Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006591.1

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Forward (+)

13868 .. 15359

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006591.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgttagctaagcagggatggagactggtgtccaaacccaactctttggtggctagaatatttaaagctcgatattttcccaattgctctttctgggaagcacaattaggcgacggaccatccttctcgtggagaagtattttggaaggtagaccggtgttgaaagcgggggtcaaatggagagtgggagatggtgaacaaattcatatttgggaggacaaatggattcctaattacttaaggtctcagattcacagaccggaaaactcaacttcattcgataggactgcgtactggattgccagagaacaagttcttcgtaatgctcttgcttctacttcacagggggatcattttaaggaactatggaagtgcctttggaaagctagagtgcctgccaaggtccaaatatgtgcatggagggcctgccaaaacatcctacccactagagagtgcaccaagggatatgatggtgaaacgaattgcctactgtgctctgctacccttgaggatacaacacacatcttctgtaagtgtccgattgcaaaagaaatcttctcagctcccccatttaatttacaatctatggctatgccaaatttggtttttaaggaatggatgctagaaactgctcttgtcattaagccagagacatttgaaaagttattaatgcttatatggtctctctggaaaaatcggaacactactctgtgggaggatagttccagaccgccttcgacggcaatacaactacagttgtcctctgtcagtatcgaaacagattggcttgctgctgttaaagaaattatgcaccaacaatctgattattcagagtttgcagccattattgctgacattcaggaactccagaaggggttaaatgaagcaccgattggttttgcacctaggaattgcaacaaagttgcgcacatactagctagtattggttttgaatctggtcaaaaggagtcgtggctccaaaatgctctcaattgtattctagatgtacttcaatatgattataaccatctgagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

345

Amino Acids

39.58

Weight (kDa)

