pycom11g21530

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002539
Physical Location & Seq
Forward (+)
24677035 .. 24677962
928 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g21530.1

Sequence Viewer

Length: 786 bp
ATGGACTTACAAGAAGTTAGGCTACTCTTTGTATTGCCAATTGGTTATGGTGAAACCCCAACTTTTTTTATGGTATCAAAGCAGGTTATTTCACGTGTGAAGTCTAATGGCCACACATGCTCCATGTCATCCAATTTGGGTTGCCTATGCGTAGACTTGAAATTCTTTACTTGTGAGAAGATGTACAGAACTATAGATGTGAATCATGCGATTCGTAAACAACATTACATTTTCAAATTAAACAGGTATGATAAATCATTTTTTTCTTTTAACCCAGGAAGGAGGGAAAGAACAATCGAACTAGCATATCAAGTAAAAATGTTCCCAATTTTTTTTTATGTAAAATGTTCTTCTTTTTTTAAAAAAAATAAAACATGTTTAAACTCAACTTTGAGGGGCGCTTCAGTTTGGAAAGCTTTGTGGAAGGCTAATATCCTAGGCAAAATTCTTTTGTGCGTTTGGAGGGCGTGCAGAGACATTTTGCCCACTCGTGCTAATTTGGTAACCAAGGGAGTTATGGTGGATAATCTATGTTTATTTTGTAGTTCCTCTTTGGAGTCGGCGCTAGACGTTTTCACTGTTTGTCTATTTGCTCGTGCGGTGTATGATGCCTCTCATCTAAATTTCAGATTCAGTCTTCCGCCGTCTGCTTCTTTCTGTGACTGGTTATCACTTTGTGTGGATCAGGTTTCTACAAATCAGTTTGCTTTGCTGCTTATGTGTATTCTGTTGAAAATCAATGTCAAAGTTAGGCAAGGAAAGTTAGTCAATGTTAGGTATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

262

Amino Acids

29.99

Weight (kDa)

