Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Frigida | PF07899 | 1049 - 1189 | 1.6e-31 | Frigida-like protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3044 |
| AccBSI | CCGCTC | 1 cut(s) | 994 |
| AccIII | TCCGGA | 1 cut(s) | 156 |
| AciI | CCGC | 5 cut(s) | 52, 83, 169, 994, 3587 |
| AclWI | GGATC | 1 cut(s) | 2650 |
| AcsI | RAATTY | 3 cut(s) | 1615, 3103, 3362 |
| AfaI | GTAC | 1 cut(s) | 3067 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2866 |
| AflIII | ACRYGT | 1 cut(s) | 271 |
| AjnI | CCWGG | 2 cut(s) | 78, 123 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2853, 2873, 2885, 2905, 3554, 3586 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3616, 3648 |
| Alw21I | GWGCWC | 2 cut(s) | 123, 177 |
| AlwI | GGATC | 1 cut(s) | 2650 |
| Ama87I | CYCGRG | 1 cut(s) | 3497 |
| Aor13HI | TCCGGA | 1 cut(s) | 156 |
| AoxI | GGCC | 5 cut(s) | 42, 84, 126, 216, 3493 |
| ApoI | RAATTY | 3 cut(s) | 1615, 3103, 3362 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 36 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2696, 3184 |
| AspLEI | GCGC | 8 cut(s) | 888, 1089, 1290, 1491, 1692, 1893, 2295, 2496 |
| AspS9I | GGNCC | 4 cut(s) | 43, 127, 159, 181 |
| AsuC2I | CCSGG | 3 cut(s) | 130, 163, 185 |
| AsuHPI | GGTGA | 1 cut(s) | 334 |
| AsuII | TTCGAA | 1 cut(s) | 23 |
| AvaI | CYCGRG | 1 cut(s) | 3497 |
| AvaII | GGWCC | 2 cut(s) | 159, 181 |
| BanII | GRGCYC | 2 cut(s) | 123, 177 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 861, 893 |
| Bbv12I | GWGCWC | 2 cut(s) | 123, 177 |
| BceAI | ACGGC | 1 cut(s) | 3508 |
| BciT130I | CCWGG | 2 cut(s) | 80, 125 |
| BclI | TGATCA | 1 cut(s) | 3049 |
| BcnI | CCSGG | 3 cut(s) | 130, 163, 185 |
| BfaI | CTAG | 1 cut(s) | 524 |
| Bme1390I | CCNGG | 5 cut(s) | 80, 125, 130, 163, 185 |
| Bme18I | GGWCC | 2 cut(s) | 159, 181 |
| BmeT110I | CYCGRG | 1 cut(s) | 3497 |
| BmgT120I | GGNCC | 4 cut(s) | 43, 127, 159, 181 |
| BmiI | GGNNCC | 2 cut(s) | 161, 167 |
| BmrFI | CCNGG | 5 cut(s) | 80, 125, 130, 163, 185 |
| BmrI | ACTGGG | 1 cut(s) | 3585 |
| BmuI | ACTGGG | 1 cut(s) | 3585 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3222 |
| BpmI | CTGGAG | 2 cut(s) | 107, 2897 |
| Bpu10I | CCTNAGC | 3 cut(s) | 954, 1758, 2361 |
| Bpu14I | TTCGAA | 1 cut(s) | 23 |
| BpuMI | CCSGG | 3 cut(s) | 130, 163, 185 |
| BsaJI | CCNNGG | 8 cut(s) | 78, 1056, 1257, 1458, 1860, 2463, 2826, 3490 |
