Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007409.1

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Reverse (-)

10780 .. 11319

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007409.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgttttcggtcaaatcagcctattggattgctcaatcaaaggttcttgagaatgctttagcctcctcttcatggggcaacccatacacagtcttgtggcagtgcctatggcaagctaaagtgccgggcaaagtgcagatctgtatgtggcgtgcatgccaagatttgctccccacaagggctaggctacaaactaaaggctatgatggtgatctacggtgccttctctgtaaccaccaatgtgaagatatttcacatgtgctatgcaaatgtccgctggctactacggtcctatcatcgcctcctttcaaccttggtaatagtctactgccacatctcaatttcagagaatggatgcttgaaagagctttgtcattgaacaagggaacctttgagcagttgatgatggttctatgggcaatgtggatgaatagaaacagttgtctgtggcaaaacaagggacaaaatgcagatagcataatttgcagctctcttgcttggcttgaggagtttcataaagctagaaatgtggatcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

179

Amino Acids

20.61

Weight (kDa)

8.72

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	325
AciI	CCGC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	72, 178
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	3 cut(s)	310, 362, 379
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	4 cut(s)	116, 368, 489, 521
AluI	AGCT	4 cut(s)	116, 368, 489, 521
ApeKI	GCWGC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	2 cut(s)	200, 400
BcnI	CCSGG	1 cut(s)	126
BfaI	CTAG	2 cut(s)	183, 522
BglII	AGATCT	1 cut(s)	138
BisI	GCNGC	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	488
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	221, 388
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	345
BpuEI	CTTGAG	2 cut(s)	68, 524
BpuMI	CCSGG	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 178
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	360, 432
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	72, 178
BseMI	GCAATG	1 cut(s)	426
BseRI	GAGGAG	2 cut(s)	55, 521
BseXI	GCAGC	1 cut(s)	498
BsgI	GTGCAG	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	72, 178
BsmFI	GGGAC	1 cut(s)	474
BsmI	GAATGC	1 cut(s)	58
Bsp143I	GATC	3 cut(s)	138, 211, 532
BspACI	CCGC	1 cut(s)	275
BspLI	GGNNCC	2 cut(s)	221, 388
BspT107I	GGYRCC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	3 cut(s)	138, 211, 532
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	4 cut(s)	91, 219, 289, 440
Bst6I	CTCTTC	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	483
BstC8I	GCNNGC	4 cut(s)	114, 153, 157, 279
BstF5I	GGATG	2 cut(s)	360, 432
BstKTI	GATC	3 cut(s)	141, 214, 535
BstMBI	GATC	3 cut(s)	138, 211, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNSI	RCATGY	2 cut(s)	159, 260
BstSCI	CCNGG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	498
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	360, 432
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	4 cut(s)	114, 153, 157, 279
Cfr13I	GGNCC	1 cut(s)	289
CviAII	CATG	3 cut(s)	72, 156, 257
DpnI	GATC	3 cut(s)	140, 213, 534
DpnII	GATC	3 cut(s)	138, 211, 532
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	3 cut(s)	75, 159, 260
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	3 cut(s)	71, 155, 256
FblI	GTMKAC	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	487
FokI	GGATG	2 cut(s)	367, 439
Fsp4HI	GCNGC	1 cut(s)	487
FspBI	CTAG	2 cut(s)	183, 522
GluI	GCNGC	1 cut(s)	487
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	3 cut(s)	75, 159, 260
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	1 cut(s)	347
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	4 cut(s)	91, 219, 289, 440
HpyCH4V	TGCA	5 cut(s)	136, 155, 267, 470, 486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	75, 159, 260
Kzo9I	GATC	3 cut(s)	138, 211, 532
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	2 cut(s)	138, 263
Lsp1109I	GCAGC	1 cut(s)	498
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	2 cut(s)	183, 522
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	3 cut(s)	140, 213, 534
MboI	GATC	3 cut(s)	138, 211, 532
MboII	GAAGA	2 cut(s)	60, 257
MflI	RGATCY	1 cut(s)	138
MluCI	AATT	2 cut(s)	340, 480
MnlI	CCTC	4 cut(s)	73, 76, 312, 499
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	483
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	3 cut(s)	138, 211, 532
NlaIII	CATG	3 cut(s)	75, 159, 260
NlaIV	GGNNCC	2 cut(s)	221, 388
NspI	RCATGY	2 cut(s)	159, 260
OliI	CACNNNNGTG	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	159
PciI	ACATGT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	488
PscI	ACATGT	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	221, 388
PspPI	GGNCC	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	240
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	3 cut(s)	138, 211, 532
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	7 cut(s)	45, 118, 315, 370, 392, 491, 523
SfaNI	GCATC	1 cut(s)	345
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	47, 503
SmoI	CTYRAG	2 cut(s)	47, 503
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	2 cut(s)	340, 480
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	2 cut(s)	183, 522
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	4 cut(s)	91, 219, 289, 440
TasI	AATT	2 cut(s)	340, 480
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	1 cut(s)	486
TspDTI	ATGAA	3 cut(s)	60, 443, 503
TspRI	CASTG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	289
XceI	RCATGY	2 cut(s)	159, 260
XmiI	GTMKAC	1 cut(s)	325
XspI	CTAG	2 cut(s)	183, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.