Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Forward (+)

22557316 .. 22559878

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0219200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGAGATGCCTAGCCACGGATCCGCTTCTCTTCCAAATAATTTCATCAGGAGAGAAAGATCATTCCTTCAGTCTCCCACTTATGGAAACCTCGTCACTGTTCTTAGCATTGATGGAGGTGGAATCAGAGGAATTATCCCCGGTACTCTTCTCAGTTTCCTTGAGTCTGAGCTTCAGAAGCTGGATGGTGAGGATGTAAGACTGGCAGATTATTTTGATGTCATTGCAGGAACTAGTACTGGTGGCCTTGTGACTGCCATGCTTACCGCCCCGGATGAAAACGGCCGTCCATTATTTGCTGCTAAAGATATCAACAAATTTTACCTTGAACACTGCCCTAAGATATTTCCCCAAGATAGTGGCAAAATTGATCGTCTTATTCCATTAACTCCAATAACTGATGCGGTGGCGGCGGTAAAAGCTATCAGAGGGCCAAAGTATGATGGGGAGTATTTACATAATATAGTGAAGGAAAAGTTAGGAGACATAAGATTGCATCAGACATTGACCAACGTCATAATTCCCACGTTTGATATAAAGAGGCTCCAACCAACCGTCTTCTCCAGCTATGAGGTGAGAAAGAACAGTAACCTAGATGCTTTACTCTCGGATATATGCATTGCAACTTCAGCAGCCCCAACCTTTTTTCCAGCCCATCATTTTGAAACCGAAAATTCCACGACTGGTCAAATAAGAGAATTTGATCTCATTGATGGTGGTGTTGCTGCTAATAACCCAGCTTTGGTGGCTATAAGTGAAGTGTCAAAAGAAATTTACAAGGGAAATCCCGACTTTTTTACAGTGAAGGCAACTGAATACTCCCGGTTTCTAGTTGTATCATTGGGTACTGGTTCAGCAAAATGTGATGAGAAGTACGATGCCCAAAATGCAGCTAAGTGGGGTATTTTGGGATGGTTGATCGGAGGCGATTCCTGTCCGTTGGTTGATATATTTACTCAAGCAAGTAGTGATATGGTTGACTTCCACCTTTCTACAGTGTTCCAAGCCCTTTACTCTGAAAAAAATTACCTAAGAATCCAGGATGATGATTTGGGTAAGACATTGTGTTCTGTGGATATTGCTACAGAAGAAAACTTGCAAAATCTTGTAAAAGTTGGAGAAAATTTGTTAAAGAAACCAGTTTCCCGAGTAAACTTGGAAACCGGTATCCATGAGCCTGCCCATCATTCTACCAACGAAGAGGCTCTAGTAAGGGTAGCTGGAATTTTGTCCAAGGAAAGGAGAGTCCGTGAAATGAGATCGCCACAGGGAAAGAAGGCCACAACAACAACCAGATCCAACTTGTCATTCTCCTTCATCAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28 RVT_3

Protein Analysis

442

Amino Acids

48.6

Weight (kDa)

