Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002407.1

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Reverse (-)

82294 .. 82908

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002407.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgcctgacgtacttgtaacaatttgttgccacaaaggagtctcttcttcagatcaagtccagatcactggtgatactagctgccttctctaccctgccaagtttgaggatagaacgcacatcttttgtaagtgtcctacaactcacaatattctctctgcaccaccttttaatctccaacagcatattgcaccaaatatggacttcaaatattggatgctcgacatggaaacaacgctgcaacatgatgtgtttgacaagctgctcatgagtctttgggcaatatggaaaaatcagaacagcatgttctggcaaggtatttctcaatcacataatgagatattgtttgctgcattttcatggcttgaagagttcataaaagcaagacaatccaaccaaccggccaaaataacaaatcggaaaaacaattggcaaccggatattcaaggtaactggaagctcaatgtggacggtagttttgttctaaatcaaaccaaaggaggacttggtggaatcctgcgcgatacgcaaggaaattttaaagctacatttatgttaccaattcaacatgtggagagtgctaaacaagttgagttgctggcaattaacgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

204

Amino Acids

23.36

Weight (kDa)

6.37

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	522
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	12
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	4 cut(s)	208, 368, 446, 566
AluBI	AGCT	4 cut(s)	81, 262, 460, 545
AluI	AGCT	4 cut(s)	81, 262, 460, 545
Alw26I	GTCTC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	4 cut(s)	81, 238, 262, 350
ApoI	RAATTY	1 cut(s)	535
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AspLEI	GCGC	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	83
BbvI	GCAGC	4 cut(s)	68, 225, 249, 337
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	78
BisI	GCNGC	4 cut(s)	82, 239, 263, 351
BlsI	GCNGC	4 cut(s)	83, 240, 264, 352
BmsI	GCATC	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	436
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	2 cut(s)	73, 458
BseGI	GGATG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	73, 458
BseXI	GCAGC	4 cut(s)	68, 225, 249, 337
BsgI	GTGCAG	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	522
BshFI	GGCC	1 cut(s)	404
BsiSI	CCGG	2 cut(s)	401, 437
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	404
Bsp143I	GATC	2 cut(s)	52, 63
BspANI	GGCC	1 cut(s)	404
BspFNI	CGCG	1 cut(s)	522
BspHI	TCATGA	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	73, 458
BssAI	RCCGGY	1 cut(s)	400
BssMI	GATC	2 cut(s)	52, 63
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	2 cut(s)	49, 363
BstC8I	GCNNGC	1 cut(s)	600
BstF5I	GGATG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	2 cut(s)	55, 66
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	52, 63
BstMWI	GCNNNNNNNGC	1 cut(s)	526
BstNSI	RCATGY	2 cut(s)	307, 572
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	4 cut(s)	68, 225, 249, 337
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	600
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	522
Cfr10I	RCCGGY	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	6 cut(s)	226, 245, 268, 304, 360, 569
CviJI	RGCY	6 cut(s)	81, 262, 364, 404, 460, 545
CviKI_1	RGCY	6 cut(s)	81, 262, 364, 404, 460, 545
CviQI	GTAC	1 cut(s)	11
DpnI	GATC	2 cut(s)	54, 65
DpnII	GATC	2 cut(s)	52, 63
DraI	TTTAAA	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	49, 363
EarI	CTCTTC	2 cut(s)	49, 363
Eco57I	CTGAAG	1 cut(s)	33
FaeI	CATG	6 cut(s)	229, 248, 271, 307, 363, 572
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	6 cut(s)	225, 244, 267, 303, 359, 568
Fnu4HI	GCNGC	4 cut(s)	82, 239, 263, 351
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	4 cut(s)	82, 239, 263, 351
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	4 cut(s)	82, 239, 263, 351
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	2 cut(s)	401, 437
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	6 cut(s)	229, 248, 271, 307, 363, 572
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HinfI	GANTC	3 cut(s)	39, 271, 513
HpaII	CCGG	2 cut(s)	401, 437
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	3 cut(s)	52, 297, 420
Hpy188III	TCNNGA	2 cut(s)	61, 268
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	161, 191, 241, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	526
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	6 cut(s)	229, 248, 271, 307, 363, 572
HspAI	GCGC	1 cut(s)	520
Kzo9I	GATC	2 cut(s)	52, 63
Lsp1109I	GCAGC	4 cut(s)	68, 225, 249, 337
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	16, 449, 555
MalI	GATC	2 cut(s)	54, 65
MboI	GATC	2 cut(s)	52, 63
MboII	GAAGA	3 cut(s)	36, 39, 380
MfeI	CAATTG	1 cut(s)	427
MluCI	AATT	5 cut(s)	21, 427, 535, 561, 603
MlyI	GAGTC	2 cut(s)	48, 280
MmeI	TCCRAC	2 cut(s)	202, 417
MnlI	CCTC	2 cut(s)	100, 494
MseI	TTAA	3 cut(s)	171, 540, 606
MslI	CAYNNNNRTG	1 cut(s)	358
MspI	CCGG	2 cut(s)	401, 437
MunI	CAATTG	1 cut(s)	427
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	1 cut(s)	526
NdeII	GATC	2 cut(s)	52, 63
NlaIII	CATG	6 cut(s)	229, 248, 271, 307, 363, 572
NspI	RCATGY	2 cut(s)	307, 572
PagI	TCATGA	1 cut(s)	267
PciI	ACATGT	1 cut(s)	568
PfeI	GAWTC	1 cut(s)	513
PkrI	GCNGC	4 cut(s)	83, 240, 264, 352
PleI	GAGTC	2 cut(s)	47, 279
PpsI	GAGTC	2 cut(s)	47, 279
PscI	ACATGT	1 cut(s)	568
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	358
SaqAI	TTAA	3 cut(s)	171, 540, 606
SatI	GCNGC	4 cut(s)	82, 239, 263, 351
Sau3AI	GATC	2 cut(s)	52, 63
SchI	GAGTC	2 cut(s)	48, 280
SetI	ASST	8 cut(s)	12, 83, 169, 264, 319, 451, 462, 547
SfaNI	GCATC	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	358
Sse9I	AATT	5 cut(s)	21, 427, 535, 561, 603
SspI	AATATT	2 cut(s)	151, 212
SspMI	CTAG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	222
TasI	AATT	5 cut(s)	21, 427, 535, 561, 603
TfiI	GAWTC	1 cut(s)	513
Tru1I	TTAA	3 cut(s)	171, 540, 606
Tru9I	TTAA	3 cut(s)	171, 540, 606
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	4 cut(s)	81, 238, 262, 350
TspDTI	ATGAA	2 cut(s)	348, 364
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	535
XceI	RCATGY	2 cut(s)	307, 572
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.