Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007793.1

Orthogroup ID

OG0002539

Physical Location & Seq

Genomic Coordinates Reverse (-)

25690 .. 26373

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007793.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgttctggtctccaccatcatctggtgatccctacaaagaattatggcgacgtatctggaaggtcaaggttccgggtaaggttggcatatgtgcatggaaagcttgtaacaatctcctccctacaagagagcgtcttctcactaaaggatacactagtgacctccattatgtactctgtccacatggtatcgaagaggtatcacccatagcggcggagattctctctgccccacctttcaatctgcagaacgacctttgccagacttcaaccttcaaggattggatgttggagagagctctgacactaagtagtgagctgtttgctaaactcttaatggtggtttgggcagtttggaaaaacagaaacagttttctttggaatggtaccaagcaaactgctcaggatgttctcttaagtagctttgcatggcttgaggagttccaaagagctaggaataccgtggtgcatgctgtgaagcaaaatcaactccactggacactaactgctacgggaatcttaaaaatgaatgtggatgccgcttacttacccaaccaaactcgagggagtgtgggaggagtgttaagaactgatgcaggacgttttgtggttaccttcgctggacctatcccacatactgcctctcctaaacagtgtgttatatgcaattcgatcgggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

227

Amino Acids

25.5

Weight (kDa)