5.66

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	35 - 251	2e-25	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	24, 267, 404, 410, 413
AclWI	GGATC	3 cut(s)	15, 28, 1290
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	6 cut(s)	317, 673, 698, 771, 1123, 1224
AcuI	CTGAAG	3 cut(s)	53, 158, 612
AfaI	GTAC	4 cut(s)	145, 238, 847, 875
AfiI	CCNNNNNNNGG	4 cut(s)	17, 83, 742, 1239
AgeI	ACCGGT	1 cut(s)	1163
AgsI	TTSAA	2 cut(s)	329, 665
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	1038
AjuI	GAANNNNNNNTTGG	2 cut(s)	1292, 1324
AluBI	AGCT	7 cut(s)	172, 181, 422, 567, 740, 893, 1220
AluI	AGCT	7 cut(s)	172, 181, 422, 567, 740, 893, 1220
Alw26I	GTCTC	2 cut(s)	78, 477
AlwI	GGATC	3 cut(s)	15, 28, 1290
AlwNI	CAGNNNCTG	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	1146
AoxI	GGCC	4 cut(s)	244, 283, 431, 1278
ApeKI	GCWGC	4 cut(s)	299, 632, 725, 890
ApoI	RAATTY	6 cut(s)	317, 673, 698, 771, 1123, 1224
AsiGI	ACCGGT	1 cut(s)	1163
AspS9I	GGNCC	1 cut(s)	431
AsuC2I	CCSGG	3 cut(s)	141, 272, 823
AsuHPI	GGTGA	2 cut(s)	200, 586
AvaI	CYCGRG	1 cut(s)	1146
BamHI	GGATCC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	550
BbvI	GCAGC	4 cut(s)	286, 644, 712, 902
BccI	CCATC	7 cut(s)	107, 179, 437, 663, 707, 906, 1191
BceAI	ACGGC	2 cut(s)	270, 298
BciT130I	CCWGG	1 cut(s)	1040
BciVI	GTATCC	1 cut(s)	1178
BcnI	CCSGG	3 cut(s)	141, 272, 823
BcoDI	GTCTC	2 cut(s)	78, 477
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	5 cut(s)	12, 234, 593, 830, 1208
BfmI	CTRYAG	2 cut(s)	993, 1083
BfuI	GTATCC	1 cut(s)	1178
BisI	GCNGC	5 cut(s)	300, 411, 633, 726, 891
BlsI	GCNGC	5 cut(s)	301, 412, 634, 727, 892
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	4 cut(s)	141, 272, 823, 1040
BmeT110I	CYCGRG	1 cut(s)	1146
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	2 cut(s)	22, 545
BmrFI	CCNGG	4 cut(s)	141, 272, 823, 1040
BmsI	GCATC	4 cut(s)	391, 505, 586, 868
BoxI	GACNNNNGTC	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	550
BpmI	CTGGAG	1 cut(s)	547
BpuEI	CTTGAG	2 cut(s)	182, 942
BpuMI	CCSGG	3 cut(s)	141, 272, 823
BsaJI	CCNNGG	4 cut(s)	16, 139, 270, 1233
BsaWI	WCCGGW	1 cut(s)	1163
BsaXI	ACNNNNNCTCC	2 cut(s)	1234, 1264
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 83, 742, 1239
Bse118I	RCCGGY	1 cut(s)	1163
Bse1I	ACTGG	5 cut(s)	207, 244, 688, 853, 1139
Bse3DI	GCAATG	2 cut(s)	222, 618
BseBI	CCWGG	1 cut(s)	1040
BseDI	CCNNGG	4 cut(s)	16, 139, 270, 1233
BseGI	GGATG	5 cut(s)	190, 199, 280, 917, 1048
BseLI	CCNNNNNNNGG	4 cut(s)	17, 83, 742, 1239
BseMI	GCAATG	2 cut(s)	222, 618
BseMII	CTCAG	2 cut(s)	159, 166
BseNI	ACTGG	5 cut(s)	207, 244, 688, 853, 1139
BseX3I	CGGCCG	1 cut(s)	283
BseXI	GCAGC	4 cut(s)	286, 644, 712, 902
BseYI	CCCAGC	1 cut(s)	736
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	4 cut(s)	246, 285, 433, 1280
BshTI	ACCGGT	1 cut(s)	1163
BsiEI	CGRYCG	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	1146
BsiSI	CCGG	4 cut(s)	141, 272, 823, 1164
BslI	CCNNNNNNNGG	4 cut(s)	17, 83, 742, 1239
BsmAI	GTCTC	2 cut(s)	78, 477
BsnI	GGCC	4 cut(s)	246, 285, 433, 1280
BsoBI	CYCGRG	1 cut(s)	1146
Bsp143I	GATC	7 cut(s)	20, 59, 370, 703, 918, 1259, 1295
BspACI	CCGC	5 cut(s)	24, 267, 404, 410, 413
