RchiOBHm_Chr5g0044911

zinc-binding in reverse transcriptase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
40407887 .. 40409080
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32305

Sequence Viewer

Length: 333 bp
ATGCTCCCTCAAATCCCTTTCAATGAATGGATGTTGAACCAAGCTATACACCTCAAAACGGAGGTCTTTGAGAAGTTACTAATGATCATATGGGGTCTGTGGACAAATCGAAACACCAACTTATGGGAGGACCCAGCTCGTACTACGTCTGATATCTTCTTCAACTCTATGACTTGGTTGGAAGAGTTTCAGAAGTCGAACACCATTAATGCAGCATGGAAGCAAAGAATCACACATATATGGCAACCTACATTCGGGAACGAGTTCAAGCTCAACATGGATGGACCATTTATACCACAGCTAACAAGAGGTGGGATTGGAGGTGTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.95

Weight (kDa)

6.06

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 123
AfaI GTAC 2 cut(s) 142, 327
AfiI CCNNNNNNNGG 3 cut(s) 58, 123, 254
AgsI TTSAA 4 cut(s) 22, 37, 163, 268
AluBI AGCT 4 cut(s) 44, 137, 271, 301
AluI AGCT 4 cut(s) 44, 137, 271, 301
ApeKI GCWGC 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AseI ATTAAT 1 cut(s) 207
Asp700I GAANNNNTTC 2 cut(s) 186, 263
AspS9I GGNCC 2 cut(s) 130, 284
AvaII GGWCC 2 cut(s) 130, 284
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 275
BclI TGATCA 1 cut(s) 84
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 2 cut(s) 130, 284
BmgT120I GGNCC 2 cut(s) 130, 284
BmiI GGNNCC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 123, 254
BseGI GGATG 2 cut(s) 36, 286
BseLI CCNNNNNNNGG 3 cut(s) 58, 123, 254
BseXI GCAGC 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 133
BslI CCNNNNNNNGG 3 cut(s) 58, 123, 254
Bsp143I GATC 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 132
BssMI GATC 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 177
BstF5I GGATG 2 cut(s) 36, 286
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 224
BtsCI GGATG 2 cut(s) 36, 286
Cfr13I GGNCC 2 cut(s) 130, 284
Csp6I GTAC 2 cut(s) 141, 326
CviAII CATG 2 cut(s) 216, 277
CviJI RGCY 4 cut(s) 44, 137, 271, 301
CviKI_1 RGCY 4 cut(s) 44, 137, 271, 301
CviQI GTAC 2 cut(s) 141, 326
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 130, 284
EcoO109I RGGNCCY 1 cut(s) 130
EcoRV GATATC 1 cut(s) 154
FaeI CATG 2 cut(s) 219, 280
FatI CATG 2 cut(s) 215, 276
FauNDI CATATG 1 cut(s) 89
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 2 cut(s) 43, 293
Fsp4HI GCNGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 219, 280
HinfI GANTC 1 cut(s) 228
Hpy166II GTNNAC 2 cut(s) 102, 326
Hpy188I TCNGA 2 cut(s) 151, 192
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 2 cut(s) 102, 326
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 2 cut(s) 219, 280
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 1 cut(s) 147
Lsp1109I GCAGC 1 cut(s) 224
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 75
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 3 cut(s) 148, 151, 194
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 6 cut(s) 18, 55, 62, 121, 302, 314
MroXI GAANNNNTTC 2 cut(s) 186, 263
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 238
NdeI CATATG 1 cut(s) 89
NdeII GATC 1 cut(s) 84
NlaIII CATG 2 cut(s) 219, 280
NlaIV GGNNCC 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 186, 263
PfeI GAWTC 1 cut(s) 228
PflMI CCANNNNNTGG 1 cut(s) 123
PkrI GCNGC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 130
PshBI ATTAAT 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 2 cut(s) 130, 284
PspPPI RGGWCCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 142, 327
RsaNI GTAC 2 cut(s) 141, 326
RseI CAYNNNNRTG 1 cut(s) 238
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 130, 284
SinI GGWCC 2 cut(s) 130, 284
SmiMI CAYNNNNRTG 1 cut(s) 238
TaiI ACGT 1 cut(s) 149
TaqI TCGA 2 cut(s) 109, 197
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 74
Van91I CCANNNNNTGG 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 130, 284
VspI ATTAAT 1 cut(s) 207
XmnI GAANNNNTTC 2 cut(s) 186, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.