| BsaWI | WCCGGW | 1 cut(s) | 156 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 370, 400 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2866 |
| Bse1I | ACTGG | 2 cut(s) | 2998, 3591 |
| BseAI | TCCGGA | 1 cut(s) | 156 |
| BseBI | CCWGG | 2 cut(s) | 80, 125 |
| BseDI | CCNNGG | 8 cut(s) | 78, 1056, 1257, 1458, 1860, 2463, 2826, 3490 |
| BseGI | GGATG | 9 cut(s) | 865, 1066, 1267, 1468, 1669, 1870, 2071, 2473, 3379 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2866 |
| BseNI | ACTGG | 2 cut(s) | 2998, 3591 |
| BseRI | GAGGAG | 8 cut(s) | 130, 391, 500, 602, 632, 962, 1967, 2168 |
| BseYI | CCCAGC | 2 cut(s) | 3056, 3343 |
| BsgI | GTGCAG | 1 cut(s) | 3298 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3448 |
| BshFI | GGCC | 5 cut(s) | 44, 86, 128, 218, 3495 |
| BsiEI | CGRYCG | 1 cut(s) | 3448 |
| BsiHKAI | GWGCWC | 2 cut(s) | 123, 177 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3497 |
| BsiSI | CCGG | 4 cut(s) | 130, 157, 163, 184 |
| BslFI | GGGAC | 1 cut(s) | 3487 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2866 |
| BsmFI | GGGAC | 1 cut(s) | 3487 |
| BsnI | GGCC | 5 cut(s) | 44, 86, 128, 218, 3495 |
| BsoBI | CYCGRG | 1 cut(s) | 3497 |
| Bsp119I | TTCGAA | 1 cut(s) | 23 |
| Bsp1286I | GDGCHC | 2 cut(s) | 123, 177 |
| Bsp13I | TCCGGA | 1 cut(s) | 156 |
| Bsp143I | GATC | 4 cut(s) | 388, 2655, 3049, 3457 |
| BspACI | CCGC | 5 cut(s) | 52, 83, 169, 994, 3587 |
| BspANI | GGCC | 5 cut(s) | 44, 86, 128, 218, 3495 |
| BspEI | TCCGGA | 1 cut(s) | 156 |
| BspLI | GGNNCC | 2 cut(s) | 161, 167 |
| BspPI | GGATC | 1 cut(s) | 2650 |
| BspQI | GCTCTTC | 5 cut(s) | 801, 1341, 2007, 2547, 2730 |
| BspT104I | TTCGAA | 1 cut(s) | 23 |
| BsrBI | CCGCTC | 1 cut(s) | 994 |
| BsrI | ACTGG | 2 cut(s) | 2998, 3591 |
| BssECI | CCNNGG | 8 cut(s) | 78, 1056, 1257, 1458, 1860, 2463, 2826, 3490 |
| BssMI | GATC | 4 cut(s) | 388, 2655, 3049, 3457 |
| BssT1I | CCWWGG | 6 cut(s) | 1056, 1257, 1458, 1860, 2463, 2826 |
| Bst2UI | CCWGG | 2 cut(s) | 80, 125 |
| Bst4CI | ACNGT | 2 cut(s) | 16, 3210 |
| BstBI | TTCGAA | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 4 cut(s) | 173, 1353, 2559, 3083 |
| BstDSI | CCRYGG | 1 cut(s) | 3490 |
| BstEII | GGTNACC | 1 cut(s) | 322 |
| BstF5I | GGATG | 9 cut(s) | 865, 1066, 1267, 1468, 1669, 1870, 2071, 2473, 3379 |
| BstHHI | GCGC | 8 cut(s) | 888, 1089, 1290, 1491, 1692, 1893, 2295, 2496 |
| BstKTI | GATC | 4 cut(s) | 391, 2658, 3052, 3460 |