BspANI	GGCC	4 cut(s)	246, 285, 433, 1280
BspCNI	CTCAG	2 cut(s)	160, 165
BspLI	GGNNCC	2 cut(s)	22, 545
BspPI	GGATC	3 cut(s)	15, 28, 1290
BsrDI	GCAATG	2 cut(s)	222, 618
BsrFI	RCCGGY	1 cut(s)	1163
BsrI	ACTGG	5 cut(s)	207, 244, 688, 853, 1139
BssAI	RCCGGY	1 cut(s)	1163
BssECI	CCNNGG	4 cut(s)	16, 139, 270, 1233
BssMI	GATC	7 cut(s)	20, 59, 370, 703, 918, 1259, 1295
BssT1I	CCWWGG	1 cut(s)	1233
Bst2UI	CCWGG	1 cut(s)	1040
Bst4CI	ACNGT	5 cut(s)	100, 556, 587, 802, 997
Bst6I	CTCTTC	3 cut(s)	36, 153, 1194
BstC8I	GCNNGC	1 cut(s)	1179
BstDEI	CTNAG	6 cut(s)	104, 152, 168, 339, 894, 1031
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	5 cut(s)	190, 199, 280, 917, 1048
BstKTI	GATC	7 cut(s)	23, 62, 373, 706, 921, 1262, 1298
BstMAI	GTCTC	2 cut(s)	78, 477
BstMBI	GATC	7 cut(s)	20, 59, 370, 703, 918, 1259, 1295
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 410, 419, 629, 746, 887
BstNI	CCWGG	1 cut(s)	1040
BstPAI	GACNNNNGTC	1 cut(s)	512
BstSCI	CCNGG	4 cut(s)	139, 270, 821, 1038
BstSFI	CTRYAG	2 cut(s)	993, 1083
BstV1I	GCAGC	4 cut(s)	286, 644, 712, 902
BstV2I	GAAGAC	1 cut(s)	550
BstX2I	RGATCY	2 cut(s)	20, 1295
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	2 cut(s)	20, 1295
BstZI	CGGCCG	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	1178
BsuRI	GGCC	4 cut(s)	246, 285, 433, 1280
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	5 cut(s)	190, 199, 280, 917, 1048
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	4 cut(s)	96, 331, 807, 1002
Cac8I	GCNNGC	1 cut(s)	1179
CaiI	CAGNNNCTG	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	1163
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	4 cut(s)	144, 237, 846, 874
CspAI	ACCGGT	1 cut(s)	1163
CviAII	CATG	2 cut(s)	259, 1172
CviQI	GTAC	4 cut(s)	144, 237, 846, 874
DdeI	CTNAG	6 cut(s)	104, 152, 168, 339, 894, 1031
DpnI	GATC	7 cut(s)	22, 61, 372, 705, 920, 1261, 1297
DpnII	GATC	7 cut(s)	20, 59, 370, 703, 918, 1259, 1295
EaeI	YGGCCR	1 cut(s)	283
EagI	CGGCCG	1 cut(s)	283
Eam1104I	CTCTTC	3 cut(s)	36, 153, 1194
EarI	CTCTTC	3 cut(s)	36, 153, 1194
EclXI	CGGCCG	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	1233
Eco32I	GATATC	1 cut(s)	310
Eco52I	CGGCCG	1 cut(s)	283
Eco57I	CTGAAG	3 cut(s)	53, 158, 612
Eco88I	CYCGRG	1 cut(s)	1146
EcoRII	CCWGG	1 cut(s)	1038
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	1233
EcoT22I	ATGCAT	1 cut(s)	620
ErhI	CCWWGG	1 cut(s)	1233
FaeI	CATG	2 cut(s)	262, 1175
FatI	CATG	2 cut(s)	258, 1171
Fnu4HI	GCNGC	5 cut(s)	300, 411, 633, 726, 891
FokI	GGATG	5 cut(s)	197, 206, 287, 924, 1055
Fsp4HI	GCNGC	5 cut(s)	300, 411, 633, 726, 891
FspBI	CTAG	5 cut(s)	12, 234, 593, 830, 1208
GluI	GCNGC	5 cut(s)	300, 411, 633, 726, 891
GsaI	CCCAGC	1 cut(s)	740
GsuI	CTGGAG	1 cut(s)	547
HaeIII	GGCC	4 cut(s)	246, 285, 433, 1280
HapII	CCGG	4 cut(s)	141, 272, 823, 1164
Hin1II	CATG	2 cut(s)	262, 1175
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HinfI	GANTC	5 cut(s)	123, 164, 929, 1035, 1245
HpaII	CCGG	4 cut(s)	141, 272, 823, 1164
HphI	GGTGA	2 cut(s)	200, 586
Hpy166II	GTNNAC	2 cut(s)	979, 1153
Hpy188I	TCNGA	8 cut(s)	128, 169, 177, 428, 501, 610, 923, 1018
Hpy188III	TCNNGA	3 cut(s)	49, 788, 1146
Hpy8I	GTNNAC	2 cut(s)	979, 1153
