Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000957.1

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Forward (+)

6006 .. 8300

Gene Structure 2295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000957.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgaatttggaactcactaaaccctatgctgagaaggaaattaaagaggctctattccagatgcatccttccaaaagccctggaccagatggaatgtccccatttttctttcagaagtattggagcattctatctactgatgtttgtctgggagtgaagacctttttagagataggagaattggagtatgcaacaaacttcactcatctttgcctcatcccaaagatttttgaagcaacatacgctaatcaatttcgacctattgcattgtcgagtatccaatggaaagtgggaactggagagcaggtcgatgtctggaaggataactggattcctgattgtcctagatacctcattcaaagaccacttcatactgccatcagtaaagtcgcagagctaattgatggggcaactcgaagttggaatcaggatgctgtgcgtgctactttcctacctggggttatgggtgagtttctcacttctacttcatctggaaatccctatgaggctctttggaagaagataaggaacacaaggatccctggaaaggtgaaaatctgtttatggagggctgccaacaatatcttgcctactcgtgaaagtttaagctacaagggatatactgggcccttcaattgcttactttgtaatgaggccttggagacaagtactcatgtgttctgccactgccaggttgcacgagaggccattgcagcagcaaatattccaactggtagctgtcttccaggtagtttcaaagaatggctttggcaccagagccatcatcttaataatgagcaatgggagaagctacttatgctcctttgggctctctggaagaatagaaacattaagttgtggcacaatacgtgcatcaatggtcatgcaattgtcgttacaacgttctcttggtatgaacagtatctacaagcgcagaagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

314

Amino Acids

36.01

Weight (kDa)