| BstMBI | GATC | 4 cut(s) | 388, 2655, 3049, 3457 |
| BstMCI | CGRYCG | 1 cut(s) | 3448 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 499, 1348, 2554, 2884 |
| BstNI | CCWGG | 2 cut(s) | 80, 125 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3222 |
| BstPI | GGTNACC | 1 cut(s) | 322 |
| BstSCI | CCNGG | 5 cut(s) | 78, 123, 128, 161, 183 |
| BsuRI | GGCC | 5 cut(s) | 44, 86, 128, 218, 3495 |
| BtgI | CCRYGG | 1 cut(s) | 3490 |
| BtsCI | GGATG | 9 cut(s) | 865, 1066, 1267, 1468, 1669, 1870, 2071, 2473, 3379 |
| BtsI | GCAGTG | 2 cut(s) | 3015, 3397 |
| BtsIMutI | CAGTG | 4 cut(s) | 3015, 3397, 3409, 3598 |
| Cac8I | GCNNGC | 4 cut(s) | 173, 1353, 2559, 3083 |
| CfoI | GCGC | 8 cut(s) | 888, 1089, 1290, 1491, 1692, 1893, 2295, 2496 |
| Cfr13I | GGNCC | 4 cut(s) | 43, 127, 159, 181 |
| Csp6I | GTAC | 1 cut(s) | 3066 |
| CviQI | GTAC | 1 cut(s) | 3066 |
| DpnI | GATC | 4 cut(s) | 390, 2657, 3051, 3459 |
| DpnII | GATC | 4 cut(s) | 388, 2655, 3049, 3457 |
| DraI | TTTAAA | 3 cut(s) | 2572, 3108, 3168 |
| EciI | GGCGGA | 1 cut(s) | 3576 |
| Ecl136II | GAGCTC | 2 cut(s) | 121, 175 |
| Eco130I | CCWWGG | 6 cut(s) | 1056, 1257, 1458, 1860, 2463, 2826 |
| Eco24I | GRGCYC | 2 cut(s) | 123, 177 |
| Eco47I | GGWCC | 2 cut(s) | 159, 181 |
| Eco53kI | GAGCTC | 2 cut(s) | 121, 175 |
| Eco88I | CYCGRG | 1 cut(s) | 3497 |
| Eco91I | GGTNACC | 1 cut(s) | 322 |
| EcoICRI | GAGCTC | 2 cut(s) | 121, 175 |
| EcoO65I | GGTNACC | 1 cut(s) | 322 |
| EcoRII | CCWGG | 2 cut(s) | 78, 123 |
| EcoT14I | CCWWGG | 6 cut(s) | 1056, 1257, 1458, 1860, 2463, 2826 |
| EcoT22I | ATGCAT | 1 cut(s) | 3482 |
| EcoT38I | GRGCYC | 2 cut(s) | 123, 177 |
| ErhI | CCWWGG | 6 cut(s) | 1056, 1257, 1458, 1860, 2463, 2826 |
| FaqI | GGGAC | 1 cut(s) | 3487 |
| FauNDI | CATATG | 1 cut(s) | 2119 |
| FbaI | TGATCA | 1 cut(s) | 3049 |
| FokI | GGATG | 9 cut(s) | 872, 1073, 1274, 1475, 1676, 1877, 2078, 2480, 3386 |
| FriOI | GRGCYC | 2 cut(s) | 123, 177 |
| FspBI | CTAG | 1 cut(s) | 524 |
| GlaI | GCGC | 8 cut(s) | 887, 1088, 1289, 1490, 1691, 1892, 2294, 2495 |
| GsaI | CCCAGC | 2 cut(s) | 3060, 3347 |
| GsuI | CTGGAG | 2 cut(s) | 107, 2897 |
| HaeIII | GGCC | 5 cut(s) | 44, 86, 128, 218, 3495 |
| HapII | CCGG | 4 cut(s) | 130, 157, 163, 184 |
| HhaI | GCGC | 8 cut(s) | 888, 1089, 1290, 1491, 1692, 1893, 2295, 2496 |
| Hin6I | GCGC | 8 cut(s) | 886, 1087, 1288, 1489, 1690, 1891, 2293, 2494 |
| HinP1I | GCGC | 8 cut(s) | 886, 1087, 1288, 1489, 1690, 1891, 2293, 2494 |