9.55

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 134 - 201 2.7e-10 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 153
AciI CCGC 2 cut(s) 599, 641
AclWI GGATC 1 cut(s) 690
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 3 cut(s) 161, 444, 622
AcuI CTGAAG 1 cut(s) 387
AcvI CACGTG 1 cut(s) 95
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 1 cut(s) 185
AflIII ACRYGT 2 cut(s) 94, 374
AgsI TTSAA 3 cut(s) 160, 235, 733
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 1 cut(s) 416
AluI AGCT 1 cut(s) 416
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 1 cut(s) 690
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 712
ApoI RAATTY 3 cut(s) 161, 444, 622
AspA2I CCTAGG 1 cut(s) 436
AspLEI GCGC 2 cut(s) 401, 565
AsuHPI GGTGA 1 cut(s) 62
AvrII CCTAGG 1 cut(s) 436
BalI TGGCCA 1 cut(s) 111
BarI GAAGNNNNNNTAC 1 cut(s) 38
BauI CACGAG 2 cut(s) 489, 594
BbrPI CACGTG 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 629
BbvI GCAGC 1 cut(s) 699
BceAI ACGGC 1 cut(s) 628
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 3 cut(s) 302, 437, 566
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 2 cut(s) 402, 566
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 1 cut(s) 713
BlnI CCTAGG 1 cut(s) 436
BlsI GCNGC 1 cut(s) 714
Bme1390I CCNGG 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 629
BsaAI YACGTR 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 274, 436, 507
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 504, 534
Bse1I ACTGG 1 cut(s) 668
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 3 cut(s) 274, 436, 507
BseGI GGATG 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 201
BseNI ACTGG 1 cut(s) 668
BseXI GCAGC 1 cut(s) 699
BsgI GTGCAG 1 cut(s) 490
BshFI GGCC 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 468
BsnI GGCC 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 682
BspACI CCGC 2 cut(s) 599, 641
BspANI GGCC 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 1 cut(s) 690
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 1 cut(s) 668
BssECI CCNNGG 3 cut(s) 274, 436, 507
BssMI GATC 1 cut(s) 682
BssSI CACGAG 2 cut(s) 489, 594
BssT1I CCWWGG 2 cut(s) 436, 507
Bst2BI CACGAG 2 cut(s) 489, 594
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 580
BstAUI TGTACA 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 469
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 1 cut(s) 128
BstH2I RGCGCY 2 cut(s) 402, 566
BstHHI GCGC 2 cut(s) 401, 565
BstKTI GATC 1 cut(s) 685
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 1 cut(s) 682
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 2 cut(s) 120, 378
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 699
BstV2I GAAGAC 1 cut(s) 629
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 576
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 469
CfoI GCGC 2 cut(s) 401, 565
Csp6I GTAC 1 cut(s) 184
CviAII CATG 4 cut(s) 117, 124, 206, 375
CviJI RGCY 4 cut(s) 22, 111, 416, 428
CviKI_1 RGCY 4 cut(s) 22, 111, 416, 428
CviQI GTAC 1 cut(s) 184
DpnI GATC 1 cut(s) 684
DpnII GATC 1 cut(s) 682
DraI TTTAAA 2 cut(s) 361, 381
DraIII CACNNNGTG 1 cut(s) 677
EaeI YGGCCR 1 cut(s) 109
EciI GGCGGA 1 cut(s) 630
Eco130I CCWWGG 2 cut(s) 436, 507
Eco57I CTGAAG 1 cut(s) 387
Eco72I CACGTG 1 cut(s) 95
Eco91I GGTNACC 1 cut(s) 502
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 436, 507
ErhI CCWWGG 2 cut(s) 436, 507
FaeI CATG 4 cut(s) 120, 127, 209, 378
FatI CATG 4 cut(s) 116, 123, 205, 374
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 713
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 713
FspBI CTAG 3 cut(s) 302, 437, 566
GlaI GCGC 2 cut(s) 400, 564
GluI GCNGC 1 cut(s) 713
HaeII RGCGCY 2 cut(s) 402, 566
HaeIII GGCC 1 cut(s) 111
HhaI GCGC 2 cut(s) 401, 565
Hin1II CATG 4 cut(s) 120, 127, 209, 378
Hin6I GCGC 2 cut(s) 399, 563
HinP1I GCGC 2 cut(s) 399, 563
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 4 cut(s) 202, 211, 557, 630
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 154, 218
Hpy188I TCNGA 1 cut(s) 629
Hpy8I GTNNAC 2 cut(s) 154, 218
HpyAV CCTTC 2 cut(s) 273, 418
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 2 cut(s) 94, 570
HpyCH4V TGCA 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpySE526I ACGT 2 cut(s) 94, 570
Hsp92II CATG 4 cut(s) 120, 127, 209, 378
HspAI GCGC 2 cut(s) 399, 563
Kzo9I GATC 1 cut(s) 682
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 6 cut(s) 68, 229, 261, 288, 649, 671
Lsp1109I GCAGC 1 cut(s) 699
LweI GCATC 1 cut(s) 598
MaeI CTAG 3 cut(s) 302, 437, 566
MaeII ACGT 2 cut(s) 94, 570
MaeIII GTNAC 2 cut(s) 502, 659
MalI GATC 1 cut(s) 684
MboI GATC 1 cut(s) 682
MboII GAAGA 3 cut(s) 190, 342, 629
MfeI CAATTG 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 8 cut(s) 39, 133, 161, 236, 327, 444, 496, 622
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 1 cut(s) 566
MnlI CCTC 5 cut(s) 276, 387, 456, 559, 622
Mox20I TGGCCA 1 cut(s) 111
MscI TGGCCA 1 cut(s) 111
MseI TTAA 4 cut(s) 239, 270, 360, 380
Msp20I TGGCCA 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 276
MssI GTTTAAAC 1 cut(s) 381
MunI CAATTG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 1 cut(s) 682
NlaIII CATG 4 cut(s) 120, 127, 209, 378
NmuCI GTSAC 1 cut(s) 659
NspI RCATGY 2 cut(s) 120, 378
PciI ACATGT 1 cut(s) 374
PfeI GAWTC 3 cut(s) 202, 211, 630
PkrI GCNGC 1 cut(s) 714
PleI GAGTC 1 cut(s) 565
PmaCI CACGTG 1 cut(s) 95
PmeI GTTTAAAC 1 cut(s) 381
PmlI CACGTG 1 cut(s) 95
PpsI GAGTC 1 cut(s) 565
Ppu21I YACGTR 1 cut(s) 95
PscI ACATGT 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 274
PspCI CACGTG 1 cut(s) 95
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 274
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 4 cut(s) 239, 270, 360, 380
SatI GCNGC 1 cut(s) 713
Sau3AI GATC 1 cut(s) 682
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 276
SetI ASST 7 cut(s) 87, 97, 248, 418, 573, 690, 779
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 1 cut(s) 192
Sse9I AATT 8 cut(s) 39, 133, 161, 236, 327, 444, 496, 622
SsiI CCGC 2 cut(s) 599, 641
SspMI CTAG 3 cut(s) 302, 437, 566
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 2 cut(s) 436, 507
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 2 cut(s) 97, 573
TaqI TCGA 1 cut(s) 297
TasI AATT 8 cut(s) 39, 133, 161, 236, 327, 444, 496, 622
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 3 cut(s) 202, 211, 630
Tru1I TTAA 4 cut(s) 239, 270, 360, 380
Tru9I TTAA 4 cut(s) 239, 270, 360, 380
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 1 cut(s) 712
Tsp45I GTSAC 1 cut(s) 659
TspRI CASTG 1 cut(s) 583
XapI RAATTY 3 cut(s) 161, 444, 622
XceI RCATGY 2 cut(s) 120, 378
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XmaJI CCTAGG 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 3 cut(s) 302, 437, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.