8.46

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	771
AclI	AACGTT	1 cut(s)	902
AclWI	GGATC	2 cut(s)	532, 545
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	3 cut(s)	457, 547, 691
AgsI	TTSAA	4 cut(s)	233, 359, 634, 757
AjnI	CCWGG	5 cut(s)	79, 454, 541, 690, 745
AluBI	AGCT	4 cut(s)	397, 609, 738, 811
AluI	AGCT	4 cut(s)	397, 609, 738, 811
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	2 cut(s)	532, 545
AoxI	GGCC	3 cut(s)	626, 654, 705
ApaI	GGGCCC	1 cut(s)	630
ApeKI	GCWGC	3 cut(s)	572, 713, 716
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	3 cut(s)	83, 626, 627
AsuHPI	GGTGA	2 cut(s)	479, 562
AvaII	GGWCC	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	630
BamHI	GGATCC	1 cut(s)	537
BanI	GGYRCC	1 cut(s)	771
BanII	GRGCYC	2 cut(s)	630, 832
BauI	CACGAG	2 cut(s)	594, 699
BbsI	GAAGAC	2 cut(s)	164, 734
BbvI	GCAGC	3 cut(s)	559, 725, 728
BccI	CCATC	4 cut(s)	83, 386, 398, 789
BciT130I	CCWGG	5 cut(s)	81, 456, 543, 692, 747
BciVI	GTATCC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	287
BisI	GCNGC	3 cut(s)	573, 714, 717
BlsI	GCNGC	3 cut(s)	574, 715, 718
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	5 cut(s)	81, 456, 543, 692, 747
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	3 cut(s)	83, 626, 627
BmiI	GGNNCC	3 cut(s)	539, 628, 773
BmrFI	CCNGG	5 cut(s)	81, 456, 543, 692, 747
BmrI	ACTGGG	1 cut(s)	633
BmsI	GCATC	4 cut(s)	51, 73, 421, 882
BmuI	ACTGGG	1 cut(s)	633
BpiI	GAAGAC	2 cut(s)	164, 734
BpmI	CTGGAG	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	870
BsaJI	CCNNGG	4 cut(s)	79, 455, 541, 657
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 804, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	457, 547, 691
Bse1I	ACTGG	4 cut(s)	301, 332, 628, 736
Bse3DI	GCAATG	2 cut(s)	708, 806
BseBI	CCWGG	5 cut(s)	81, 456, 543, 692, 747
BseDI	CCNNGG	4 cut(s)	79, 455, 541, 657
BseGI	GGATG	3 cut(s)	64, 216, 436
BseLI	CCNNNNNNNGG	3 cut(s)	457, 547, 691
BseMI	GCAATG	2 cut(s)	708, 806
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	4 cut(s)	301, 332, 628, 736
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	3 cut(s)	559, 725, 728
BshFI	GGCC	3 cut(s)	628, 656, 707
BshNI	GGYRCC	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	457, 547, 691
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	3 cut(s)	628, 656, 707
Bsp120I	GGGCCC	1 cut(s)	626
Bsp1286I	GDGCHC	2 cut(s)	630, 832
Bsp143I	GATC	1 cut(s)	537
BspANI	GGCC	3 cut(s)	628, 656, 707
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	539, 628, 773
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	532, 545
BspT107I	GGYRCC	1 cut(s)	771
BsrDI	GCAATG	2 cut(s)	708, 806
BsrI	ACTGG	4 cut(s)	301, 332, 628, 736
BssECI	CCNNGG	4 cut(s)	79, 455, 541, 657
BssMI	GATC	1 cut(s)	537
BssSI	CACGAG	2 cut(s)	594, 699
BssT1I	CCWWGG	1 cut(s)	657
Bst2BI	CACGAG	2 cut(s)	594, 699
Bst2UI	CCWGG	5 cut(s)	81, 456, 543, 692, 747
Bst4CI	ACNGT	1 cut(s)	921
BstBAI	YACGTR	1 cut(s)	870
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	3 cut(s)	64, 216, 436
BstHHI	GCGC	1 cut(s)	934
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 440, 704, 713, 817
BstNI	CCWGG	5 cut(s)	81, 456, 543, 692, 747
BstSCI	CCNGG	5 cut(s)	79, 454, 541, 690, 745
BstSLI	GKGCMC	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	559, 725, 728
BstV2I	GAAGAC	2 cut(s)	164, 734
BstX2I	RGATCY	1 cut(s)	537
BstYI	RGATCY	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	3 cut(s)	628, 656, 707
BtsCI	GGATG	3 cut(s)	64, 216, 436
BtsI	GCAGTG	1 cut(s)	685
BtsIMutI	CAGTG	1 cut(s)	685
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	441
CfoI	GCGC	1 cut(s)	934
Cfr13I	GGNCC	3 cut(s)	83, 626, 627
Csp6I	GTAC	1 cut(s)	669
CviAII	CATG	2 cut(s)	674, 884
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	657
Eco147I	AGGCCT	1 cut(s)	656