| HindIII | AAGCTT | 2 cut(s) | 3079, 3170 |
| HpaII | CCGG | 4 cut(s) | 130, 157, 163, 184 |
| HphI | GGTGA | 1 cut(s) | 334 |
| Hpy166II | GTNNAC | 2 cut(s) | 97, 3442 |
| Hpy188I | TCNGA | 4 cut(s) | 200, 393, 3228, 3549 |
| Hpy188III | TCNNGA | 5 cut(s) | 157, 2689, 2873, 2914, 3355 |
| Hpy8I | GTNNAC | 2 cut(s) | 97, 3442 |
| HpyAV | CCTTC | 7 cut(s) | 205, 521, 742, 1747, 2350, 2983, 3328 |
| HpyCH4III | ACNGT | 2 cut(s) | 16, 3210 |
| HpyCH4IV | ACGT | 1 cut(s) | 273 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 499, 1348, 2554, 2884 |
| HpySE526I | ACGT | 1 cut(s) | 273 |
| HspAI | GCGC | 8 cut(s) | 886, 1087, 1288, 1489, 1690, 1891, 2293, 2494 |
| Kpn2I | TCCGGA | 1 cut(s) | 156 |
| Ksp22I | TGATCA | 1 cut(s) | 3049 |
| Kzo9I | GATC | 4 cut(s) | 388, 2655, 3049, 3457 |
| LguI | GCTCTTC | 5 cut(s) | 801, 1341, 2007, 2547, 2730 |
| LmnI | GCTCC | 4 cut(s) | 118, 126, 520, 2875 |
| MaeI | CTAG | 1 cut(s) | 524 |
| MaeII | ACGT | 1 cut(s) | 273 |
| MaeIII | GTNAC | 2 cut(s) | 322, 3215 |
| MalI | GATC | 4 cut(s) | 390, 2657, 3051, 3459 |
| MbiI | CCGCTC | 1 cut(s) | 994 |
| MboI | GATC | 4 cut(s) | 388, 2655, 3049, 3457 |
| MfeI | CAATTG | 1 cut(s) | 239 |
| MhlI | GDGCHC | 2 cut(s) | 123, 177 |
| MlyI | GAGTC | 5 cut(s) | 131, 210, 485, 2904, 3509 |
| MmeI | TCCRAC | 7 cut(s) | 42, 777, 978, 1581, 1983, 2184, 2598 |
| Mph1103I | ATGCAT | 1 cut(s) | 3482 |
| MroI | TCCGGA | 1 cut(s) | 156 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2696, 3184 |
| MseI | TTAA | 6 cut(s) | 264, 642, 2571, 3092, 3107, 3167 |
| MslI | CAYNNNNRTG | 2 cut(s) | 276, 3527 |
| MspA1I | CMGCKG | 5 cut(s) | 1198, 1399, 1801, 2404, 3670 |
| MspI | CCGG | 4 cut(s) | 130, 157, 163, 184 |
| MspR9I | CCNGG | 5 cut(s) | 80, 125, 130, 163, 185 |
| MssI | GTTTAAAC | 1 cut(s) | 2572 |
| MunI | CAATTG | 1 cut(s) | 239 |
| MvaI | CCWGG | 2 cut(s) | 80, 125 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 499, 1348, 2554, 2884 |
| NciI | CCSGG | 3 cut(s) | 130, 163, 185 |
| NdeI | CATATG | 1 cut(s) | 2119 |
| NdeII | GATC | 4 cut(s) | 388, 2655, 3049, 3457 |
| NlaIV | GGNNCC | 2 cut(s) | 161, 167 |
| NmuCI | GTSAC | 2 cut(s) | 322, 3215 |
| NsiI | ATGCAT | 1 cut(s) | 3482 |
| NspV | TTCGAA | 1 cut(s) | 23 |
| PaeR7I | CTCGAG | 1 cut(s) | 3497 |
| PciSI | GCTCTTC | 5 cut(s) | 801, 1341, 2007, 2547, 2730 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2696, 3184 |
