Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001911.1

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Forward (+)

23619 .. 24035

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001911.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggaggtaatgcaacatgttctagtgtctacttcatctggggacctttacaaggaactttggaaaagtatctggaaggccaaagtgcccggcaaggtcagcatatgtgtgtggagagcatgcaataatttgcttgctacaagagacaggttattgctcaagggatacactggggagttacactgtcttctttgtcagcataatattgaagacgcatctcacttattatgtaaatgccccatcgcctcaactattctctctgagcctccttttaacctacaatcggaactatctttggttgcaagtttcaaagattggatgctggatagagccctttttacactcagtggggaggtatttgctaaacttatgatgatcttgtgggccatttggaaggacaggaacaactttctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

138

Amino Acids

15.8

Weight (kDa)

8.23

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	52, 283
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	209, 310
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	2 cut(s)	78, 384
AspS9I	GGNCC	2 cut(s)	43, 384
AsuC2I	CCSGG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	179, 216
BccI	CCATC	1 cut(s)	248
BciVI	GTATCC	1 cut(s)	158
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	413
BfuI	GTATCC	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	43, 384
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	224, 309
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	2 cut(s)	179, 216
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 283
Bse1I	ACTGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	52, 283
BseMII	CTCAG	2 cut(s)	252, 358
BseNI	ACTGG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	90
BshFI	GGCC	2 cut(s)	80, 386
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	52, 283
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	80, 386
Bsp1286I	GDGCHC	2 cut(s)	90, 334
Bsp143I	GATC	1 cut(s)	375
BspANI	GGCC	2 cut(s)	80, 386
BspCNI	CTCAG	2 cut(s)	253, 357
BspLI	GGNNCC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	121, 135
BstDEI	CTNAG	2 cut(s)	261, 344
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	1 cut(s)	378
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNSI	RCATGY	2 cut(s)	20, 123
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	179, 216
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	80, 386
BtgZI	GCGATG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	3 cut(s)	168, 181, 352
Cac8I	GCNNGC	2 cut(s)	121, 135
Cfr13I	GGNCC	2 cut(s)	43, 384
CseI	GACGC	1 cut(s)	221
CviAII	CATG	2 cut(s)	17, 120
CviJI	RGCY	4 cut(s)	80, 265, 332, 386
CviKI_1	RGCY	4 cut(s)	80, 265, 332, 386
DdeI	CTNAG	2 cut(s)	261, 344
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
DraIII	CACNNNGTG	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	2 cut(s)	20, 123
FaiI	YATR	8 cut(s)	18, 104, 106, 121, 201, 229, 371, 415
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	2 cut(s)	16, 119
FauNDI	CATATG	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	29
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	80, 386
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	20, 123
HpaII	CCGG	1 cut(s)	90
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	2 cut(s)	262, 286
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	70, 388
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	13, 123, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	2 cut(s)	261, 344
Hsp92II	CATG	2 cut(s)	20, 123
Kzo9I	GATC	1 cut(s)	375
LpnPI	CCDG	7 cut(s)	24, 58, 103, 133, 156, 308, 385
LweI	GCATC	2 cut(s)	224, 309
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MboII	GAAGA	2 cut(s)	179, 221
MhlI	GDGCHC	2 cut(s)	90, 334
MluCI	AATT	1 cut(s)	127
MnlI	CCTC	3 cut(s)	256, 276, 346
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	90
NdeI	CATATG	1 cut(s)	104
NdeII	GATC	1 cut(s)	375
NlaIII	CATG	2 cut(s)	20, 123
NlaIV	GGNNCC	1 cut(s)	44
NspI	RCATGY	2 cut(s)	20, 123
PaeI	GCATGC	1 cut(s)	123
PciI	ACATGT	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	43
PscI	ACATGT	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	43, 384
PspPPI	RGGWCCY	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	375
Sau96I	GGNCC	2 cut(s)	43, 384
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	90, 334
SetI	ASST	6 cut(s)	9, 48, 99, 152, 279, 357
SfaNI	GCATC	2 cut(s)	224, 309
SfcI	CTRYAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	1 cut(s)	127
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	185
TasI	AATT	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	3 cut(s)	175, 188, 352
TspDTI	ATGAA	1 cut(s)	24
TspRI	CASTG	3 cut(s)	175, 188, 352
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	50
XceI	RCATGY	2 cut(s)	20, 123
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.