Eco24I	GRGCYC	2 cut(s)	630, 832
Eco47I	GGWCC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	627
EcoRII	CCWGG	5 cut(s)	79, 454, 541, 690, 745
EcoT14I	CCWWGG	1 cut(s)	657
EcoT22I	ATGCAT	1 cut(s)	66
EcoT38I	GRGCYC	2 cut(s)	630, 832
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	2 cut(s)	677, 887
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	2 cut(s)	673, 883
Fnu4HI	GCNGC	3 cut(s)	573, 714, 717
FokI	GGATG	3 cut(s)	51, 203, 443
FriOI	GRGCYC	2 cut(s)	630, 832
Fsp4HI	GCNGC	3 cut(s)	573, 714, 717
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	3 cut(s)	573, 714, 717
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	628, 656, 707
HhaI	GCGC	1 cut(s)	934
Hin1II	CATG	2 cut(s)	677, 887
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HinfI	GANTC	2 cut(s)	331, 424
HphI	GGTGA	2 cut(s)	479, 562
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	7 cut(s)	58, 316, 335, 428, 492, 596, 835
HpyAV	CCTTC	4 cut(s)	28, 78, 313, 640
HpyCH4III	ACNGT	1 cut(s)	921
HpyCH4IV	ACGT	2 cut(s)	869, 902
HpyCH4V	TGCA	7 cut(s)	64, 191, 266, 698, 713, 873, 887
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 440, 704, 713, 817
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	869, 902
Hsp92II	CATG	2 cut(s)	677, 887
HspAI	GCGC	1 cut(s)	932
Kzo9I	GATC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	123, 825
Lsp1109I	GCAGC	3 cut(s)	559, 725, 728
LweI	GCATC	4 cut(s)	51, 73, 421, 882
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	869, 902
MaeIII	GTNAC	1 cut(s)	895
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MboII	GAAGA	5 cut(s)	169, 529, 532, 734, 850
MfeI	CAATTG	2 cut(s)	634, 888
MflI	RGATCY	1 cut(s)	537
MhlI	GDGCHC	2 cut(s)	630, 832
MluCI	AATT	7 cut(s)	4, 39, 179, 251, 399, 634, 888
MmeI	TCCRAC	2 cut(s)	401, 752
MnlI	CCTC	7 cut(s)	40, 224, 362, 499, 561, 646, 697
Mph1103I	ATGCAT	1 cut(s)	66
MseI	TTAA	4 cut(s)	42, 605, 789, 852
MspR9I	CCNGG	5 cut(s)	81, 456, 543, 692, 747
MunI	CAATTG	2 cut(s)	634, 888
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	5 cut(s)	81, 456, 543, 692, 747
MwoI	GCNNNNNNNGC	5 cut(s)	242, 440, 704, 713, 817
NdeII	GATC	1 cut(s)	537
NlaIII	CATG	2 cut(s)	677, 887
NlaIV	GGNNCC	3 cut(s)	539, 628, 773
NsiI	ATGCAT	1 cut(s)	66
PceI	AGGCCT	1 cut(s)	656
PctI	GAATGC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	331, 424
PkrI	GCNGC	3 cut(s)	574, 715, 718
Ppu21I	YACGTR	1 cut(s)	870
Psp1406I	AACGTT	1 cut(s)	902
Psp6I	CCWGG	5 cut(s)	79, 454, 541, 690, 745
PspGI	CCWGG	5 cut(s)	79, 454, 541, 690, 745
PspN4I	GGNNCC	3 cut(s)	539, 628, 773
PspOMI	GGGCCC	1 cut(s)	626
PspPI	GGNCC	3 cut(s)	83, 626, 627
PsrI	GAACNNNNNNTAC	2 cut(s)	909, 941
PsuI	RGATCY	1 cut(s)	537
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
SaqAI	TTAA	4 cut(s)	42, 605, 789, 852
SatI	GCNGC	3 cut(s)	573, 714, 717
Sau3AI	GATC	1 cut(s)	537
Sau96I	GGNCC	3 cut(s)	83, 626, 627
ScaI	AGTACT	1 cut(s)	670
ScrFI	CCNGG	5 cut(s)	81, 456, 543, 692, 747
SduI	GDGCHC	2 cut(s)	630, 832
SfaNI	GCATC	4 cut(s)	51, 73, 421, 882
SinI	GGWCC	1 cut(s)	83
Sse9I	AATT	7 cut(s)	4, 39, 179, 251, 399, 634, 888
SseBI	AGGCCT	1 cut(s)	656
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	656
StyD4I	CCNGG	5 cut(s)	79, 454, 541, 690, 745
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	1 cut(s)	921
TaiI	ACGT	2 cut(s)	872, 905
TaqI	TCGA	4 cut(s)	256, 272, 309, 415
TasI	AATT	7 cut(s)	4, 39, 179, 251, 399, 634, 888
TatI	WGTACW	1 cut(s)	668
TfiI	GAWTC	2 cut(s)	331, 424
Tru1I	TTAA	4 cut(s)	42, 605, 789, 852
Tru9I	TTAA	4 cut(s)	42, 605, 789, 852
TscAI	CASTG	1 cut(s)	692
TseI	GCWGC	3 cut(s)	572, 713, 716
TspDTI	ATGAA	4 cut(s)	17, 359, 477, 930
TspRI	CASTG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	670
Zsp2I	ATGCAT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.