| PleI | GAGTC | 5 cut(s) | 131, 209, 484, 2904, 3508 |
| PmeI | GTTTAAAC | 1 cut(s) | 2572 |
| PpsI | GAGTC | 5 cut(s) | 131, 209, 484, 2904, 3508 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3222 |
| PsiI | TTATAA | 1 cut(s) | 3044 |
| Psp124BI | GAGCTC | 2 cut(s) | 123, 177 |
| Psp6I | CCWGG | 2 cut(s) | 78, 123 |
| PspEI | GGTNACC | 1 cut(s) | 322 |
| PspFI | CCCAGC | 2 cut(s) | 3056, 3343 |
| PspGI | CCWGG | 2 cut(s) | 78, 123 |
| PspN4I | GGNNCC | 2 cut(s) | 161, 167 |
| PspPI | GGNCC | 4 cut(s) | 43, 127, 159, 181 |
| PspXI | VCTCGAGB | 1 cut(s) | 3497 |
| PvuII | CAGCTG | 5 cut(s) | 1198, 1399, 1801, 2404, 3670 |
| RsaI | GTAC | 1 cut(s) | 3067 |
| RsaNI | GTAC | 1 cut(s) | 3066 |
| RseI | CAYNNNNRTG | 2 cut(s) | 276, 3527 |
| SacI | GAGCTC | 2 cut(s) | 123, 177 |
| SapI | GCTCTTC | 5 cut(s) | 801, 1341, 2007, 2547, 2730 |
| SaqAI | TTAA | 6 cut(s) | 264, 642, 2571, 3092, 3107, 3167 |
| Sau3AI | GATC | 4 cut(s) | 388, 2655, 3049, 3457 |
| Sau96I | GGNCC | 4 cut(s) | 43, 127, 159, 181 |
| SchI | GAGTC | 5 cut(s) | 131, 210, 485, 2904, 3509 |
| ScrFI | CCNGG | 5 cut(s) | 80, 125, 130, 163, 185 |
| SduI | GDGCHC | 2 cut(s) | 123, 177 |
| Sfr274I | CTCGAG | 1 cut(s) | 3497 |
| SfuI | TTCGAA | 1 cut(s) | 23 |
| SinI | GGWCC | 2 cut(s) | 159, 181 |
| SlaI | CTCGAG | 1 cut(s) | 3497 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 276, 3527 |
| SsiI | CCGC | 5 cut(s) | 52, 83, 169, 994, 3587 |
| SspI | AATATT | 1 cut(s) | 580 |
| SspMI | CTAG | 1 cut(s) | 524 |
| SstI | GAGCTC | 2 cut(s) | 123, 177 |
| StyD4I | CCNGG | 5 cut(s) | 78, 123, 128, 161, 183 |
| StyI | CCWWGG | 6 cut(s) | 1056, 1257, 1458, 1860, 2463, 2826 |
| TaaI | ACNGT | 2 cut(s) | 16, 3210 |
| TaiI | ACGT | 1 cut(s) | 276 |
| TaqII | GACCGA | 2 cut(s) | 341, 3462 |
| TatI | WGTACW | 1 cut(s) | 3065 |
| TauI | GCSGC | 1 cut(s) | 86 |
| Tru1I | TTAA | 6 cut(s) | 264, 642, 2571, 3092, 3107, 3167 |
| Tru9I | TTAA | 6 cut(s) | 264, 642, 2571, 3092, 3107, 3167 |
| TscAI | CASTG | 4 cut(s) | 3022, 3397, 3409, 3598 |
| TseFI | GTSAC | 2 cut(s) | 322, 3215 |
| Tsp45I | GTSAC | 2 cut(s) | 322, 3215 |
| TspRI | CASTG | 4 cut(s) | 3022, 3397, 3409, 3598 |
| VpaK11BI | GGWCC | 2 cut(s) | 159, 181 |
| XapI | RAATTY | 3 cut(s) | 1615, 3103, 3362 |
| XhoI | CTCGAG | 1 cut(s) | 3497 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2696, 3184 |
| XspI | CTAG | 1 cut(s) | 524 |
| Zsp2I | ATGCAT | 1 cut(s) | 3482 |