HpyAV	CCTTC	5 cut(s)	77, 463, 799, 1270, 1324
HpyCH4III	ACNGT	5 cut(s)	100, 556, 587, 802, 997
HpyCH4IV	ACGT	2 cut(s)	513, 527
HpyCH4V	TGCA	6 cut(s)	227, 496, 618, 623, 890, 1099
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 410, 419, 629, 746, 887
HpyF3I	CTNAG	6 cut(s)	104, 152, 168, 339, 894, 1031
HpySE526I	ACGT	2 cut(s)	513, 527
Hsp92II	CATG	2 cut(s)	262, 1175
Kzo9I	GATC	7 cut(s)	20, 59, 370, 703, 918, 1259, 1295
LmnI	GCTCC	1 cut(s)	549
Lsp1109I	GCAGC	4 cut(s)	286, 644, 712, 902
LweI	GCATC	4 cut(s)	391, 505, 586, 868
MaeI	CTAG	5 cut(s)	12, 234, 593, 830, 1208
MaeII	ACGT	2 cut(s)	513, 527
MaeIII	GTNAC	3 cut(s)	94, 250, 587
MalI	GATC	7 cut(s)	22, 61, 372, 705, 920, 1261, 1297
MboI	GATC	7 cut(s)	20, 59, 370, 703, 918, 1259, 1295
MboII	GAAGA	5 cut(s)	23, 140, 550, 1100, 1211
MflI	RGATCY	2 cut(s)	20, 1295
MlyI	GAGTC	2 cut(s)	173, 1254
MmeI	TCCRAC	3 cut(s)	571, 1096, 1323
MnlI	CCTC	9 cut(s)	101, 110, 122, 184, 422, 534, 565, 917, 1195
Mph1103I	ATGCAT	1 cut(s)	620
MseI	TTAA	3 cut(s)	386, 1130, 1327
MspI	CCGG	4 cut(s)	141, 272, 823, 1164
MspR9I	CCNGG	4 cut(s)	141, 272, 823, 1040
MvaI	CCWGG	1 cut(s)	1040
MwoI	GCNNNNNNNGC	6 cut(s)	178, 410, 419, 629, 746, 887
NciI	CCSGG	3 cut(s)	141, 272, 823
NdeII	GATC	7 cut(s)	20, 59, 370, 703, 918, 1259, 1295
NlaIII	CATG	2 cut(s)	262, 1175
NlaIV	GGNNCC	2 cut(s)	22, 545
NmuCI	GTSAC	2 cut(s)	94, 250
NsiI	ATGCAT	1 cut(s)	620
PfeI	GAWTC	3 cut(s)	123, 929, 1035
PfoI	TCCNGGA	1 cut(s)	1038
PinAI	ACCGGT	1 cut(s)	1163
PkrI	GCNGC	5 cut(s)	301, 412, 634, 727, 892
PleI	GAGTC	2 cut(s)	172, 1253
PpsI	GAGTC	2 cut(s)	172, 1253
PshAI	GACNNNNGTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	1038
PspFI	CCCAGC	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	1038
PspN4I	GGNNCC	2 cut(s)	22, 545
PspPI	GGNCC	1 cut(s)	431
PstNI	CAGNNNCTG	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	20, 1295
RsaI	GTAC	4 cut(s)	145, 238, 847, 875
RsaNI	GTAC	4 cut(s)	144, 237, 846, 874
SaqAI	TTAA	3 cut(s)	386, 1130, 1327
SatI	GCNGC	5 cut(s)	300, 411, 633, 726, 891
Sau3AI	GATC	7 cut(s)	20, 59, 370, 703, 918, 1259, 1295
Sau96I	GGNCC	1 cut(s)	431
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	2 cut(s)	173, 1254
ScrFI	CCNGG	4 cut(s)	141, 272, 823, 1040
SfaNI	GCATC	4 cut(s)	391, 505, 586, 868
SfcI	CTRYAG	2 cut(s)	993, 1083
SmlI	CTYRAG	2 cut(s)	161, 957
SmoI	CTYRAG	2 cut(s)	161, 957
SpeI	ACTAGT	1 cut(s)	233
SsiI	CCGC	5 cut(s)	24, 267, 404, 410, 413
SspMI	CTAG	5 cut(s)	12, 234, 593, 830, 1208
StyD4I	CCNGG	4 cut(s)	139, 270, 821, 1038
StyI	CCWWGG	1 cut(s)	1233
TaaI	ACNGT	5 cut(s)	100, 556, 587, 802, 997
TaiI	ACGT	2 cut(s)	516, 530
TatI	WGTACW	1 cut(s)	236
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	3 cut(s)	123, 929, 1035
Tru1I	TTAA	3 cut(s)	386, 1130, 1327
Tru9I	TTAA	3 cut(s)	386, 1130, 1327
TscAI	CASTG	4 cut(s)	103, 338, 807, 1002
TseFI	GTSAC	2 cut(s)	94, 250
TseI	GCWGC	4 cut(s)	299, 632, 725, 890
Tsp45I	GTSAC	2 cut(s)	94, 250
TspDTI	ATGAA	3 cut(s)	34, 291, 1306
TspGWI	ACGGA	3 cut(s)	33, 927, 1238
TspRI	CASTG	4 cut(s)	103, 338, 807, 1002
XapI	RAATTY	6 cut(s)	317, 673, 698, 771, 1123, 1224
XspI	CTAG	5 cut(s)	12, 234, 593, 830, 1208
ZrmI	AGTACT	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.