CCGG	3 cut(s)	196, 426, 1040
HgaI	GACGC	1 cut(s)	1076
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	1068
Hin1II	CATG	3 cut(s)	406, 711, 1155
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	113, 640
HpaII	CCGG	3 cut(s)	196, 426, 1040
HphI	GGTGA	3 cut(s)	299, 919, 1108
Hpy166II	GTNNAC	3 cut(s)	302, 392, 434
Hpy188I	TCNGA	2 cut(s)	645, 851
Hpy188III	TCNNGA	2 cut(s)	389, 893
Hpy8I	GTNNAC	3 cut(s)	302, 392, 434
Hpy99I	CGWCG	1 cut(s)	1070
HpyAV	CCTTC	3 cut(s)	133, 709, 1186
HpyCH4III	ACNGT	6 cut(s)	219, 306, 650, 931, 944, 1130
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 571, 580, 737, 1148, 1154, 1181
HpyF3I	CTNAG	3 cut(s)	54, 168, 903
Hsp92I	GRCGYC	1 cut(s)	1068
Hsp92II	CATG	3 cut(s)	406, 711, 1155
HspAI	GCGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	846
Kzo9I	GATC	1 cut(s)	846
LmnI	GCTCC	2 cut(s)	191, 799
Lsp1109I	GCAGC	3 cut(s)	352, 724, 903
LweI	GCATC	3 cut(s)	592, 606, 797
MaeI	CTAG	3 cut(s)	69, 791, 875
MaeIII	GTNAC	5 cut(s)	287, 498, 870, 925, 938
MalI	GATC	1 cut(s)	848
MboI	GATC	1 cut(s)	846
MboII	GAAGA	2 cut(s)	509, 986
MfeI	CAATTG	2 cut(s)	486, 1166
MhlI	GDGCHC	2 cut(s)	174, 196
MlyI	GAGTC	1 cut(s)	107
Mph1103I	ATGCAT	2 cut(s)	356, 585
MseI	TTAA	7 cut(s)	161, 221, 270, 398, 549, 555, 588
MspI	CCGG	3 cut(s)	196, 426, 1040
MspR9I	CCNGG	3 cut(s)	196, 336, 733
MunI	CAATTG	2 cut(s)	486, 1166
MvaI	CCWGG	2 cut(s)	336, 733
MwoI	GCNNNNNNNGC	7 cut(s)	10, 571, 580, 737, 1148, 1154, 1181
NciI	CCSGG	1 cut(s)	196
NdeI	CATATG	1 cut(s)	356
NdeII	GATC	1 cut(s)	846
NlaIII	CATG	3 cut(s)	406, 711, 1155
NlaIV	GGNNCC	2 cut(s)	193, 801
NmuCI	GTSAC	3 cut(s)	287, 925, 938
NsiI	ATGCAT	2 cut(s)	356, 585
NspI	RCATGY	1 cut(s)	1155
NspV	TTCGAA	1 cut(s)	453
PceI	AGGCCT	2 cut(s)	154, 1175
PfeI	GAWTC	1 cut(s)	640
PinAI	ACCGGT	1 cut(s)	425
PkrI	GCNGC	6 cut(s)	367, 679, 739, 918, 1064, 1150
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PshBI	ATTAAT	1 cut(s)	549
Psp6I	CCWGG	2 cut(s)	334, 731
PspEI	GGTNACC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	334, 731
PspN4I	GGNNCC	2 cut(s)	193, 801
RsaI	GTAC	6 cut(s)	62, 277, 301, 333, 442, 532
RsaNI	GTAC	6 cut(s)	61, 276, 300, 332, 441, 531
SaqAI	TTAA	7 cut(s)	161, 221, 270, 398, 549, 555, 588
SatI	GCNGC	6 cut(s)	366, 678, 738, 917, 1063, 1149
Sau3AI	GATC	1 cut(s)	846
ScaI	AGTACT	1 cut(s)	277
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	196, 336, 733
SduI	GDGCHC	2 cut(s)	174, 196
SfaNI	GCATC	3 cut(s)	592, 606, 797
SfuI	TTCGAA	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
SseBI	AGGCCT	2 cut(s)	154, 1175
SsiI	CCGC	6 cut(s)	677, 1062, 1120, 1146, 1149, 1182
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	3 cut(s)	69, 791, 875
StuI	AGGCCT	2 cut(s)	154, 1175
StyD4I	CCNGG	3 cut(s)	194, 334, 731
TaaI	ACNGT	6 cut(s)	219, 306, 650, 931, 944, 1130
TaqI	TCGA	2 cut(s)	453, 822
TatI	WGTACW	3 cut(s)	60, 275, 440
TauI	GCSGC	3 cut(s)	680, 1065, 1151
TfiI	GAWTC	1 cut(s)	640
Tru1I	TTAA	7 cut(s)	161, 221, 270, 398, 549, 555, 588
Tru9I	TTAA	7 cut(s)	161, 221, 270, 398, 549, 555, 588
TscAI	CASTG	3 cut(s)	309, 421, 1094
TseFI	GTSAC	3 cut(s)	287, 925, 938
TseI	GCWGC	3 cut(s)	365, 737, 916
Tsp45I	GTSAC	3 cut(s)	287, 925, 938
TspDTI	ATGAA	1 cut(s)	419
TspRI	CASTG	3 cut(s)	309, 421, 1094
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	2 cut(s)	247, 719
XceI	RCATGY	1 cut(s)	1155
XcmI	CCANNNNNNNNNTGG	2 cut(s)	126, 754
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	3 cut(s)	69, 791, 875
ZrmI	AGTACT	1 cut(s)	277
Zsp2I	ATGCAT	2 cut(s)	356, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.