9.32

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19763
pyrus_communis	pycom11g21530
rosa_chinensis	RchiOBHm_Chr3g0477221 RchiOBHm_Chr5g0044911
rosa_laevigata	RLG00000002565
rosa_multiflora	Rmu_co8232993.1_g000001 Rmu_sc0000841.1_g000006 Rmu_sc0000957.1_g000002 Rmu_sc0001035.1_g000054 Rmu_sc0001616.1_g000042 Rmu_sc0001616.1_g000043 Rmu_sc0001911.1_g000006 Rmu_sc0002195.1_g000001 Rmu_sc0002407.1_g000016 Rmu_sc0002854.1_g000009 Rmu_sc0003722.1_g000038 Rmu_sc0004084.1_g000060 Rmu_sc0005693.1_g000013 Rmu_sc0006255.1_g000005 Rmu_sc0006591.1_g000003 Rmu_sc0007409.1_g000001 Rmu_sc0007793.1_g000004 Rmu_sc0009420.1_g000001 Rmu_sc0010368.1_g000005 Rmu_sc0010867.1_g000001 Rmu_ssc0000432.1_g000012
rosa_roxburghii	Rroxscaffold_3G00243150
rosa_rugosa	Rorug01G0183800 Rorug03G0046000 Rorug03G0189600 Rorug03G0283000 Rorug03G0330400 Rorug04G0001200 Rorug04G0105000 Rorug04G0142500 Rorug05G0219200 Rorug05G0240300 Rorug05G0266300 Rorug05G0507900 Rorug07G0104400 Rorug07G0113800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	23
AciI	CCGC	3 cut(s)	212, 215, 540
AclWI	GGATC	1 cut(s)	23
AfaI	GTAC	2 cut(s)	174, 388
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflII	CTTAAG	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	241, 270, 277
AhlI	ACTAGT	1 cut(s)	155
AluBI	AGCT	5 cut(s)	104, 299, 319, 423, 452
AluI	AGCT	5 cut(s)	104, 299, 319, 423, 452
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	561
Asp718I	GGTACC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	623
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	38, 195
AvaI	CYCGRG	1 cut(s)	561
AvaII	GGWCC	1 cut(s)	623
BaeI	ACNNNNGTAYC	2 cut(s)	142, 175
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	301
BccI	CCATC	1 cut(s)	25
BcgI	CGANNNNNNTGC	1 cut(s)	655
BciVI	GTATCC	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	15
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	2 cut(s)	156, 453
BfmI	CTRYAG	1 cut(s)	245
BfrI	CTTAAG	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	213, 540
BlsI	GCNGC	2 cut(s)	214, 541
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	623
BmeT110I	CYCGRG	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	2 cut(s)	72, 388
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	526, 583
BpiI	GAAGAC	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	3 cut(s)	291, 412, 541
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	1 cut(s)	500
BseRI	GAGGAG	3 cut(s)	107, 452, 591
Bsh1285I	CGRYCG	1 cut(s)	675
BshNI	GGYRCC	1 cut(s)	386
BsiEI	CGRYCG	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	28, 672
BspACI	CCGC	3 cut(s)	212, 215, 540
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	72, 388
BspMAI	CTGCAG	1 cut(s)	249
BspPI	GGATC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	386
BspTI	CTTAAG	1 cut(s)	415
BspTNI	GGTCTC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	2 cut(s)	28, 672
Bst4CI	ACNGT	3 cut(s)	371, 463, 654
Bst6I	CTCTTC	1 cut(s)	189
BstAFI	CTTAAG	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	2 cut(s)	308, 402
BstDSI	CCRYGG	1 cut(s)	462
BstEII	GGTNACC	1 cut(s)	610
BstF5I	GGATG	3 cut(s)	291, 412, 541
BstKTI	GATC	2 cut(s)	31, 675
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	2 cut(s)	28, 672
BstMCI	CGRYCG	1 cut(s)	675
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	473
BstPI	GGTNACC	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	3 cut(s)	291, 412, 541
BtsIMutI	CAGTG	2 cut(s)	493, 659
Cac8I	GCNNGC	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	623
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	173, 387
CviAII	CATG	4 cut(s)	96, 185, 429, 470
CviJI	RGCY	6 cut(s)	104, 299, 319, 423, 433, 452
CviKI_1	RGCY	6 cut(s)	104, 299, 319, 423, 433, 452
CviQI	GTAC	2 cut(s)	173, 387
DdeI	CTNAG	2 cut(s)	308, 402
DpnI	GATC	2 cut(s)	30, 674
DpnII	GATC	2 cut(s)	28, 672
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	561
Eco91I	GGTNACC	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	301
FaeI	CATG	4 cut(s)	99, 188, 432, 473
FatI	CATG	4 cut(s)	95, 184, 428, 469
FauNDI	CATATG	1 cut(s)	89
Fnu4HI	GCNGC	2 cut(s)	213, 540
FokI	GGATG	3 cut(s)	298, 419, 548
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	213, 540
FspBI	CTAG	2 cut(s)	156, 453
GluI	GCNGC	2 cut(s)	213, 540
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	99, 188, 432, 473
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	2 cut(s)	220, 516
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	38, 195
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	3 cut(s)	58, 404, 676
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	3 cut(s)	55, 283, 625
HpyCH4III	ACNGT	3 cut(s)	371, 463, 654
HpyCH4IV	ACGT	2 cut(s)	52, 601
HpyCH4V	TGCA	6 cut(s)	95, 247, 428, 469, 596, 666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	2 cut(s)	308, 402
HpySE526I	ACGT	2 cut(s)	52, 601
Hsp92II	CATG	4 cut(s)	99, 188, 432, 473
KpnI	GGTACC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	28, 672
LpnPI	CCDG	8 cut(s)	9, 43, 87, 275, 389, 481, 582, 606
LweI	GCATC	2 cut(s)	526, 583
MaeI	CTAG	2 cut(s)	156, 453
MaeII	ACGT	2 cut(s)	52, 601
MaeIII	GTNAC	3 cut(s)	107, 158, 610
MalI	GATC	2 cut(s)	30, 674
MboI	GATC	2 cut(s)	28, 672
MboII	GAAGA	2 cut(s)	128, 206
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	2 cut(s)	41, 667
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	7 cut(s)	128, 173, 190, 430, 557, 569, 652
MseI	TTAA	4 cut(s)	335, 416, 521, 584
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	101
NciI	CCSGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	89
NdeII	GATC	2 cut(s)	28, 672
NlaIII	CATG	4 cut(s)	99, 188, 432, 473
NlaIV	GGNNCC	2 cut(s)	72, 388
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PaeR7I	CTCGAG	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	220, 516
PflMI	CCANNNNNTGG	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	214, 541
Ple19I	CGATCG	1 cut(s)	675
Psp124BI	GAGCTC	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	72, 388
PspPI	GGNCC	1 cut(s)	623
PspXI	VCTCGAGB	1 cut(s)	561
PstI	CTGCAG	1 cut(s)	249
PvuI	CGATCG	1 cut(s)	675
RsaI	GTAC	2 cut(s)	174, 388
RsaNI	GTAC	2 cut(s)	173, 387
SacI	GAGCTC	1 cut(s)	301
SaqAI	TTAA	4 cut(s)	335, 416, 521, 584
SatI	GCNGC	2 cut(s)	213, 540
Sau3AI	GATC	2 cut(s)	28, 672
Sau96I	GGNCC	1 cut(s)	623
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	2 cut(s)	526, 583
SfcI	CTRYAG	1 cut(s)	245
Sfr274I	CTCGAG	1 cut(s)	561
SinI	GGWCC	1 cut(s)	623
SlaI	CTCGAG	1 cut(s)	561
SmlI	CTYRAG	3 cut(s)	415, 434, 561
SmoI	CTYRAG	3 cut(s)	415, 434, 561
SpeI	ACTAGT	1 cut(s)	155
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	2 cut(s)	41, 667
SsiI	CCGC	3 cut(s)	212, 215, 540
SspMI	CTAG	2 cut(s)	156, 453
SstI	GAGCTC	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	3 cut(s)	371, 463, 654
TaiI	ACGT	2 cut(s)	55, 604
TaqI	TCGA	3 cut(s)	192, 562, 671
TasI	AATT	2 cut(s)	41, 667
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	2 cut(s)	215, 542
TfiI	GAWTC	2 cut(s)	220, 516
Tru1I	TTAA	4 cut(s)	335, 416, 521, 584
Tru9I	TTAA	4 cut(s)	335, 416, 521, 584
TscAI	CASTG	2 cut(s)	500, 659
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	500, 659
Van91I	CCANNNNNTGG	1 cut(s)	23
Vha464I	CTTAAG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	623
XceI	RCATGY	1 cut(s)	473
XhoI	CTCGAG	1 cut(s)	561
XspI	CTAG	2 cut(s)	156, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.