7.96

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1023
Acc16I	TGCGCA	1 cut(s)	927
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	2 cut(s)	167, 731
AclWI	GGATC	1 cut(s)	357
AcsI	RAATTY	2 cut(s)	201, 598
AfaI	GTAC	2 cut(s)	293, 1008
AfiI	CCNNNNNNNGG	1 cut(s)	129
AflII	CTTAAG	1 cut(s)	238
AgeI	ACCGGT	1 cut(s)	154
AgsI	TTSAA	4 cut(s)	163, 659, 953, 1013
AjuI	GAANNNNNNNTTGG	4 cut(s)	74, 106, 876, 908
AluBI	AGCT	6 cut(s)	8, 68, 386, 563, 938, 1035
AluI	AGCT	6 cut(s)	8, 68, 386, 563, 938, 1035
Alw21I	GWGCWC	2 cut(s)	458, 497
Alw26I	GTCTC	4 cut(s)	16, 249, 644, 687
Alw44I	GTGCAC	1 cut(s)	454
AlwI	GGATC	1 cut(s)	357
AoxI	GGCC	1 cut(s)	423
ApaLI	GTGCAC	1 cut(s)	454
ApeKI	GCWGC	2 cut(s)	791, 839
ApoI	RAATTY	2 cut(s)	201, 598
AseI	ATTAAT	1 cut(s)	668
AsiGI	ACCGGT	1 cut(s)	154
Asp700I	GAANNNNTTC	2 cut(s)	201, 312
AspA2I	CCTAGG	1 cut(s)	905
AspLEI	GCGC	1 cut(s)	928
AspS9I	GGNCC	3 cut(s)	116, 403, 423
AsuHPI	GGTGA	2 cut(s)	206, 485
AvaII	GGWCC	2 cut(s)	116, 403
AvrII	CCTAGG	1 cut(s)	905
BaeGI	GKGCMC	1 cut(s)	458
BauI	CACGAG	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	458, 497
BbvI	GCAGC	2 cut(s)	778, 851
BccI	CCATC	5 cut(s)	12, 127, 185, 464, 1035
BceAI	ACGGC	1 cut(s)	756
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciVI	GTATCC	1 cut(s)	505
BcoDI	GTCTC	4 cut(s)	16, 249, 644, 687
BfaI	CTAG	9 cut(s)	54, 387, 447, 623, 906, 935, 939, 1001, 1036
BfmI	CTRYAG	1 cut(s)	752
BfrI	CTTAAG	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	2 cut(s)	792, 840
BlnI	CCTAGG	1 cut(s)	905
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	2 cut(s)	793, 841
Bme18I	GGWCC	2 cut(s)	116, 403
BmgT120I	GGNCC	3 cut(s)	116, 403, 423
BmiI	GGNNCC	1 cut(s)	977
BmsI	GCATC	1 cut(s)	609
BoxI	GACNNNNGTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	851
Bpu1102I	GCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	527
BsaI	GGTCTC	2 cut(s)	249, 687
BsaJI	CCNNGG	3 cut(s)	399, 459, 905
BsaWI	WCCGGW	2 cut(s)	154, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	30, 299
BseDI	CCNNGG	3 cut(s)	399, 459, 905
BseGI	GGATG	4 cut(s)	23, 119, 435, 624
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	3 cut(s)	260, 573, 1022
BseNI	ACTGG	2 cut(s)	30, 299
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	778, 851
BshFI	GGCC	1 cut(s)	425
BshTI	ACCGGT	1 cut(s)	154
BsiHKAI	GWGCWC	2 cut(s)	458, 497
BsiSI	CCGG	2 cut(s)	155, 260
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	4 cut(s)	16, 249, 644, 687
BsnI	GGCC	1 cut(s)	425
Bso31I	GGTCTC	2 cut(s)	249, 687
Bsp1286I	GDGCHC	2 cut(s)	458, 497
Bsp143I	GATC	1 cut(s)	349
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	167, 731
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	3 cut(s)	259, 572, 1023
BspLI	GGNNCC	1 cut(s)	977
BspPI	GGATC	1 cut(s)	357
BspTI	CTTAAG	1 cut(s)	238
BspTNI	GGTCTC	2 cut(s)	249, 687
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	30, 299
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	399, 459, 905
BssMI	GATC	1 cut(s)	349
BssSI	CACGAG	1 cut(s)	127
BssT1I	CCWWGG	3 cut(s)	399, 459, 905
Bst2BI	CACGAG	1 cut(s)	127
Bst4CI	ACNGT	2 cut(s)	492, 756
BstAFI	CTTAAG	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	396, 427, 789
BstDEI	CTNAG	4 cut(s)	9, 246, 559, 1031
BstF5I	GGATG	4 cut(s)	23, 119, 435, 624
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	4 cut(s)	16, 249, 644, 687
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 492, 848
BstPAI	GACNNNNGTC	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	752
BstSLI	GKGCMC	1 cut(s)	458
BstV1I	GCAGC	2 cut(s)	778, 851
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	4 cut(s)	23, 119, 435, 624
Cac8I	GCNNGC	3 cut(s)	396, 427, 789
CfoI	GCGC	1 cut(s)	928
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	116, 403, 423
Csp6I	GTAC	2 cut(s)	292, 1007
CspAI	ACCGGT	1 cut(s)	154
CviAII	CATG	1 cut(s)	417
CviQI	GTAC	2 cut(s)	292, 1007
DdeI	CTNAG	4 cut(s)	9, 246, 559, 1031
