RchiOBHm_Chr3g0477221

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002539
Physical Location & Seq
Reverse (-)
23049497 .. 23050132
636 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44254

Sequence Viewer

Length: 297 bp
ATGTTAGAAAGAGCTTTACAATTGCACGCTGAGGTGTTTGAGAGGCTTCTGATGGGTATTTGGTCGATCTGGAAGAACAGAAATAGTATGTTATGGGACAATACCTCAAGACCAGCTGCTGATCTTTTCCTAAGTGCCATGACTTGGCTAGATGAGTTTAATAAAGCTCAAGCATCTTCTGAGATTAACCGGTCACAGGGGATAGAACGATGGCAACCTGCACATGGTTCTTTAGTTAAGATAAATGTGGATGGTGCTTTCTGCCATCACTTAATCATGGAGGCCTTGGGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

98

Amino Acids

11.22

Weight (kDa)

6.03

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 226
AccB7I CCANNNNNTGG 1 cut(s) 144
AfiI CCNNNNNNNGG 3 cut(s) 144, 196, 224
AgeI ACCGGT 1 cut(s) 189
AluBI AGCT 3 cut(s) 14, 116, 167
AluI AGCT 3 cut(s) 14, 116, 167
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 116
AsiGI ACCGGT 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 103
BccI CCATC 4 cut(s) 46, 204, 245, 273
BfaI CTAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmsI GCATC 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 91, 153
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 196, 224
Bse118I RCCGGY 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 144, 196, 224
BseMII CTCAG 2 cut(s) 21, 171
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 284
BshTI ACCGGT 1 cut(s) 189
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 3 cut(s) 144, 196, 224
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 66, 121
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 2 cut(s) 22, 172
BspMI ACCTGC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 2 cut(s) 66, 121
BssT1I CCWWGG 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 3 cut(s) 30, 131, 180
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 2 cut(s) 69, 124
BstMBI GATC 2 cut(s) 66, 121
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 27
CaiI CAGNNNCTG 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 189
CviAII CATG 3 cut(s) 139, 224, 277
CviJI RGCY 6 cut(s) 14, 46, 116, 148, 167, 284
CviKI_1 RGCY 6 cut(s) 14, 46, 116, 148, 167, 284
DdeI CTNAG 3 cut(s) 30, 131, 180
DpnI GATC 2 cut(s) 68, 123
DpnII GATC 2 cut(s) 66, 121
Eco130I CCWWGG 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 3 cut(s) 142, 227, 280
FaiI YATR 6 cut(s) 89, 94, 140, 225, 278, 295
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 138, 223, 276
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 149
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 284
HapII CCGG 1 cut(s) 190
Hin1II CATG 3 cut(s) 142, 227, 280
HpaII CCGG 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 51, 181
Hpy188III TCNNGA 2 cut(s) 70, 108
HpyCH4V TGCA 2 cut(s) 25, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 3 cut(s) 30, 131, 180
Hsp92II CATG 3 cut(s) 142, 227, 280
Kzo9I GATC 2 cut(s) 66, 121
LpnPI CCDG 5 cut(s) 55, 126, 182, 203, 231
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 182
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 192
MalI GATC 2 cut(s) 68, 123
MboI GATC 2 cut(s) 66, 121
MboII GAAGA 2 cut(s) 85, 168
MfeI CAATTG 1 cut(s) 20
MluCI AATT 1 cut(s) 20
MnlI CCTC 4 cut(s) 25, 36, 115, 274
MseI TTAA 4 cut(s) 159, 186, 237, 272
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 1 cut(s) 190
MunI CAATTG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 2 cut(s) 66, 121
NlaIII CATG 3 cut(s) 142, 227, 280
NmuCI GTSAC 1 cut(s) 192
PceI AGGCCT 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 144
PinAI ACCGGT 1 cut(s) 189
PkrI GCNGC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 116
SaqAI TTAA 4 cut(s) 159, 186, 237, 272
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 66, 121
SetI ASST 6 cut(s) 16, 36, 107, 118, 169, 220
SfaNI GCATC 1 cut(s) 182
SmlI CTYRAG 2 cut(s) 106, 168
SmoI CTYRAG 2 cut(s) 106, 168
Sse9I AATT 1 cut(s) 20
SseBI AGGCCT 1 cut(s) 284
SspMI CTAG 1 cut(s) 149
StuI AGGCCT 1 cut(s) 284
StyI CCWWGG 1 cut(s) 285
TaqI TCGA 1 cut(s) 65
TasI AATT 1 cut(s) 20
Tru1I TTAA 4 cut(s) 159, 186, 237, 272
Tru9I TTAA 4 cut(s) 159, 186, 237, 272
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 192
Van91I CCANNNNNTGG 1 cut(s) 144
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.