Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000841.1

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Reverse (-)

13224 .. 15516

Gene Structure 2293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000841.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgggtttggaagggcatgttaatgatgaccacatggcagctgaggcagaggagaagggtccggtagtaggcccagcattgaagcctagacagactggagccagggttgccgatttcgatgggaaggcagctccgtctagtgttgctcctcgaggcctcgctaacgtcatcgtcaaggagggggattctcaagccatgcctcgtggccgccgaaggaaagcaagatggttaagaactaaggagtcctcctctaatggtgatccatttcggaacttatggcggagactatggaaagcaaaagttccggacaaggtccaaatatgtgtgtggcgagcgtgcagtaatttgttacccacaagagaacgattaaggcttaaaggctatgagggagagctcaggtgcctacaatgcaatcatcagctagaggatactgcccatctcttttgtaagtgccctacagcttccactttattatctcaacctccattcaatctccagaattctttacttcctaacatcaactttaaagagtggtcgttggaacaggctttaaacctcaaatcggacacttttgaaaacctactgatgatcatatggggattatggactaaccgaaatacgaaattgtgggaggacaatgctaggagtgctgctgacattttccttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

223

Amino Acids

25.22

Weight (kDa)

9.36

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	399
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	2 cut(s)	208, 280
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	499
AfiI	CCNNNNNNNGG	2 cut(s)	68, 562
AgsI	TTSAA	3 cut(s)	82, 490, 575
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	5 cut(s)	41, 131, 394, 421, 461
AluI	AGCT	5 cut(s)	41, 131, 394, 421, 461
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	3 cut(s)	70, 154, 205
ApeKI	GCWGC	3 cut(s)	38, 128, 650
ApoI	RAATTY	1 cut(s)	499
AspS9I	GGNCC	3 cut(s)	59, 71, 313
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	2 cut(s)	59, 313
BaeGI	GKGCMC	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	396
BauI	CACGAG	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	396
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	3 cut(s)	50, 140, 637
BccI	CCATC	3 cut(s)	113, 219, 444
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	421
BclI	TGATCA	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	4 cut(s)	87, 138, 422, 642
BfmI	CTRYAG	1 cut(s)	456
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	4 cut(s)	39, 129, 208, 651
BlsI	GCNGC	4 cut(s)	40, 130, 209, 652
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	2 cut(s)	59, 313
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	3 cut(s)	59, 71, 313
BmiI	GGNNCC	3 cut(s)	60, 100, 401
BmrFI	CCNGG	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	2 cut(s)	117, 479
Bpu10I	CCTNAGC	2 cut(s)	42, 395
BpuEI	CTTGAG	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	102, 664
BsaWI	WCCGGW	2 cut(s)	61, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 562
Bse1I	ACTGG	1 cut(s)	100
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	102, 664
BseLI	CCNNNNNNNGG	2 cut(s)	68, 562
BseMII	CTCAG	2 cut(s)	33, 409
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	3 cut(s)	65, 138, 238
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	3 cut(s)	50, 140, 637
BseYI	CCCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	358
BshFI	GGCC	3 cut(s)	72, 156, 207
BshNI	GGYRCC	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	62, 305
BslI	CCNNNNNNNGG	2 cut(s)	68, 562
BsmAI	GTCTC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	72, 156, 207
BsoBI	CYCGRG	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	396, 455
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	259, 588
BspACI	CCGC	2 cut(s)	208, 280
BspANI	GGCC	3 cut(s)	72, 156, 207
BspCNI	CTCAG	2 cut(s)	34, 408
BspEI	TCCGGA	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	60, 100, 401
BspPI	GGATC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	102, 664
BssMI	GATC	2 cut(s)	259, 588
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	664
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	333, 337
BstDEI	CTNAG	3 cut(s)	42, 237, 395
BstKTI	GATC	2 cut(s)	262, 591
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	259, 588