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
DraI	TTTAAA	1 cut(s)	64
Eco130I	CCWWGG	3 cut(s)	399, 459, 905
Eco31I	GGTCTC	2 cut(s)	249, 687
Eco47I	GGWCC	2 cut(s)	116, 403
EcoO109I	RGGNCCY	1 cut(s)	423
EcoT14I	CCWWGG	3 cut(s)	399, 459, 905
ErhI	CCWWGG	3 cut(s)	399, 459, 905
FaeI	CATG	1 cut(s)	420
FatI	CATG	1 cut(s)	416
FauI	CCCGC	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	792, 840
FokI	GGATG	4 cut(s)	30, 106, 422, 631
Fsp4HI	GCNGC	2 cut(s)	792, 840
FspBI	CTAG	9 cut(s)	54, 387, 447, 623, 906, 935, 939, 1001, 1036
FspI	TGCGCA	1 cut(s)	927
GlaI	GCGC	1 cut(s)	927
GluI	GCNGC	2 cut(s)	792, 840
GsuI	CTGGAG	1 cut(s)	851
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	2 cut(s)	155, 260
HhaI	GCGC	1 cut(s)	928
Hin1II	CATG	1 cut(s)	420
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HinfI	GANTC	4 cut(s)	226, 250, 953, 968
HpaII	CCGG	2 cut(s)	155, 260
HphI	GGTGA	2 cut(s)	206, 485
Hpy166II	GTNNAC	3 cut(s)	152, 197, 456
Hpy188I	TCNGA	6 cut(s)	249, 540, 699, 823, 832, 1032
Hpy188III	TCNNGA	5 cut(s)	688, 726, 860, 868, 1001
Hpy8I	GTNNAC	3 cut(s)	152, 197, 456
Hpy99I	CGWCG	2 cut(s)	116, 742
HpyAV	CCTTC	4 cut(s)	133, 140, 744, 865
HpyCH4III	ACNGT	2 cut(s)	492, 756
HpyCH4V	TGCA	7 cut(s)	416, 456, 545, 811, 839, 902, 915
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 492, 848
HpyF3I	CTNAG	4 cut(s)	9, 246, 559, 1031
Hsp92II	CATG	1 cut(s)	420
HspAI	GCGC	1 cut(s)	926
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	568, 981
Lsp1109I	GCAGC	2 cut(s)	778, 851
LweI	GCATC	1 cut(s)	609
MaeI	CTAG	9 cut(s)	54, 387, 447, 623, 906, 935, 939, 1001, 1036
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	3 cut(s)	308, 517, 547
MfeI	CAATTG	2 cut(s)	82, 991
MhlI	GDGCHC	2 cut(s)	458, 497
MlyI	GAGTC	1 cut(s)	977
MnlI	CCTC	5 cut(s)	208, 414, 502, 709, 772
MroXI	GAANNNNTTC	2 cut(s)	201, 312
MseI	TTAA	9 cut(s)	63, 239, 357, 573, 609, 642, 668, 798, 878
MspCI	CTTAAG	1 cut(s)	238
MspI	CCGG	2 cut(s)	155, 260
MunI	CAATTG	2 cut(s)	82, 991
MwoI	GCNNNNNNNGC	3 cut(s)	422, 492, 848
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	420
NlaIV	GGNNCC	1 cut(s)	977
NsbI	TGCGCA	1 cut(s)	927
PdmI	GAANNNNTTC	2 cut(s)	201, 312
PfeI	GAWTC	3 cut(s)	226, 250, 953
PinAI	ACCGGT	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	793, 841
PleI	GAGTC	1 cut(s)	976
PpsI	GAGTC	1 cut(s)	976
PshAI	GACNNNNGTC	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	668
PsiI	TTATAA	1 cut(s)	1023
PspN4I	GGNNCC	1 cut(s)	977
PspPI	GGNCC	3 cut(s)	116, 403, 423
RsaI	GTAC	2 cut(s)	293, 1008
RsaNI	GTAC	2 cut(s)	292, 1007
SaqAI	TTAA	9 cut(s)	63, 239, 357, 573, 609, 642, 668, 798, 878
SatI	GCNGC	2 cut(s)	792, 840
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	3 cut(s)	116, 403, 423
SchI	GAGTC	1 cut(s)	977
SduI	GDGCHC	2 cut(s)	458, 497
SfaNI	GCATC	1 cut(s)	609
SfcI	CTRYAG	1 cut(s)	752
SinI	GGWCC	2 cut(s)	116, 403
SmlI	CTYRAG	2 cut(s)	238, 506
SmoI	CTYRAG	2 cut(s)	238, 506
SsiI	CCGC	2 cut(s)	167, 731
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	9 cut(s)	54, 387, 447, 623, 906, 935, 939, 1001, 1036
StyI	CCWWGG	3 cut(s)	399, 459, 905
TaaI	ACNGT	2 cut(s)	492, 756
TaqI	TCGA	4 cut(s)	70, 279, 737, 774
TatI	WGTACW	1 cut(s)	1006
TfiI	GAWTC	3 cut(s)	226, 250, 953
Tru1I	TTAA	9 cut(s)	63, 239, 357, 573, 609, 642, 668, 798, 878
Tru9I	TTAA	9 cut(s)	63, 239, 357, 573, 609, 642, 668, 798, 878
TseI	GCWGC	2 cut(s)	791, 839
TspDTI	ATGAA	3 cut(s)	194, 264, 897
TspGWI	ACGGA	1 cut(s)	129
Vha464I	CTTAAG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	454
VpaK11BI	GGWCC	2 cut(s)	116, 403
VspI	ATTAAT	1 cut(s)	668
XapI	RAATTY	2 cut(s)	201, 598
XbaI	TCTAGA	1 cut(s)	1000
XcmI	CCANNNNNNNNNTGG	2 cut(s)	46, 126
XmaJI	CCTAGG	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	151
XmnI	GAANNNNTTC	2 cut(s)	201, 312
XspI	CTAG	9 cut(s)	54, 387, 447, 623, 906, 935, 939, 1001, 1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.