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 107, 408, 647
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	455
BstV1I	GCAGC	3 cut(s)	50, 140, 637
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	3 cut(s)	72, 156, 207
Cac8I	GCNNGC	2 cut(s)	333, 337
Cfr13I	GGNCC	3 cut(s)	59, 71, 313
CviAII	CATG	3 cut(s)	17, 34, 196
DdeI	CTNAG	3 cut(s)	42, 237, 395
DpnI	GATC	2 cut(s)	261, 590
DpnII	GATC	2 cut(s)	259, 588
DraI	TTTAAA	2 cut(s)	526, 552
EaeI	YGGCCR	1 cut(s)	205
EciI	GGCGGA	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	664
Eco147I	AGGCCT	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	59, 313
Eco53kI	GAGCTC	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	664
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	3 cut(s)	20, 37, 199
FatI	CATG	3 cut(s)	16, 33, 195
FauNDI	CATATG	1 cut(s)	593
FbaI	TGATCA	1 cut(s)	588
Fnu4HI	GCNGC	4 cut(s)	39, 129, 208, 651
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	4 cut(s)	39, 129, 208, 651
FspBI	CTAG	4 cut(s)	87, 138, 422, 642
GluI	GCNGC	4 cut(s)	39, 129, 208, 651
GsaI	CCCAGC	1 cut(s)	77
GsuI	CTGGAG	2 cut(s)	117, 479
HaeIII	GGCC	3 cut(s)	72, 156, 207
HapII	CCGG	2 cut(s)	62, 305
Hin1II	CATG	3 cut(s)	20, 37, 199
HinfI	GANTC	2 cut(s)	185, 242
HpaII	CCGG	2 cut(s)	62, 305
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	2 cut(s)	270, 565
Hpy188III	TCNNGA	2 cut(s)	305, 496
HpyAV	CCTTC	4 cut(s)	5, 49, 118, 207
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	339, 411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 107, 408, 647
HpyF3I	CTNAG	3 cut(s)	42, 237, 395
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	20, 37, 199
Kpn2I	TCCGGA	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	2 cut(s)	259, 588
LmnI	GCTCC	3 cut(s)	98, 136, 151
LpnPI	CCDG	9 cut(s)	75, 81, 87, 88, 115, 318, 382, 509, 530
Lsp1109I	GCAGC	3 cut(s)	50, 140, 637
MaeI	CTAG	4 cut(s)	87, 138, 422, 642
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	2 cut(s)	261, 590
MboI	GATC	2 cut(s)	259, 588
MhlI	GDGCHC	2 cut(s)	396, 455
MluCI	AATT	3 cut(s)	343, 499, 623
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	519
MroI	TCCGGA	1 cut(s)	304
MseI	TTAA	6 cut(s)	21, 230, 368, 375, 525, 551
MslI	CAYNNNNRTG	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	2 cut(s)	62, 305
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	4 cut(s)	44, 107, 408, 647
NdeI	CATATG	1 cut(s)	593
NdeII	GATC	2 cut(s)	259, 588
NlaIII	CATG	3 cut(s)	20, 37, 199
NlaIV	GGNNCC	3 cut(s)	60, 100, 401
NspI	RCATGY	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	4 cut(s)	40, 130, 209, 652
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	60, 100, 401
PspPI	GGNCC	3 cut(s)	59, 71, 313
PspXI	VCTCGAGB	1 cut(s)	150
PsyI	GACNNNGTC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	6 cut(s)	21, 230, 368, 375, 525, 551
SatI	GCNGC	4 cut(s)	39, 129, 208, 651
Sau3AI	GATC	2 cut(s)	259, 588
Sau96I	GGNCC	3 cut(s)	59, 71, 313
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	2 cut(s)	396, 455
SfcI	CTRYAG	1 cut(s)	456
Sfr274I	CTCGAG	1 cut(s)	150
SinI	GGWCC	2 cut(s)	59, 313
SlaI	CTCGAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	150, 189
SmoI	CTYRAG	2 cut(s)	150, 189
Sse9I	AATT	3 cut(s)	343, 499, 623
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	2 cut(s)	208, 280
SspMI	CTAG	4 cut(s)	87, 138, 422, 642
SstI	GAGCTC	1 cut(s)	396
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	664
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	117, 151
TasI	AATT	3 cut(s)	343, 499, 623
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	6 cut(s)	21, 230, 368, 375, 525, 551
Tru9I	TTAA	6 cut(s)	21, 230, 368, 375, 525, 551
TseI	GCWGC	3 cut(s)	38, 128, 650
TspGWI	ACGGA	1 cut(s)	123
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	59, 313
XapI	RAATTY	1 cut(s)	499
XceI	RCATGY	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	150
XspI	CTAG	4 cut(s)	87, 138, 422, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.